Rw6G002720

snRNA-activating protein complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0006966
Physical Location & Seq
Reverse (-)
4409687 .. 4411339
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002720.1

Sequence Viewer

Length: 294 bp
ATGTGTTCCCAATCCTTCGCCTGTTTCAGATCAGAGCCCTCCAATGAAGGGATAGCAGAAGATCCTGAGACATCAAATGGTAAAACTTGTTATACGAAGTCAAGAAAAAGAAAAGGAATGAAGGATGATGAAGATCCTTCCGAATTTCCATCTATTCCAGAGGAACCCCCTTATGAAAGGAGACCAGATGATCCTCATAAATCAAAGCTTAGATCCTGCAAAGGAAAAGAAGTGAAGGCAAATAATCTTGCTATTAAGGATGATGAAGATGCCCCCCTTATTATGTCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-SNAP50_C

Protein Analysis

97

Amino Acids

10.94

Weight (kDa)

5.22

Isoelectric Point (pI)

77.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 56, 128, 185, 207
AcsI RAATTY 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw26I GTCTC 2 cut(s) 62, 175
AlwI GGATC 4 cut(s) 56, 128, 185, 207
ApoI RAATTY 1 cut(s) 143
BanII GRGCYC 1 cut(s) 39
BccI CCATC 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 62, 175
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 1 cut(s) 259
BsaBI GATNNNNATC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 132
BseGI GGATG 2 cut(s) 130, 265
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 62, 175
Bso31I GGTCTC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 5 cut(s) 29, 61, 133, 190, 212
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 4 cut(s) 56, 128, 185, 207
BspTNI GGTCTC 1 cut(s) 175
BssMI GATC 5 cut(s) 29, 61, 133, 190, 212
BstDEI CTNAG 2 cut(s) 66, 209
BstF5I GGATG 2 cut(s) 130, 265
BstKTI GATC 5 cut(s) 32, 64, 136, 193, 215
BstMAI GTCTC 2 cut(s) 62, 175
BstMBI GATC 5 cut(s) 29, 61, 133, 190, 212
BstX2I RGATCY 3 cut(s) 61, 133, 212
BstYI RGATCY 3 cut(s) 61, 133, 212
BtsCI GGATG 2 cut(s) 130, 265
CviJI RGCY 2 cut(s) 37, 208
CviKI_1 RGCY 2 cut(s) 37, 208
DdeI CTNAG 2 cut(s) 66, 209
DpnI GATC 5 cut(s) 31, 63, 135, 192, 214
DpnII GATC 5 cut(s) 29, 61, 133, 190, 212
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 39
FaiI YATR 5 cut(s) 93, 174, 198, 284, 292
FokI GGATG 2 cut(s) 137, 272
FriOI GRGCYC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 29, 34, 142
Hpy188III TCNNGA 3 cut(s) 65, 102, 158
HpyAV CCTTC 5 cut(s) 25, 41, 115, 147, 229
HpyCH4V TGCA 1 cut(s) 219
HpyF3I CTNAG 2 cut(s) 66, 209
Kzo9I GATC 5 cut(s) 29, 61, 133, 190, 212
LpnPI CCDG 5 cut(s) 34, 78, 171, 198, 229
LweI GCATC 1 cut(s) 259
MalI GATC 5 cut(s) 31, 63, 135, 192, 214
MboI GATC 5 cut(s) 29, 61, 133, 190, 212
MboII GAAGA 3 cut(s) 71, 143, 278
MflI RGATCY 3 cut(s) 61, 133, 212
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 1 cut(s) 143
MnlI CCTC 3 cut(s) 49, 154, 204
MseI TTAA 1 cut(s) 255
NdeII GATC 5 cut(s) 29, 61, 133, 190, 212
NlaIV GGNNCC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 165
PsuI RGATCY 3 cut(s) 61, 133, 212
SaqAI TTAA 1 cut(s) 255
Sau3AI GATC 5 cut(s) 29, 61, 133, 190, 212
SduI GDGCHC 1 cut(s) 39
SetI ASST 1 cut(s) 210
SfaNI GCATC 1 cut(s) 259
SgeI CNNG 8 cut(s) 33, 77, 99, 114, 170, 197, 228, 260
Sse9I AATT 1 cut(s) 143
TasI AATT 1 cut(s) 143
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TspDTI ATGAA 5 cut(s) 60, 134, 144, 189, 279
XapI RAATTY 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.