Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011617

Physical Location & Seq

Genomic Coordinates Reverse (-)

4902670 .. 4910937

Gene Structure 8268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022599

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGATTAGTTTAAGAAGCAACGAGTTTGTGGGTGAGTTGAAGAACTGTGAATTTCTGGAGAAAGTGAAATCCAGCGTGGGGTCATCCTCTCACTCGGTTCCTTCCGCACCTGCAATCAATGATGCATGTCTCTTCTCAGCTCCTCATCCAAGAGTGCTACAGGAGGTTGGTTCACTATTGGTCAAAATCCCTAGCTATTTGTTTTTCACACCCAATAAAGAGATACAAACTACCTCAGTTCTCCACTCTTGTATTCACCCTTCATTGAAGATTTCAATTCTGAATGGAATTATCATGGGAGGTGGGGTTGGTGCTTCCGTCCATGGTAGACTCCGTGTTGCAACTGAGAATTTGGTAGATCTGTTGAAACATGACAAGGTTCTGAGCAAGAAGCCCCCTGCTCCTCACCGAGTTGTGCCTGATTATCTGTTGAATGCAACAACTAAAGAAGCCAACAAGAGAGTTAAGCTTGCCAACCTTGGTCGCCGTGGATTCAAGAAAAAATTCAAGGAAGATAAGGACCCCCTTAAGTCTTTCAGTGCTCAGGCTGTTGGTGTTGGCTCTTTCTCTGGCAGTACTATTCCAAAGACCCTTGAAAATCTTGTTGCTCTTGATTACATGCTTGATCTTGCTGCGACAAATGGTGGTGGCGGTGTAGGCCTTGATCTTGCTGGGGCATGTGGTGGTGGTATAATCCTTGAGCTTGATGGGGCAGCTTTGGTTCATGGTGCCCTTGAGGCCTTGAAGGAAGCCATCTTCTTCTGCACACAAGAAAATCATTGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

263

Amino Acids

27.84

Weight (kDa)

8.97

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	79 - 118	2.6e-08	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405541
rosa_laevigata	RLG00000012603 RLG00000014250 RLG00000018184 RLG00000022599 RLG00000030134 RLG00000035091 RLG00000035371
rosa_roxburghii	Rroxscaffold_2G00103110 Rroxscaffold_3G00244540
rosa_rugosa	Rorug04G0102200 Rorug06G0229300
rosa_samantha	Rh1BG178600 Rh2BG296500 Rh2CG274200 Rh2CG294400 Rh4DG256300 Rh5BG223800 Rh5BG277400 Rh6AG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	118
Acc36I	ACCTGC	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	328
AciI	CCGC	2 cut(s)	105, 651
AcsI	RAATTY	3 cut(s)	50, 349, 503
AfaI	GTAC	1 cut(s)	577
AfiI	CCNNNNNNNGG	1 cut(s)	78
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	9 cut(s)	40, 268, 276, 367, 433, 496, 508, 596, 745
AluBI	AGCT	5 cut(s)	140, 195, 469, 703, 716
AluI	AGCT	5 cut(s)	140, 195, 469, 703, 716
Alw21I	GWGCWC	1 cut(s)	544
Alw26I	GTCTC	1 cut(s)	134
AoxI	GGCC	2 cut(s)	658, 738
ApeKI	GCWGC	2 cut(s)	632, 713
ApoI	RAATTY	3 cut(s)	50, 349, 503
Asp700I	GAANNNNTTC	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	520
AsuHPI	GGTGA	3 cut(s)	44, 248, 398
AvaII	GGWCC	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	733
BanI	GGYRCC	1 cut(s)	728
BarI	GAAGNNNNNNTAC	2 cut(s)	244, 276
Bbv12I	GWGCWC	1 cut(s)	544
BbvI	GCAGC	2 cut(s)	619, 725
BccI	CCATC	2 cut(s)	701, 761
BceAI	ACGGC	1 cut(s)	471
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	158
BfrI	CTTAAG	1 cut(s)	527
BfuAI	ACCTGC	1 cut(s)	118
BglI	GCCNNNNNGGC	1 cut(s)	737
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	2 cut(s)	633, 714
BlsI	GCNGC	2 cut(s)	634, 715
BmcAI	AGTACT	1 cut(s)	577
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	3 cut(s)	99, 522, 730
BmsI	GCATC	1 cut(s)	112
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	2 cut(s)	719, 755
BsaJI	CCNNGG	3 cut(s)	322, 478, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	778
BseDI	CCNNGG	3 cut(s)	322, 478, 487
BseGI	GGATG	2 cut(s)	83, 145
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMI	GCAATG	1 cut(s)	778
BseMII	CTCAG	5 cut(s)	150, 249, 336, 374, 557
BseRI	GAGGAG	2 cut(s)	132, 393
BseSI	GKGCMC	1 cut(s)	733
BseXI	GCAGC	2 cut(s)	619, 725
BseYI	CCCAGC	1 cut(s)	671
BsgI	GTGCAG	1 cut(s)	748
BshFI	GGCC	2 cut(s)	660, 740
BshNI	GGYRCC	1 cut(s)	728
BsiHKAI	GWGCWC	1 cut(s)	544
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	660, 740
Bsp1286I	GDGCHC	2 cut(s)	544, 733
Bsp143I	GATC	3 cut(s)	358, 625, 664
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	2 cut(s)	105, 651
BspANI	GGCC	2 cut(s)	660, 740
BspCNI	CTCAG	5 cut(s)	149, 248, 337, 375, 556
BspLI	GGNNCC	3 cut(s)	99, 522, 730
BspMI	ACCTGC	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	728
BspTI	CTTAAG	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	778
BssECI	CCNNGG	3 cut(s)	322, 478, 487
BssMI	GATC	3 cut(s)	358, 625, 664
BssT1I	CCWWGG	2 cut(s)	322, 478
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	5 cut(s)	136, 235, 345, 383, 543
BstDSI	CCRYGG	2 cut(s)	322, 487
BstF5I	GGATG	2 cut(s)	83, 145
BstKTI	GATC	3 cut(s)	361, 628, 667
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	3 cut(s)	358, 625, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	657, 737
BstNSI	RCATGY	3 cut(s)	129, 622, 681
BstSFI	CTRYAG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	733
BstV1I	GCAGC	2 cut(s)	619, 725
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	660, 740
BtgI	CCRYGG	2 cut(s)	322, 487
BtsCI	GGATG	2 cut(s)	83, 145
BtsIMutI	CAGTG	1 cut(s)	544
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	576
CviAII	CATG	7 cut(s)	126, 295, 323, 371, 619, 678, 725
CviQI	GTAC	1 cut(s)	576
DdeI	CTNAG	5 cut(s)	136, 235, 345, 383, 543
DpnI	GATC	3 cut(s)	360, 627, 666
DpnII	GATC	3 cut(s)	358, 625, 664
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco130I	CCWWGG	2 cut(s)	322, 478
Eco147I	AGGCCT	2 cut(s)	660, 740
Eco47I	GGWCC	1 cut(s)	520
EcoO109I	RGGNCCY	1 cut(s)	520
EcoT14I	CCWWGG	2 cut(s)	322, 478
EcoT22I	ATGCAT	1 cut(s)	127
ErhI	CCWWGG	2 cut(s)	322, 478
FaeI	CATG	7 cut(s)	129, 298, 326, 374, 622, 681, 728
FaiI	YATR	8 cut(s)	127, 296, 324, 372, 620, 679, 692, 726
FatI	CATG	7 cut(s)	125, 294, 322, 370, 618, 677, 724
FblI	GTMKAC	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	633, 714
FokI	GGATG	2 cut(s)	70, 132
Fsp4HI	GCNGC	2 cut(s)	633, 714
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	2 cut(s)	633, 714
GsaI	CCCAGC	1 cut(s)	675
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	660, 740
Hin1II	CATG	7 cut(s)	129, 298, 326, 374, 622, 681, 728
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	2 cut(s)	330, 492
HphI	GGTGA	3 cut(s)	44, 248, 398
Hpy166II	GTNNAC	2 cut(s)	173, 329
Hpy188I	TCNGA	2 cut(s)	282, 384
Hpy188III	TCNNGA	3 cut(s)	56, 496, 611
Hpy8I	GTNNAC	2 cut(s)	173, 329
HpyAV	CCTTC	3 cut(s)	111, 270, 739
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	6 cut(s)	113, 125, 341, 437, 765, 783
HpyF10VI	GCNNNNNNNGC	2 cut(s)	657, 737
HpyF3I	CTNAG	5 cut(s)	136, 235, 345, 383, 543
Hsp92II	CATG	7 cut(s)	129, 298, 326, 374, 622, 681, 728
Kzo9I	GATC	3 cut(s)	358, 625, 664
LmnI	GCTCC	2 cut(s)	145, 406
LpnPI	CCDG	9 cut(s)	41, 85, 123, 146, 411, 432, 530, 555, 657
Lsp1109I	GCAGC	2 cut(s)	619, 725
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	192
MalI	GATC	3 cut(s)	360, 627, 666
MboI	GATC	3 cut(s)	358, 625, 664
MboII	GAAGA	6 cut(s)	52, 124, 280, 524, 748, 751
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	2 cut(s)	544, 733
MluCI	AATT	5 cut(s)	50, 276, 288, 349, 503
MlyI	GAGTC	1 cut(s)	324
MnlI	CCTC	7 cut(s)	97, 153, 157, 244, 293, 414, 730
Mph1103I	ATGCAT	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	3 cut(s)	11, 465, 528
MspCI	CTTAAG	1 cut(s)	527
Mva1269I	GAATGC	1 cut(s)	439
MwoI	GCNNNNNNNGC	2 cut(s)	657, 737
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	3 cut(s)	358, 625, 664
NlaIII	CATG	7 cut(s)	129, 298, 326, 374, 622, 681, 728
NlaIV	GGNNCC	3 cut(s)	99, 522, 730
NsiI	ATGCAT	1 cut(s)	127
NspI	RCATGY	3 cut(s)	129, 622, 681
PaqCI	CACCTGC	1 cut(s)	118
PceI	AGGCCT	2 cut(s)	660, 740
PctI	GAATGC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	492
PkrI	GCNGC	2 cut(s)	634, 715
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PpuMI	RGGWCCY	1 cut(s)	520
Psp5II	RGGWCCY	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	671
PspN4I	GGNNCC	3 cut(s)	99, 522, 730
PspPI	GGNCC	1 cut(s)	520
PspPPI	RGGWCCY	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
SaqAI	TTAA	3 cut(s)	11, 465, 528
SatI	GCNGC	2 cut(s)	633, 714
Sau3AI	GATC	3 cut(s)	358, 625, 664
Sau96I	GGNCC	1 cut(s)	520
ScaI	AGTACT	1 cut(s)	577
SchI	GAGTC	1 cut(s)	324
SduI	GDGCHC	2 cut(s)	544, 733
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	520
SmlI	CTYRAG	3 cut(s)	527, 698, 734
SmoI	CTYRAG	3 cut(s)	527, 698, 734
Sse9I	AATT	5 cut(s)	50, 276, 288, 349, 503
SseBI	AGGCCT	2 cut(s)	660, 740
SsiI	CCGC	2 cut(s)	105, 651
SspMI	CTAG	1 cut(s)	192
StuI	AGGCCT	2 cut(s)	660, 740
StyI	CCWWGG	2 cut(s)	322, 478
TaaI	ACNGT	1 cut(s)	47
TasI	AATT	5 cut(s)	50, 276, 288, 349, 503
TatI	WGTACW	1 cut(s)	575
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	3 cut(s)	11, 465, 528
Tru9I	TTAA	3 cut(s)	11, 465, 528
TscAI	CASTG	1 cut(s)	544
TseI	GCWGC	2 cut(s)	632, 713
TspDTI	ATGAA	2 cut(s)	252, 713
TspGWI	ACGGA	2 cut(s)	307, 323
TspRI	CASTG	1 cut(s)	544
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	3 cut(s)	50, 349, 503
XceI	RCATGY	3 cut(s)	129, 622, 681
XmiI	GTMKAC	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	1 cut(s)	192
ZrmI	AGTACT	1 cut(s)	577
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.