Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011617

Physical Location & Seq

Genomic Coordinates Forward (+)

26525477 .. 26528745

Gene Structure 3269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018184

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCTCTTCTCAGCTCCTCATCCAAGAGTGCTACAGGAGAGATACAAAATACCTCAGTTCTCCACTCTTGTATTCGCCCTTCATTGAAGATTTCAATTCTGAATGGAATTATCATGGGAGGTGGGGCTGGTGCTTCCGTCCATGGTAGACTCCGTGTTGCAACTGAGAATTTGGTAGATCTATTGAAACATGACAAGGTTCTGAGCAAGAAGCCCCCTGCTCCTCACCGAGTTGTGCCTGATTATCTGTTGAATGCAACAACTAAAGAAGCCAGCAAGAGAGTTAAGCTTGCCAACCTTGGTCGCCGTGGATTCAAGAAAAAATTCAAGGAAGATAAGGACCCCCTTAAGTCTTTCAGTGCTCAGGCCTACACCCTAGTGAGGAAGGGTGATCTCTTGATTGTGAGAGGAGGAATGAGGAGTGTCGAGTTCAAGGTTATTGAGACTGATCCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

153

Amino Acids

16.52

Weight (kDa)

10.22

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	30 - 58	4e-08	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011617)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0405541
rosa_laevigata	RLG00000012603 RLG00000014250 RLG00000018184 RLG00000022599 RLG00000030134 RLG00000035091 RLG00000035371
rosa_roxburghii	Rroxscaffold_2G00103110 Rroxscaffold_3G00244540
rosa_rugosa	Rorug04G0102200 Rorug06G0229300
rosa_samantha	Rh1BG178600 Rh2BG296500 Rh2CG274200 Rh2CG294400 Rh4DG256300 Rh5BG223800 Rh5BG277400 Rh6AG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	148
AclWI	GGATC	1 cut(s)	443
AcsI	RAATTY	2 cut(s)	169, 323
AfiI	CCNNNNNNNGG	1 cut(s)	381
AflII	CTTAAG	1 cut(s)	347
AgsI	TTSAA	7 cut(s)	88, 96, 187, 253, 316, 328, 433
AleI	CACNNNNGTG	1 cut(s)	377
AluBI	AGCT	2 cut(s)	15, 289
AluI	AGCT	2 cut(s)	15, 289
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	2 cut(s)	9, 437
AlwI	GGATC	1 cut(s)	443
AoxI	GGCC	1 cut(s)	366
ApoI	RAATTY	2 cut(s)	169, 323
Asp700I	GAANNNNTTC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	2 cut(s)	218, 401
AvaII	GGWCC	1 cut(s)	340
BarI	GAAGNNNNNNTAC	2 cut(s)	64, 96
Bbv12I	GWGCWC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	9, 437
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	33
BfrI	CTTAAG	1 cut(s)	347
BglII	AGATCT	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	142, 298, 307
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
BseDI	CCNNGG	3 cut(s)	142, 298, 307
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMII	CTCAG	5 cut(s)	25, 69, 156, 194, 377
BseRI	GAGGAG	4 cut(s)	7, 213, 423, 433
BshFI	GGCC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	364
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	2 cut(s)	9, 437
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	178, 391, 448
Bsp19I	CCATGG	1 cut(s)	142
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	5 cut(s)	24, 68, 157, 195, 376
BspLI	GGNNCC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	443
BspTI	CTTAAG	1 cut(s)	347
BssECI	CCNNGG	3 cut(s)	142, 298, 307
BssMI	GATC	3 cut(s)	178, 391, 448
BssT1I	CCWWGG	2 cut(s)	142, 298
Bst6I	CTCTTC	1 cut(s)	12
BstAFI	CTTAAG	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	274, 291
BstDEI	CTNAG	5 cut(s)	11, 55, 165, 203, 363
BstDSI	CCRYGG	2 cut(s)	142, 307
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	3 cut(s)	181, 394, 451
BstMAI	GTCTC	2 cut(s)	9, 437
BstMBI	GATC	3 cut(s)	178, 391, 448
BstSFI	CTRYAG	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	368
BtgI	CCRYGG	2 cut(s)	142, 307
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	274, 291
Cfr13I	GGNCC	1 cut(s)	340
CviAII	CATG	3 cut(s)	115, 143, 191
CviJI	RGCY	6 cut(s)	15, 128, 214, 272, 289, 368
CviKI_1	RGCY	6 cut(s)	15, 128, 214, 272, 289, 368
DdeI	CTNAG	5 cut(s)	11, 55, 165, 203, 363
DpnI	GATC	3 cut(s)	180, 393, 450
DpnII	GATC	3 cut(s)	178, 391, 448
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	142, 298
Eco147I	AGGCCT	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	340
EcoO109I	RGGNCCY	1 cut(s)	340
EcoT14I	CCWWGG	2 cut(s)	142, 298
ErhI	CCWWGG	2 cut(s)	142, 298
FaeI	CATG	3 cut(s)	118, 146, 194
FaiI	YATR	3 cut(s)	116, 144, 192
FatI	CATG	3 cut(s)	114, 142, 190
FblI	GTMKAC	1 cut(s)	148
FokI	GGATG	1 cut(s)	7
FspBI	CTAG	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	368
Hin1II	CATG	3 cut(s)	118, 146, 194
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	2 cut(s)	150, 312
HphI	GGTGA	2 cut(s)	218, 401
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	102, 204
Hpy188III	TCNNGA	3 cut(s)	316, 397, 456
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	90, 379
HpyCH4V	TGCA	2 cut(s)	161, 257
HpyF3I	CTNAG	5 cut(s)	11, 55, 165, 203, 363
Hsp92II	CATG	3 cut(s)	118, 146, 194
Kzo9I	GATC	3 cut(s)	178, 391, 448
LmnI	GCTCC	2 cut(s)	20, 226
LpnPI	CCDG	6 cut(s)	21, 114, 231, 252, 286, 350
MaeI	CTAG	1 cut(s)	377
MalI	GATC	3 cut(s)	180, 393, 450
MboI	GATC	3 cut(s)	178, 391, 448
MboII	GAAGA	2 cut(s)	100, 344
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	4 cut(s)	96, 108, 169, 323
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	8 cut(s)	28, 64, 113, 234, 375, 401, 404, 411
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	2 cut(s)	285, 348
MslI	CAYNNNNRTG	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	142
NdeII	GATC	3 cut(s)	178, 391, 448
NlaIII	CATG	3 cut(s)	118, 146, 194
NlaIV	GGNNCC	1 cut(s)	342
OliI	CACNNNNGTG	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	368
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	312
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PpuMI	RGGWCCY	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	340
PspPPI	RGGWCCY	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	2 cut(s)	285, 348
Sau3AI	GATC	3 cut(s)	178, 391, 448
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	7 cut(s)	17, 56, 124, 201, 291, 300, 438
SfcI	CTRYAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	4 cut(s)	96, 108, 169, 323
SseBI	AGGCCT	1 cut(s)	368
SspMI	CTAG	1 cut(s)	377
StuI	AGGCCT	1 cut(s)	368
StyI	CCWWGG	2 cut(s)	142, 298
TaqI	TCGA	1 cut(s)	426
TasI	AATT	4 cut(s)	96, 108, 169, 323
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	2 cut(s)	285, 348
Tru9I	TTAA	2 cut(s)	285, 348
TscAI	CASTG	1 cut(s)	364
TspDTI	ATGAA	1 cut(s)	72
TspGWI	ACGGA	2 cut(s)	127, 143
TspRI	CASTG	1 cut(s)	364
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	2 cut(s)	169, 323
XmiI	GTMKAC	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.