Rh2AG498900

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006966
Physical Location & Seq
Reverse (-)
72090354 .. 72097378
7025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG498900.1

Sequence Viewer

Length: 1056 bp
ATGGAAGACTATGTTGAAGACGCTAATGGCTTTGCTCACGGTTCCGAGGAGGTGGAGGAGCTCACGGTTCCCAGAGGTGGGCCCCTCTACGTTGAGAATCTGACCGGTCCTCTCACCAGTGTCGGTCTCTTCCAGTCTTCTGTTCTCCAAGAGCTTCAGGATTTGGAGGTGGAATTGGCTTCGGGTTCTTCCCAAGTCTGCGACGAAGAAGATACCTCGGTGGATGAGCTTAAGATCATGAGTGAGGAGGAGTTGGTGGATATGGCTATTAAGGAAGTACTTAAGGACGATGAATGTGTTCCCAAATCTTCGCCTGTTTCAGAAGAGCCCTCCAATGAAGGGATAGCAGAACATCCTGAGACACCAAATGGTAAAATCTGTTATATGAAGTCAAGAAAAAGAAAAGGAATGAAGGATGATGAAGATCCTTCCGAACTTCCATCTATTCCAGAGGAACCCCCTTCTGAAAGGAGAGGAGACAATCCTGAGACATCAAATGAAAAATATTATATAACGTATTCAAGGAGAAGAAGAAGAATATTGAAGGACGACGAAGGTGCTCTAAATGTTTTGCCAATTTCAGAAAAGCCTCTCAAGGAAAGGAGACCAGATGATCCTCATAAATCAGAACTTAGATCATGCAAAGGAAAAGAAGTGAAGACAAATTATCTTGCTATTAAGGATGATGAAGATGCCTTCAATCTTTTGTCTATTCCGGAAGAGCCCTTTAATGAAAGGAGAGCAGATGATCCTGACACGTCAAATCATAAAATTTGTGTAAGGAAATCAAGGAAGAGAAAAGGTATGAAGGCAAATAGTCATTCTCTTGAGAGAAATGATACGGAGAAGAAGGCTTTTTGGTCACAAATTGCAAAGAAGGTTGAGTATATTAAAAAAATCAAAGAAAAGCAGGATGAGGATAAAGCAGCTGTGACACTACATTCATTCAACCGTAATTTGAAAATCAAGGGTCGTGCCAGTGCATCCTCAGGGACAGCTGAAAGGATGAAACCCCTCAGATCTGCAAGTGCAGCAGTGAAGTGTTGTGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

351

Amino Acids

39.57

Weight (kDa)

5.29

Isoelectric Point (pI)

58.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 715
AclWI GGATC 3 cut(s) 419, 608, 743
AcsI RAATTY 1 cut(s) 771
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 3 cut(s) 77, 78, 339
AflII CTTAAG 2 cut(s) 230, 281
AflIII ACRYGT 1 cut(s) 756
AgeI ACCGGT 1 cut(s) 104
AgsI TTSAA 6 cut(s) 17, 522, 544, 700, 949, 961
AjiI CACGTC 1 cut(s) 759
AluBI AGCT 5 cut(s) 61, 154, 229, 929, 998
AluI AGCT 5 cut(s) 61, 154, 229, 929, 998
Alw21I GWGCWC 2 cut(s) 63, 562
Alw26I GTCTC 5 cut(s) 131, 353, 471, 482, 598
AlwI GGATC 3 cut(s) 419, 608, 743
Aor13HI TCCGGA 1 cut(s) 715
AoxI GGCC 1 cut(s) 80
ApaI GGGCCC 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 926, 1031
ApoI RAATTY 1 cut(s) 771
AsiGI ACCGGT 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 297
AspS9I GGNCC 3 cut(s) 80, 81, 107
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 107
AxyI CCTNAGG 1 cut(s) 988
BaeGI GKGCMC 1 cut(s) 84
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BanII GRGCYC 4 cut(s) 63, 84, 330, 726
BbsI GAAGAC 4 cut(s) 12, 24, 129, 665
Bbv12I GWGCWC 2 cut(s) 63, 562
BbvI GCAGC 2 cut(s) 938, 1043
BccI CCATC 1 cut(s) 448
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BcoDI GTCTC 5 cut(s) 131, 353, 471, 482, 598
BfrI CTTAAG 2 cut(s) 230, 281
BglII AGATCT 1 cut(s) 1019
BisI GCNGC 2 cut(s) 927, 1032
BlsI GCNGC 2 cut(s) 928, 1033
BmcAI AGTACT 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 107
BmgBI CACGTC 1 cut(s) 759
BmgT120I GGNCC 3 cut(s) 80, 81, 107
BmiI GGNNCC 5 cut(s) 43, 69, 82, 83, 456
BmsI GCATC 2 cut(s) 682, 992
BpiI GAAGAC 4 cut(s) 12, 24, 129, 665
BpuEI CTTGAG 2 cut(s) 578, 848
BsaBI GATNNNNATC 1 cut(s) 423
BsaI GGTCTC 2 cut(s) 131, 598
BsaJI CCNNGG 2 cut(s) 45, 216
BsaWI WCCGGW 2 cut(s) 104, 715
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 78, 339
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 3 cut(s) 117, 133, 978
Bse21I CCTNAGG 1 cut(s) 988
Bse8I GATNNNNATC 1 cut(s) 423
BseAI TCCGGA 1 cut(s) 715
BseDI CCNNGG 2 cut(s) 45, 216
BseGI GGATG 7 cut(s) 229, 352, 421, 688, 919, 983, 1011
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 3 cut(s) 77, 78, 339
BseMII CTCAG 4 cut(s) 348, 477, 1002, 1030
BseNI ACTGG 3 cut(s) 117, 133, 978
BseRI GAGGAG 5 cut(s) 62, 71, 260, 263, 489
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 2 cut(s) 938, 1043
BsgI GTGCAG 1 cut(s) 1050
BshFI GGCC 1 cut(s) 82
BshTI ACCGGT 1 cut(s) 104
BsiHKAI GWGCWC 2 cut(s) 63, 562
BsiSI CCGG 2 cut(s) 105, 716
BslFI GGGAC 1 cut(s) 1006
BslI CCNNNNNNNGG 3 cut(s) 77, 78, 339
BsmAI GTCTC 5 cut(s) 131, 353, 471, 482, 598
BsmFI GGGAC 1 cut(s) 1006
BsnI GGCC 1 cut(s) 82
Bso31I GGTCTC 2 cut(s) 131, 598
Bsp120I GGGCCC 1 cut(s) 80
Bsp1286I GDGCHC 5 cut(s) 63, 84, 330, 562, 726
Bsp13I TCCGGA 1 cut(s) 715
Bsp143I GATC 6 cut(s) 234, 424, 613, 635, 748, 1019
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 4 cut(s) 349, 478, 1001, 1029
BspEI TCCGGA 1 cut(s) 715
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 5 cut(s) 43, 69, 82, 83, 456
BspPI GGATC 3 cut(s) 419, 608, 743
BspQI GCTCTTC 2 cut(s) 318, 714
BspTI CTTAAG 2 cut(s) 230, 281
BspTNI GGTCTC 2 cut(s) 131, 598
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 3 cut(s) 117, 133, 978
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 45, 216
BssMI GATC 6 cut(s) 234, 424, 613, 635, 748, 1019
Bst4CI ACNGT 3 cut(s) 41, 67, 953
Bst6I CTCTTC 4 cut(s) 134, 318, 714, 788
BstAFI CTTAAG 2 cut(s) 230, 281
BstDEI CTNAG 5 cut(s) 357, 486, 632, 988, 1016
BstF5I GGATG 7 cut(s) 229, 352, 421, 688, 919, 983, 1011
BstKTI GATC 6 cut(s) 237, 427, 616, 638, 751, 1022
BstMAI GTCTC 5 cut(s) 131, 353, 471, 482, 598
BstMBI GATC 6 cut(s) 234, 424, 613, 635, 748, 1019
BstMWI GCNNNNNNNGC 1 cut(s) 1031
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 938, 1043
BstV2I GAAGAC 4 cut(s) 12, 24, 129, 665
BstX2I RGATCY 2 cut(s) 424, 1019
BstYI RGATCY 2 cut(s) 424, 1019
Bsu36I CCTNAGG 1 cut(s) 988
BsuRI GGCC 1 cut(s) 82
BtrI CACGTC 1 cut(s) 759
BtsCI GGATG 7 cut(s) 229, 352, 421, 688, 919, 983, 1011
BtsI GCAGTG 1 cut(s) 1041
BtsIMutI CAGTG 3 cut(s) 124, 985, 1041
CciI TCATGA 1 cut(s) 237
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 3 cut(s) 80, 81, 107
CseI GACGC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 278
CspAI ACCGGT 1 cut(s) 104
CviAII CATG 2 cut(s) 238, 639
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 5 cut(s) 357, 486, 632, 988, 1016
DpnI GATC 6 cut(s) 236, 426, 615, 637, 750, 1021
DpnII GATC 6 cut(s) 234, 424, 613, 635, 748, 1019
Eam1104I CTCTTC 4 cut(s) 134, 318, 714, 788
EarI CTCTTC 4 cut(s) 134, 318, 714, 788
Ecl136II GAGCTC 1 cut(s) 61
Eco24I GRGCYC 4 cut(s) 63, 84, 330, 726
Eco31I GGTCTC 2 cut(s) 131, 598
Eco47I GGWCC 1 cut(s) 107
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 140
Eco81I CCTNAGG 1 cut(s) 988
EcoICRI GAGCTC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 81
EcoT38I GRGCYC 4 cut(s) 63, 84, 330, 726
FaeI CATG 2 cut(s) 241, 642
FaqI GGGAC 1 cut(s) 1006
FatI CATG 2 cut(s) 237, 638
Fnu4HI GCNGC 2 cut(s) 927, 1032
FokI GGATG 7 cut(s) 236, 339, 428, 695, 926, 970, 1018
FriOI GRGCYC 4 cut(s) 63, 84, 330, 726
Fsp4HI GCNGC 2 cut(s) 927, 1032
GluI GCNGC 2 cut(s) 927, 1032
HaeIII GGCC 1 cut(s) 82
HapII CCGG 2 cut(s) 105, 716
HgaI GACGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 241, 642
HinfI GANTC 1 cut(s) 97
HpaII CCGG 2 cut(s) 105, 716
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 8 cut(s) 46, 102, 322, 433, 466, 583, 628, 1019
Hpy188III TCNNGA 9 cut(s) 158, 238, 356, 393, 449, 485, 716, 752, 827
Hpy99I CGWCG 2 cut(s) 206, 554
HpyCH4III ACNGT 3 cut(s) 41, 67, 953
HpyCH4IV ACGT 3 cut(s) 90, 515, 758
HpyCH4V TGCA 5 cut(s) 642, 872, 983, 1025, 1031
HpyF10VI GCNNNNNNNGC 1 cut(s) 1031
HpyF3I CTNAG 5 cut(s) 357, 486, 632, 988, 1016
HpySE526I ACGT 3 cut(s) 90, 515, 758
Hsp92II CATG 2 cut(s) 241, 642
Kpn2I TCCGGA 1 cut(s) 715
Kzo9I GATC 6 cut(s) 234, 424, 613, 635, 748, 1019
LguI GCTCTTC 2 cut(s) 318, 714
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 2 cut(s) 938, 1043
LweI GCATC 2 cut(s) 682, 992
MaeII ACGT 3 cut(s) 90, 515, 758
MaeIII GTNAC 2 cut(s) 861, 931
MalI GATC 6 cut(s) 236, 426, 615, 637, 750, 1021
MboI GATC 6 cut(s) 234, 424, 613, 635, 748, 1019
MflI RGATCY 2 cut(s) 424, 1019
MhlI GDGCHC 5 cut(s) 63, 84, 330, 562, 726
MluCI AATT 7 cut(s) 173, 576, 664, 771, 867, 955, 1051
MroI TCCGGA 1 cut(s) 715
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 7 cut(s) 231, 270, 282, 678, 729, 891, 1054
MspA1I CMGCKG 2 cut(s) 929, 998
MspCI CTTAAG 2 cut(s) 230, 281
MspI CCGG 2 cut(s) 105, 716
MwoI GCNNNNNNNGC 1 cut(s) 1031
NdeII GATC 6 cut(s) 234, 424, 613, 635, 748, 1019
NlaIII CATG 2 cut(s) 241, 642
NlaIV GGNNCC 5 cut(s) 43, 69, 82, 83, 456
NmuCI GTSAC 2 cut(s) 861, 931
PagI TCATGA 1 cut(s) 237
PciSI GCTCTTC 2 cut(s) 318, 714
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 97
PinAI ACCGGT 1 cut(s) 104
PkrI GCNGC 2 cut(s) 928, 1033
Psp124BI GAGCTC 1 cut(s) 63
PspN4I GGNNCC 5 cut(s) 43, 69, 82, 83, 456
PspOMI GGGCCC 1 cut(s) 80
PspPI GGNCC 3 cut(s) 80, 81, 107
PsuI RGATCY 2 cut(s) 424, 1019
PvuII CAGCTG 2 cut(s) 929, 998
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SacI GAGCTC 1 cut(s) 63
SapI GCTCTTC 2 cut(s) 318, 714
SaqAI TTAA 7 cut(s) 231, 270, 282, 678, 729, 891, 1054
SatI GCNGC 2 cut(s) 927, 1032
Sau3AI GATC 6 cut(s) 234, 424, 613, 635, 748, 1019
Sau96I GGNCC 3 cut(s) 80, 81, 107
ScaI AGTACT 1 cut(s) 279
SduI GDGCHC 5 cut(s) 63, 84, 330, 562, 726
SfaNI GCATC 2 cut(s) 682, 992
SinI GGWCC 1 cut(s) 107
SmlI CTYRAG 4 cut(s) 230, 281, 593, 827
SmoI CTYRAG 4 cut(s) 230, 281, 593, 827
Sse9I AATT 7 cut(s) 173, 576, 664, 771, 867, 955, 1051
SspI AATATT 2 cut(s) 506, 540
SstI GAGCTC 1 cut(s) 63
TaaI ACNGT 3 cut(s) 41, 67, 953
TaiI ACGT 3 cut(s) 93, 518, 761
TaqII GACCGA 1 cut(s) 113
TasI AATT 7 cut(s) 173, 576, 664, 771, 867, 955, 1051
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 7 cut(s) 231, 270, 282, 678, 729, 891, 1054
Tru9I TTAA 7 cut(s) 231, 270, 282, 678, 729, 891, 1054
TscAI CASTG 3 cut(s) 124, 985, 1041
TseFI GTSAC 2 cut(s) 861, 931
TseI GCWGC 2 cut(s) 926, 1031
Tsp45I GTSAC 2 cut(s) 861, 931
TspGWI ACGGA 1 cut(s) 857
TspRI CASTG 3 cut(s) 124, 985, 1041
Vha464I CTTAAG 2 cut(s) 230, 281
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 1 cut(s) 771
XmnI GAANNNNTTC 1 cut(s) 297
ZrmI AGTACT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.