Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006966

Physical Location & Seq

Genomic Coordinates Forward (+)

5147557 .. 5149507

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG050900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCCCTCGCTCTCCTCAACGGTGACTCCGGTGACGACTATGTTGAAGACGCTAATGGCTTTAGTGGTGAGGAGGAGGAGCTCTCGGTTTCAAGAGGTGGGTCCGTCTACATTGAGAGTCTGAGTGGTCCTCTCACCAATGTCGGTCTCTTCCAGTCTTCTATTCTCCAAGAGCTTCAGGATTTGGAGTTGGAGTTGGCTTCAGGTTCATCGCAACTTATTCAAAGAGTTGAAAGAGATAGAGACCGCAGGATTTTTTTGATAGCTATTTGGAGGAACTTCAGAAGAAAATATCATAGATCAACATGTTCACATAAAGGAACTAATCTGTTAGATACCAGCTTTTATGAGGTTTCAGAGCCTTCTTCTGTGTACGGTCAAAGACAAATGACACATAAAAGAAAGAGTACAGGGAAGCAAAATGATATTTGGTCAATAACCTTGGTGCCATTGCAAGGTCTAGCACCAAGGAATTCATGGAAGTCTAGGCTGCTGGAGCTGATGTTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0006810 GO:0007049 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009301 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010014 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0010467 GO:0010817 GO:0016070 GO:0016073 GO:0018130 GO:0019438 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043696 GO:0043697 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060184 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071704 GO:0090304 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097659 GO:0098781 GO:0099402 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-SNAP50_C

Protein Analysis

170

Amino Acids

19.21

Weight (kDa)

5.94

Isoelectric Point (pI)

55.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006966)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0108841
rosa_laevigata	RLG00000020671
rosa_multiflora	Rmu_sc0003830.1_g000011
rosa_roxburghii	Rroxscaffold_1G00003190 Rroxscaffold_1G00015540
rosa_rugosa	Rorug02G0436900 Rorug05G0467200
rosa_samantha	Rh2AG206800 Rh2AG498900 Rh2AG499100 Rh2BG217900 Rh2CG209900 Rh2CG485500 Rh2DG213100 Rh5AG431500 Rh5AG521000 Rh5BG447600 Rh5BG543000 Rh5CG469600 Rh5CG565800 Rh5DG460200 Rh5DG552800 Rh6CG050900
rosa_wichuraiana	Rw5G040450 Rw5G048320 Rw6G002720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	3 cut(s)	161, 186, 265
AfaI	GTAC	2 cut(s)	374, 409
AfiI	CCNNNNNNNGG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	4 cut(s)	47, 93, 224, 233
AluBI	AGCT	5 cut(s)	82, 175, 266, 342, 499
AluI	AGCT	5 cut(s)	82, 175, 266, 342, 499
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	152, 237
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	490
ApoI	RAATTY	1 cut(s)	472
AspS9I	GGNCC	3 cut(s)	4, 102, 128
AsuHPI	GGTGA	4 cut(s)	35, 44, 80, 127
AvaII	GGWCC	2 cut(s)	102, 128
BanI	GGYRCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	84
BbsI	GAAGAC	2 cut(s)	54, 150
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	477
BcoDI	GTCTC	2 cut(s)	152, 237
BfaI	CTAG	2 cut(s)	461, 486
BisI	GCNGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	492
Bme18I	GGWCC	2 cut(s)	102, 128
BmgT120I	GGNCC	3 cut(s)	4, 102, 128
BmiI	GGNNCC	2 cut(s)	103, 447
BpiI	GAAGAC	2 cut(s)	54, 150
BplI	GAGNNNNNCTC	4 cut(s)	68, 100, 115, 147
BsaI	GGTCTC	2 cut(s)	152, 237
BsaJI	CCNNGG	2 cut(s)	441, 467
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	5 cut(s)	11, 41, 179, 209, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse1I	ACTGG	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	449
BseDI	CCNNGG	2 cut(s)	441, 467
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	1 cut(s)	449
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	4 cut(s)	5, 86, 89, 92
BseXI	GCAGC	1 cut(s)	477
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	2 cut(s)	152, 237
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	152, 237
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	299
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	103, 447
BspT107I	GGYRCC	1 cut(s)	445
BspTNI	GGTCTC	2 cut(s)	152, 237
BsrDI	GCAATG	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	441, 467
BssMI	GATC	1 cut(s)	299
BssT1I	CCWWGG	2 cut(s)	441, 467
Bst4CI	ACNGT	2 cut(s)	23, 377
Bst6I	CTCTTC	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	122
BstKTI	GATC	1 cut(s)	302
BstMAI	GTCTC	2 cut(s)	152, 237
BstMBI	GATC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstNSI	RCATGY	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	477
BstV2I	GAAGAC	2 cut(s)	54, 150
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	195
Cfr13I	GGNCC	3 cut(s)	4, 102, 128
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	373, 408
CviAII	CATG	3 cut(s)	306, 477, 510
CviQI	GTAC	2 cut(s)	373, 408
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	441, 467
Eco24I	GRGCYC	1 cut(s)	84
Eco31I	GGTCTC	2 cut(s)	152, 237
Eco47I	GGWCC	2 cut(s)	102, 128
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	3 cut(s)	161, 186, 265
EcoICRI	GAGCTC	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	472
EcoT14I	CCWWGG	2 cut(s)	441, 467
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	2 cut(s)	441, 467
FaeI	CATG	3 cut(s)	309, 480, 513
FaiI	YATR	8 cut(s)	42, 297, 307, 315, 348, 396, 478, 511
FatI	CATG	3 cut(s)	305, 476, 509
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	491
FspBI	CTAG	2 cut(s)	461, 486
GluI	GCNGC	1 cut(s)	491
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	309, 480, 513
HinfI	GANTC	2 cut(s)	26, 118
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	4 cut(s)	35, 44, 80, 127
Hpy166II	GTNNAC	3 cut(s)	109, 311, 373
Hpy188I	TCNGA	3 cut(s)	123, 284, 358
Hpy188III	TCNNGA	2 cut(s)	93, 179
Hpy8I	GTNNAC	3 cut(s)	109, 311, 373
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	2 cut(s)	23, 377
HpyCH4V	TGCA	1 cut(s)	454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	309, 480, 513
Kzo9I	GATC	1 cut(s)	299
LmnI	GCTCC	2 cut(s)	79, 496
LpnPI	CCDG	8 cut(s)	43, 164, 167, 189, 235, 352, 396, 479
Lsp1109I	GCAGC	1 cut(s)	477
MaeI	CTAG	2 cut(s)	461, 486
MaeIII	GTNAC	2 cut(s)	23, 32
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MboII	GAAGA	5 cut(s)	59, 142, 150, 297, 357
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	1 cut(s)	472
MlyI	GAGTC	2 cut(s)	20, 127
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	9 cut(s)	17, 26, 64, 67, 70, 89, 141, 267, 343
MspI	CCGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	496
NdeII	GATC	1 cut(s)	299
NlaIII	CATG	3 cut(s)	309, 480, 513
NlaIV	GGNNCC	2 cut(s)	103, 447
NmuCI	GTSAC	2 cut(s)	23, 32
NspI	RCATGY	1 cut(s)	309
PciI	ACATGT	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	492
PleI	GAGTC	2 cut(s)	20, 126
PpsI	GAGTC	2 cut(s)	20, 126
PscI	ACATGT	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	103, 447
PspPI	GGNCC	3 cut(s)	4, 102, 128
RsaI	GTAC	2 cut(s)	374, 409
RsaNI	GTAC	2 cut(s)	373, 408
SacI	GAGCTC	1 cut(s)	84
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	1 cut(s)	299
Sau96I	GGNCC	3 cut(s)	4, 102, 128
SchI	GAGTC	2 cut(s)	20, 127
SduI	GDGCHC	1 cut(s)	84
SinI	GGWCC	2 cut(s)	102, 128
Sse9I	AATT	1 cut(s)	472
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	2 cut(s)	461, 486
SstI	GAGCTC	1 cut(s)	84
StyI	CCWWGG	2 cut(s)	441, 467
TaaI	ACNGT	2 cut(s)	23, 377
TaqII	GACCGA	1 cut(s)	134
TasI	AATT	1 cut(s)	472
TatI	WGTACW	1 cut(s)	407
TseFI	GTSAC	2 cut(s)	23, 32
TseI	GCWGC	1 cut(s)	490
Tsp45I	GTSAC	2 cut(s)	23, 32
TspDTI	ATGAA	2 cut(s)	198, 465
TspGWI	ACGGA	1 cut(s)	94
VpaK11BI	GGWCC	2 cut(s)	102, 128
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	474
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	2 cut(s)	461, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.