Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011617

Physical Location & Seq

Genomic Coordinates Forward (+)

47250160 .. 47251357

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG256300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCCCTCACTTGTACTTGACCGCGATCAGACCATAAAAAATGCCATCAAACAGGTTGAAGAAATGAGAAAAGATTTGTCTAATGCACTTCATGCTGCTGCATCTGTTGAGAGTAGACCTGCTGTAGCTGAGGATGTTGAAATTGATGGTGGGAGTGGATCTGCTTCTTTGACAGATCTGTTGAAACATGACAAGGTTCTGAACAAGAAGCCTCCTGCTCCTCACCGAGTTGTGCCTGATTATCTGTTGAATGCAACAACTAAAGAAGCCAGCAAGAGAGTTAAGCTTGCCAACCTTGGTCGCCGTGGATTCAAGAAAAAATTCAAGGAAGATAAGGACCCCCTTAAGTCTTTCAGTGCTCAGTTTATTTCCTGGAGGCCTACACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

129

Amino Acids

14.3

Weight (kDa)

9.73

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405541
rosa_laevigata	RLG00000012603 RLG00000014250 RLG00000018184 RLG00000022599 RLG00000030134 RLG00000035091 RLG00000035371
rosa_roxburghii	Rroxscaffold_2G00103110 Rroxscaffold_3G00244540
rosa_rugosa	Rorug04G0102200 Rorug06G0229300
rosa_samantha	Rh1BG178600 Rh2BG296500 Rh2CG274200 Rh2CG294400 Rh4DG256300 Rh5BG223800 Rh5BG277400 Rh6AG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	115
AccII	CGCG	1 cut(s)	24
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	320
AfaI	GTAC	1 cut(s)	15
AflII	CTTAAG	1 cut(s)	344
AgsI	TTSAA	6 cut(s)	59, 140, 184, 250, 313, 325
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	2 cut(s)	128, 286
AluI	AGCT	2 cut(s)	128, 286
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	377
ApeKI	GCWGC	2 cut(s)	95, 98
ApoI	RAATTY	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	361
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	82, 85
BccI	CCATC	2 cut(s)	53, 140
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	1 cut(s)	373
BfaI	CTAG	1 cut(s)	388
BfmI	CTRYAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	344
BfuAI	ACCTGC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	2 cut(s)	96, 99
BlsI	GCNGC	2 cut(s)	97, 100
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	373
BmsI	GCATC	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	295, 304
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	295, 304
BseGI	GGATG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	120, 374
BseRI	GAGGAG	1 cut(s)	210
BseXI	GCAGC	2 cut(s)	82, 85
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	25, 158, 175
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	2 cut(s)	121, 373
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	339
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	166
BspTI	CTTAAG	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	295, 304
BssMI	GATC	3 cut(s)	25, 158, 175
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	373
BstAFI	CTTAAG	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	271, 288
BstDEI	CTNAG	2 cut(s)	129, 360
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	24
BstKTI	GATC	3 cut(s)	28, 161, 178
BstMBI	GATC	3 cut(s)	25, 158, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	82, 85
BstX2I	RGATCY	2 cut(s)	158, 175
BstYI	RGATCY	2 cut(s)	158, 175
BsuRI	GGCC	1 cut(s)	379
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	361
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	271, 288
Cfr13I	GGNCC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	2 cut(s)	92, 188
CviJI	RGCY	5 cut(s)	128, 211, 269, 286, 379
CviKI_1	RGCY	5 cut(s)	128, 211, 269, 286, 379
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	2 cut(s)	129, 360
DpnI	GATC	3 cut(s)	27, 160, 177
DpnII	GATC	3 cut(s)	25, 158, 175
Eco130I	CCWWGG	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	2 cut(s)	95, 191
FaiI	YATR	3 cut(s)	35, 93, 189
FatI	CATG	2 cut(s)	91, 187
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	96, 99
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	96, 99
FspBI	CTAG	1 cut(s)	388
GluI	GCNGC	2 cut(s)	96, 99
HaeIII	GGCC	1 cut(s)	379
Hin1II	CATG	2 cut(s)	95, 191
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	1 cut(s)	309
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	2 cut(s)	30, 201
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	86, 101, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	129, 360
Hsp92II	CATG	2 cut(s)	95, 191
Kzo9I	GATC	3 cut(s)	25, 158, 175
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	7 cut(s)	38, 132, 228, 249, 283, 358, 385
Lsp1109I	GCAGC	2 cut(s)	82, 85
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	388
MalI	GATC	3 cut(s)	27, 160, 177
MboI	GATC	3 cut(s)	25, 158, 175
MboII	GAAGA	2 cut(s)	71, 341
MflI	RGATCY	2 cut(s)	158, 175
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	2 cut(s)	141, 320
MnlI	CCTC	5 cut(s)	16, 124, 222, 231, 369
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	2 cut(s)	282, 345
MspCI	CTTAAG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	373
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	373
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	3 cut(s)	25, 158, 175
NlaIII	CATG	2 cut(s)	95, 191
NlaIV	GGNNCC	1 cut(s)	339
PceI	AGGCCT	1 cut(s)	379
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	309
PfoI	TCCNGGA	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	97, 100
PpuMI	RGGWCCY	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	337
PspPPI	RGGWCCY	1 cut(s)	337
PsuI	RGATCY	2 cut(s)	158, 175
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	282, 345
SatI	GCNGC	2 cut(s)	96, 99
Sau3AI	GATC	3 cut(s)	25, 158, 175
Sau96I	GGNCC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	373
SduI	GDGCHC	1 cut(s)	361
SetI	ASST	6 cut(s)	57, 121, 130, 198, 288, 297
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	141, 320
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	388
StuI	AGGCCT	1 cut(s)	379
StyD4I	CCNGG	1 cut(s)	371
StyI	CCWWGG	1 cut(s)	295
TasI	AATT	2 cut(s)	141, 320
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	2 cut(s)	282, 345
Tru9I	TTAA	2 cut(s)	282, 345
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	2 cut(s)	95, 98
TspDTI	ATGAA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	361
Vha464I	CTTAAG	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.