RLG00000020671

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006966
Physical Location & Seq
Reverse (-)
67329021 .. 67330388
1368 bp
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UTR
Exon/CDS
Intron
RLM00000020671

Sequence Viewer

Length: 414 bp
ATGGAAGACTCTGTTGAAGACGCGAATGGCTTTGCTCACGGTTCCGAGGAGGTGGAGGAGCTCTCCATTCCCAGAGGTGGGCCCCTCTACGTTGAGAATCTGACCGTTCCTCTCACCAGTGTCGGTCTCTTTCAGTCTTCGATCTATTCTCCAAGAGCTTCAGAAGATCTTGAGACATCAAATGGTAAAACTTGTTATACGAAGTCAAGAAAAAGAAAAGGAATGAAGGATGATGAAGATCCTTCCGAACTTCCATCTATTCCAGAGGAACCCCCTTATGAATGGAGAGGAGACAATCCTGAGACATCAAATGAAAAATATTATGACGATGAAGGCGCTCTAAATGTTTTGCCGATTTCAGAAAAGCCTGTCAAGGAAAGGGTCGTCAGGGTGTCTCGTATCACCTTGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

138

Amino Acids

15.32

Weight (kDa)

4.52

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 23
AclWI GGATC 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 144
AfiI CCNNNNNNNGG 2 cut(s) 77, 78
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 2 cut(s) 61, 158
AluI AGCT 2 cut(s) 61, 158
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 5 cut(s) 131, 167, 285, 296, 399
AlwI GGATC 1 cut(s) 233
AoxI GGCC 1 cut(s) 80
ApaI GGGCCC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 80, 81
AsuHPI GGTGA 2 cut(s) 106, 394
BaeGI GKGCMC 1 cut(s) 84
BanII GRGCYC 2 cut(s) 63, 84
BbsI GAAGAC 3 cut(s) 12, 24, 129
Bbv12I GWGCWC 1 cut(s) 63
BccI CCATC 1 cut(s) 262
BcoDI GTCTC 5 cut(s) 131, 167, 285, 296, 399
BfoI RGCGCY 1 cut(s) 339
BglII AGATCT 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 80, 81
BmiI GGNNCC 4 cut(s) 43, 82, 83, 270
BpiI GAAGAC 3 cut(s) 12, 24, 129
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpuEI CTTGAG 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 78
Bse1I ACTGG 1 cut(s) 117
Bse8I GATNNNNATC 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 235
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 77, 78
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 117
BseRI GAGGAG 3 cut(s) 62, 71, 303
BseSI GKGCMC 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 77, 78
BsmAI GTCTC 5 cut(s) 131, 167, 285, 296, 399
BsnI GGCC 1 cut(s) 82
Bso31I GGTCTC 1 cut(s) 131
Bsp120I GGGCCC 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 63, 84
Bsp143I GATC 3 cut(s) 141, 166, 238
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 292
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 4 cut(s) 43, 82, 83, 270
BspPI GGATC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 3 cut(s) 141, 166, 238
Bst4CI ACNGT 2 cut(s) 41, 106
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 23
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 3 cut(s) 144, 169, 241
BstMAI GTCTC 5 cut(s) 131, 167, 285, 296, 399
BstMBI GATC 3 cut(s) 141, 166, 238
BstSLI GKGCMC 1 cut(s) 84
BstUI CGCG 1 cut(s) 23
BstV2I GAAGAC 3 cut(s) 12, 24, 129
BstX2I RGATCY 2 cut(s) 166, 238
BstYI RGATCY 2 cut(s) 166, 238
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 124
CfoI GCGC 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 80, 81
CseI GACGC 1 cut(s) 29
CviJI RGCY 5 cut(s) 30, 61, 82, 158, 367
CviKI_1 RGCY 5 cut(s) 30, 61, 82, 158, 367
DdeI CTNAG 1 cut(s) 300
DpnI GATC 3 cut(s) 143, 168, 240
DpnII GATC 3 cut(s) 141, 166, 238
Ecl136II GAGCTC 1 cut(s) 61
Eco24I GRGCYC 2 cut(s) 63, 84
Eco31I GGTCTC 1 cut(s) 131
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 81
EcoT38I GRGCYC 2 cut(s) 63, 84
FaiI YATR 4 cut(s) 198, 279, 324, 412
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 2 cut(s) 63, 84
GlaI GCGC 1 cut(s) 337
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 1 cut(s) 82
HgaI GACGC 1 cut(s) 29
HhaI GCGC 1 cut(s) 338
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HinfI GANTC 2 cut(s) 8, 97
HphI GGTGA 2 cut(s) 106, 394
Hpy188I TCNGA 5 cut(s) 46, 102, 163, 247, 361
Hpy188III TCNNGA 4 cut(s) 170, 207, 263, 299
HpyAV CCTTC 3 cut(s) 220, 252, 326
HpyCH4III ACNGT 2 cut(s) 41, 106
HpyCH4IV ACGT 1 cut(s) 90
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 90
HspAI GCGC 1 cut(s) 336
Kzo9I GATC 3 cut(s) 141, 166, 238
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 6 cut(s) 85, 130, 276, 312, 373, 381
MaeII ACGT 1 cut(s) 90
MalI GATC 3 cut(s) 143, 168, 240
MboI GATC 3 cut(s) 141, 166, 238
MboII GAAGA 5 cut(s) 17, 29, 129, 176, 248
MflI RGATCY 2 cut(s) 166, 238
MhlI GDGCHC 2 cut(s) 63, 84
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 8 cut(s) 40, 43, 49, 68, 95, 120, 259, 281
MvnI CGCG 1 cut(s) 23
NdeII GATC 3 cut(s) 141, 166, 238
NlaIV GGNNCC 4 cut(s) 43, 82, 83, 270
PfeI GAWTC 1 cut(s) 97
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Psp124BI GAGCTC 1 cut(s) 63
PspN4I GGNNCC 4 cut(s) 43, 82, 83, 270
PspOMI GGGCCC 1 cut(s) 80
PspPI GGNCC 2 cut(s) 80, 81
PsuI RGATCY 2 cut(s) 166, 238
SacI GAGCTC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 141, 166, 238
Sau96I GGNCC 2 cut(s) 80, 81
SchI GAGTC 1 cut(s) 2
SduI GDGCHC 2 cut(s) 63, 84
SetI ASST 6 cut(s) 54, 63, 79, 93, 160, 407
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SspI AATATT 1 cut(s) 320
SstI GAGCTC 1 cut(s) 63
TaaI ACNGT 2 cut(s) 41, 106
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 140
TaqII GACCGA 1 cut(s) 113
TfiI GAWTC 1 cut(s) 97
TscAI CASTG 1 cut(s) 124
TspDTI ATGAA 5 cut(s) 239, 249, 294, 327, 345
TspRI CASTG 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.