Rmu_sc0003830.1_g000011

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003830.1
OG0006966
Physical Location & Seq
Forward (+)
46821 .. 49576
2756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003830.1_g000011.1.cds

Sequence Viewer

Length: 741 bp
atggaagactatgttgaagacgctaatggctttgctcacggttccgaggaggtggaggagctcacggttcccagaggtgggcccctctacgttgagaatctgaccggtcctctcaccagtgtcggtctcttccagtcttctgttctccaagagcttcaggatttggaggtggaattggcttcgggttcttcccaagtctgcgacgaggaagatatctcggtggatgagcttaagatcatgagtgaggaggagttggtggatatggctattaaggaagtacttaaggacgatgaatgtgttcccaaatcttcgccggtttcagaagagccctccgatgaagggatagcagaacatcctgagaccccaaatggtaaaatctgttatacgaagtcaagaaaaagaaaaggaatgaaggatgatgaagatccttccgaacttccatctattccagaggaacccccttctgaaaggagaggagacaatcctgagacatcaaatgaaaaatattatataacgtattcaaggagaagaagaagaatattgaaggacgacgaaggtgctctaaatgttttaccgatttcagaaaagcctctcaaggaaaggagaccagatgatcctcataaatcagaacttagatcatgcaaaggaaaagaagtgaagacaaattctcttgctattaaggatgatgaagatgccctcaatcttttgtctattccggaagagccctttaatgaaaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

246

Amino Acids

27.65

Weight (kDa)

4.47

Isoelectric Point (pI)

71.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 715
AclWI GGATC 2 cut(s) 419, 608
AcsI RAATTY 1 cut(s) 664
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 3 cut(s) 77, 78, 339
AflII CTTAAG 2 cut(s) 230, 281
AgeI ACCGGT 1 cut(s) 104
AgsI TTSAA 3 cut(s) 17, 522, 544
AluBI AGCT 3 cut(s) 61, 154, 229
AluI AGCT 3 cut(s) 61, 154, 229
Alw21I GWGCWC 2 cut(s) 63, 562
Alw26I GTCTC 5 cut(s) 131, 353, 471, 482, 598
AlwI GGATC 2 cut(s) 419, 608
Aor13HI TCCGGA 1 cut(s) 715
AoxI GGCC 1 cut(s) 80
ApaI GGGCCC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 664
AsiGI ACCGGT 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 297
AspS9I GGNCC 3 cut(s) 80, 81, 107
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 84
BanII GRGCYC 4 cut(s) 63, 84, 330, 726
BbsI GAAGAC 4 cut(s) 12, 24, 129, 665
Bbv12I GWGCWC 2 cut(s) 63, 562
BccI CCATC 1 cut(s) 448
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BcoDI GTCTC 5 cut(s) 131, 353, 471, 482, 598
BfrI CTTAAG 2 cut(s) 230, 281
BmcAI AGTACT 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 3 cut(s) 80, 81, 107
BmiI GGNNCC 5 cut(s) 43, 69, 82, 83, 456
BmsI GCATC 1 cut(s) 682
BpiI GAAGAC 4 cut(s) 12, 24, 129, 665
BpuEI CTTGAG 1 cut(s) 578
BsaBI GATNNNNATC 1 cut(s) 423
BsaI GGTCTC 3 cut(s) 131, 353, 598
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 2 cut(s) 104, 715
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 78, 339
Bse118I RCCGGY 2 cut(s) 104, 313
Bse1I ACTGG 2 cut(s) 117, 133
Bse8I GATNNNNATC 1 cut(s) 423
BseAI TCCGGA 1 cut(s) 715
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 4 cut(s) 229, 352, 421, 688
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 3 cut(s) 77, 78, 339
BseMII CTCAG 2 cut(s) 348, 477
BseNI ACTGG 2 cut(s) 117, 133
BseRI GAGGAG 5 cut(s) 62, 71, 260, 263, 489
BseSI GKGCMC 1 cut(s) 84
BshFI GGCC 1 cut(s) 82
BshTI ACCGGT 1 cut(s) 104
BsiHKAI GWGCWC 2 cut(s) 63, 562
BsiSI CCGG 3 cut(s) 105, 314, 716
BslI CCNNNNNNNGG 3 cut(s) 77, 78, 339
BsmAI GTCTC 5 cut(s) 131, 353, 471, 482, 598
BsnI GGCC 1 cut(s) 82
Bso31I GGTCTC 3 cut(s) 131, 353, 598
Bsp120I GGGCCC 1 cut(s) 80
Bsp1286I GDGCHC 5 cut(s) 63, 84, 330, 562, 726
Bsp13I TCCGGA 1 cut(s) 715
Bsp143I GATC 4 cut(s) 234, 424, 613, 635
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 2 cut(s) 349, 478
BspEI TCCGGA 1 cut(s) 715
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 5 cut(s) 43, 69, 82, 83, 456
BspPI GGATC 2 cut(s) 419, 608
BspQI GCTCTTC 2 cut(s) 318, 714
BspTI CTTAAG 2 cut(s) 230, 281
BspTNI GGTCTC 3 cut(s) 131, 353, 598
BsrFI RCCGGY 2 cut(s) 104, 313
BsrI ACTGG 2 cut(s) 117, 133
BssAI RCCGGY 2 cut(s) 104, 313
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 4 cut(s) 234, 424, 613, 635
Bst4CI ACNGT 2 cut(s) 41, 67
Bst6I CTCTTC 3 cut(s) 134, 318, 714
BstAFI CTTAAG 2 cut(s) 230, 281
BstDEI CTNAG 3 cut(s) 357, 486, 632
BstF5I GGATG 4 cut(s) 229, 352, 421, 688
BstKTI GATC 4 cut(s) 237, 427, 616, 638
BstMAI GTCTC 5 cut(s) 131, 353, 471, 482, 598
BstMBI GATC 4 cut(s) 234, 424, 613, 635
BstSLI GKGCMC 1 cut(s) 84
BstV2I GAAGAC 4 cut(s) 12, 24, 129, 665
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 4 cut(s) 229, 352, 421, 688
BtsIMutI CAGTG 1 cut(s) 124
CciI TCATGA 1 cut(s) 237
Cfr10I RCCGGY 2 cut(s) 104, 313
Cfr13I GGNCC 3 cut(s) 80, 81, 107
CseI GACGC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 278
CspAI ACCGGT 1 cut(s) 104
CviAII CATG 2 cut(s) 238, 639
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 3 cut(s) 357, 486, 632
DpnI GATC 4 cut(s) 236, 426, 615, 637
DpnII GATC 4 cut(s) 234, 424, 613, 635
Eam1104I CTCTTC 3 cut(s) 134, 318, 714
EarI CTCTTC 3 cut(s) 134, 318, 714
Ecl136II GAGCTC 1 cut(s) 61
Eco24I GRGCYC 4 cut(s) 63, 84, 330, 726
Eco31I GGTCTC 3 cut(s) 131, 353, 598
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 107
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 81
EcoRV GATATC 1 cut(s) 214
EcoT38I GRGCYC 4 cut(s) 63, 84, 330, 726
FaeI CATG 2 cut(s) 241, 642
FaiI YATR 8 cut(s) 12, 239, 263, 384, 510, 512, 621, 640
FatI CATG 2 cut(s) 237, 638
FokI GGATG 4 cut(s) 236, 339, 428, 695
FriOI GRGCYC 4 cut(s) 63, 84, 330, 726
HaeIII GGCC 1 cut(s) 82
HapII CCGG 3 cut(s) 105, 314, 716
HgaI GACGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 241, 642
HinfI GANTC 1 cut(s) 97
HpaII CCGG 3 cut(s) 105, 314, 716
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 8 cut(s) 46, 102, 322, 334, 433, 466, 583, 628
Hpy188III TCNNGA 7 cut(s) 158, 238, 356, 393, 449, 485, 716
Hpy99I CGWCG 2 cut(s) 206, 554
HpyAV CCTTC 6 cut(s) 332, 406, 438, 471, 538, 548
HpyCH4III ACNGT 2 cut(s) 41, 67
HpyCH4IV ACGT 2 cut(s) 90, 515
HpyCH4V TGCA 1 cut(s) 642
HpyF3I CTNAG 3 cut(s) 357, 486, 632
HpySE526I ACGT 2 cut(s) 90, 515
Hsp92II CATG 2 cut(s) 241, 642
Kpn2I TCCGGA 1 cut(s) 715
Kzo9I GATC 4 cut(s) 234, 424, 613, 635
LguI GCTCTTC 2 cut(s) 318, 714
LmnI GCTCC 1 cut(s) 58
LweI GCATC 1 cut(s) 682
MaeII ACGT 2 cut(s) 90, 515
MalI GATC 4 cut(s) 236, 426, 615, 637
MboI GATC 4 cut(s) 234, 424, 613, 635
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 5 cut(s) 63, 84, 330, 562, 726
MluCI AATT 2 cut(s) 173, 664
MroI TCCGGA 1 cut(s) 715
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 5 cut(s) 231, 270, 282, 678, 729
MspCI CTTAAG 2 cut(s) 230, 281
MspI CCGG 3 cut(s) 105, 314, 716
NdeII GATC 4 cut(s) 234, 424, 613, 635
NlaIII CATG 2 cut(s) 241, 642
NlaIV GGNNCC 5 cut(s) 43, 69, 82, 83, 456
PagI TCATGA 1 cut(s) 237
PciSI GCTCTTC 2 cut(s) 318, 714
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 97
PinAI ACCGGT 1 cut(s) 104
Psp124BI GAGCTC 1 cut(s) 63
PspN4I GGNNCC 5 cut(s) 43, 69, 82, 83, 456
PspOMI GGGCCC 1 cut(s) 80
PspPI GGNCC 3 cut(s) 80, 81, 107
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SacI GAGCTC 1 cut(s) 63
SapI GCTCTTC 2 cut(s) 318, 714
SaqAI TTAA 5 cut(s) 231, 270, 282, 678, 729
Sau3AI GATC 4 cut(s) 234, 424, 613, 635
Sau96I GGNCC 3 cut(s) 80, 81, 107
ScaI AGTACT 1 cut(s) 279
SduI GDGCHC 5 cut(s) 63, 84, 330, 562, 726
SfaNI GCATC 1 cut(s) 682
SinI GGWCC 1 cut(s) 107
SmlI CTYRAG 3 cut(s) 230, 281, 593
SmoI CTYRAG 3 cut(s) 230, 281, 593
Sse9I AATT 2 cut(s) 173, 664
SspI AATATT 2 cut(s) 506, 540
SstI GAGCTC 1 cut(s) 63
TaaI ACNGT 2 cut(s) 41, 67
TaiI ACGT 2 cut(s) 93, 518
TaqII GACCGA 1 cut(s) 113
TasI AATT 2 cut(s) 173, 664
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 5 cut(s) 231, 270, 282, 678, 729
Tru9I TTAA 5 cut(s) 231, 270, 282, 678, 729
TscAI CASTG 1 cut(s) 124
TspDTI ATGAA 6 cut(s) 306, 351, 425, 435, 513, 702
TspRI CASTG 1 cut(s) 124
Vha464I CTTAAG 2 cut(s) 230, 281
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 1 cut(s) 664
XmnI GAANNNNTTC 1 cut(s) 297
ZrmI AGTACT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.