Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006966

Physical Location & Seq

Genomic Coordinates Reverse (-)

85345544 .. 85355885

Gene Structure 10342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG552800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAGGATAGCAGAAGATTTGAGACATCAAATGGTAAAGCTTGCTATACAAAGTCAAGAAAAAGAAAAGGAATGAAGGATGATGAAGATCCTTCCGAATTTCCATCTATTCCAGAGGAACCCCCTTATGAAAGGGTCATCAGGTTTTACACCATAATTGGGAGACCAGATGATCCTCATAAATCAAAGCTTAGATCATGCAAAGGAAAAGAAGTGAAGGCAAATACTCTTGCTATTAAGGCATGGACAAATGGTCGACTGCATTGTCCACATCATCGACACCCGATGACTGGAAATGAGGCGAAGTACTCCACTGCATTGTTGTCTTTCCCAAAAGCAGGTTACATAATAAAAGCCCCAGAGGAGGTTGTGGATGAAGAGCATCCTCTGCTTTTCAAGCCATTCGATAATGTCGAGTTTCTTGGATTTTTCTTTTCAGAGGTTGGTCAGAGAGCTCAATCTGCTTTGAAGACTTATTGTGGTGTCGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

164

Amino Acids

18.79

Weight (kDa)

8.99

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006966)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0108841
rosa_laevigata	RLG00000020671
rosa_multiflora	Rmu_sc0003830.1_g000011
rosa_roxburghii	Rroxscaffold_1G00003190 Rroxscaffold_1G00015540
rosa_rugosa	Rorug02G0436900 Rorug05G0467200
rosa_samantha	Rh2AG206800 Rh2AG498900 Rh2AG499100 Rh2BG217900 Rh2CG209900 Rh2CG485500 Rh2DG213100 Rh5AG431500 Rh5AG521000 Rh5BG447600 Rh5BG543000 Rh5CG469600 Rh5CG565800 Rh5DG460200 Rh5DG552800 Rh6CG050900
rosa_wichuraiana	Rw5G040450 Rw5G048320 Rw6G002720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	264
Acc36I	ACCTGC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	256
AclWI	GGATC	2 cut(s)	83, 167
AcsI	RAATTY	1 cut(s)	98
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	4 cut(s)	159, 290, 338, 364
AgsI	TTSAA	2 cut(s)	397, 469
AhdI	GACNNNNNGTC	1 cut(s)	252
AluBI	AGCT	3 cut(s)	41, 190, 455
AluI	AGCT	3 cut(s)	41, 190, 455
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	2 cut(s)	17, 157
AlwI	GGATC	2 cut(s)	83, 167
ApoI	RAATTY	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	457
BccI	CCATC	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	17, 157
BfaI	CTAG	1 cut(s)	493
BfuAI	ACCTGC	1 cut(s)	329
BmcAI	AGTACT	1 cut(s)	308
BmeRI	GACNNNNNGTC	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	120
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	476
BsaBI	GATNNNNATC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 290, 338, 364
Bse1I	ACTGG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	87
BseGI	GGATG	3 cut(s)	85, 379, 382
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	4 cut(s)	159, 290, 338, 364
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	457
BslI	CCNNNNNNNGG	4 cut(s)	159, 290, 338, 364
BsmAI	GTCTC	2 cut(s)	17, 157
Bso31I	GGTCTC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	3 cut(s)	88, 172, 194
BspLI	GGNNCC	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	329
BspPI	GGATC	2 cut(s)	83, 167
BspQI	GCTCTTC	1 cut(s)	372
BspTNI	GGTCTC	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	295
BssMI	GATC	3 cut(s)	88, 172, 194
Bst6I	CTCTTC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	191
BstF5I	GGATG	3 cut(s)	85, 379, 382
BstKTI	GATC	3 cut(s)	91, 175, 197
BstMAI	GTCTC	2 cut(s)	17, 157
BstMBI	GATC	3 cut(s)	88, 172, 194
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 388, 397, 461
BstV2I	GAAGAC	1 cut(s)	476
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BtsCI	GGATG	3 cut(s)	85, 379, 382
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	312
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	2 cut(s)	198, 243
CviJI	RGCY	5 cut(s)	41, 190, 356, 400, 455
CviKI_1	RGCY	5 cut(s)	41, 190, 356, 400, 455
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	3 cut(s)	90, 174, 196
DpnII	GATC	3 cut(s)	88, 172, 194
DrdI	GACNNNNNNGTC	1 cut(s)	264
DriI	GACNNNNNGTC	1 cut(s)	252
DseDI	GACNNNNNNGTC	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	372
Eam1105I	GACNNNNNGTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	455
EcoT38I	GRGCYC	1 cut(s)	457
FaeI	CATG	2 cut(s)	201, 246
FaiI	YATR	7 cut(s)	48, 129, 155, 180, 199, 244, 347
FatI	CATG	2 cut(s)	197, 242
FblI	GTMKAC	1 cut(s)	256
FokI	GGATG	3 cut(s)	92, 369, 386
FriOI	GRGCYC	1 cut(s)	457
FspBI	CTAG	1 cut(s)	493
Hin1II	CATG	2 cut(s)	201, 246
HincII	GTYRAC	1 cut(s)	257
HindII	GTYRAC	1 cut(s)	257
HindIII	AAGCTT	2 cut(s)	39, 188
Hpy166II	GTNNAC	2 cut(s)	257, 269
Hpy188I	TCNGA	3 cut(s)	97, 439, 450
Hpy188III	TCNNGA	2 cut(s)	57, 113
Hpy8I	GTNNAC	2 cut(s)	257, 269
HpyAV	CCTTC	3 cut(s)	70, 102, 211
HpyCH4V	TGCA	3 cut(s)	201, 262, 317
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 388, 397, 461
HpyF3I	CTNAG	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	201, 246
Kzo9I	GATC	3 cut(s)	88, 172, 194
LguI	GCTCTTC	1 cut(s)	372
LpnPI	CCDG	6 cut(s)	126, 127, 180, 276, 324, 372
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	1 cut(s)	493
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	3 cut(s)	90, 174, 196
MboI	GATC	3 cut(s)	88, 172, 194
MboII	GAAGA	4 cut(s)	27, 98, 389, 481
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	2 cut(s)	98, 156
MnlI	CCTC	7 cut(s)	109, 186, 292, 355, 358, 396, 433
MseI	TTAA	1 cut(s)	237
MwoI	GCNNNNNNNGC	4 cut(s)	239, 388, 397, 461
NdeII	GATC	3 cut(s)	88, 172, 194
NlaIII	CATG	2 cut(s)	201, 246
NlaIV	GGNNCC	1 cut(s)	120
PciSI	GCTCTTC	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	457
SalI	GTCGAC	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	3 cut(s)	88, 172, 194
ScaI	AGTACT	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	457
SetI	ASST	7 cut(s)	43, 146, 192, 343, 369, 444, 457
SfaNI	GCATC	1 cut(s)	391
Sse9I	AATT	2 cut(s)	98, 156
SspMI	CTAG	1 cut(s)	493
SstI	GAGCTC	1 cut(s)	457
TaqI	TCGA	5 cut(s)	256, 277, 405, 414, 486
TasI	AATT	2 cut(s)	98, 156
TatI	WGTACW	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	319
TspDTI	ATGAA	5 cut(s)	17, 89, 99, 144, 390
TspRI	CASTG	1 cut(s)	319
XapI	RAATTY	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	256
XspI	CTAG	1 cut(s)	493
ZrmI	AGTACT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.