RLG00000022730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0010631
Physical Location & Seq
Forward (+)
10761450 .. 10762337
888 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022730

Sequence Viewer

Length: 378 bp
ATGCTCCTGGTACGTGTTTTACCTACTGGCACACATGTTGTTCTGGGTGTTCCAGGTGTTGCAGGTGACATTCAGGTTGATGTTATTCCCTGTGTCACACCATCCCTTGCCCTTGACCTACCTCCACAAACTGGTGATGTCGGCTGCAATCCGCTGCCGGTTCCTGGAAATCTAGTATTTGCTCATCGCTCACAAGGTCGCTGGCAACTGCCCTCCACTTCTCCTCCAATCACTACCTCCCAATCTGCATCATCACCTCCCATGGGGCCCTCCTCAAGCAAATCTTTGGACAAGGGTAAACAAAAGATCTTTACTGATGTGGTTCCATCTTCTTCCTCTCCACCTCATCAGCCTCTCAGTGATGTGGCGGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

12.89

Weight (kDa)

6.22

Isoelectric Point (pI)

61.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 53
Acc36I ACCTGC 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 131
AciI CCGC 2 cut(s) 152, 368
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 3 cut(s) 131, 164, 263
AflIII ACRYGT 3 cut(s) 13, 34, 372
AjnI CCWGG 3 cut(s) 6, 52, 163
AoxI GGCC 1 cut(s) 266
ApaI GGGCCC 1 cut(s) 270
ApeKI GCWGC 2 cut(s) 144, 154
AspS9I GGNCC 2 cut(s) 266, 267
AsuHPI GGTGA 3 cut(s) 77, 146, 246
BaeGI GKGCMC 1 cut(s) 270
BanII GRGCYC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 131, 141
BccI CCATC 2 cut(s) 109, 334
BciT130I CCWGG 3 cut(s) 8, 54, 165
BfaI CTAG 1 cut(s) 173
BfuAI ACCTGC 1 cut(s) 53
BglII AGATCT 1 cut(s) 306
BisI GCNGC 2 cut(s) 145, 155
BlsI GCNGC 2 cut(s) 146, 156
Bme1390I CCNGG 3 cut(s) 8, 54, 165
BmgT120I GGNCC 2 cut(s) 266, 267
BmiI GGNNCC 4 cut(s) 162, 267, 268, 324
BmrFI CCNGG 3 cut(s) 8, 54, 165
BmsI GCATC 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 259
BsaAI YACGTR 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 164, 263
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 31, 136
BseBI CCWGG 3 cut(s) 8, 54, 165
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 101
BseLI CCNNNNNNNGG 3 cut(s) 131, 164, 263
BseMII CTCAG 1 cut(s) 370
BseNI ACTGG 2 cut(s) 31, 136
BseRI GAGGAG 2 cut(s) 213, 262
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 2 cut(s) 131, 141
BshFI GGCC 1 cut(s) 268
BsiSI CCGG 1 cut(s) 158
BslI CCNNNNNNNGG 3 cut(s) 131, 164, 263
BsnI GGCC 1 cut(s) 268
Bsp120I GGGCCC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 306
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 2 cut(s) 152, 368
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 369
BspLI GGNNCC 4 cut(s) 162, 267, 268, 324
BspMI ACCTGC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 2 cut(s) 31, 136
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 3 cut(s) 8, 54, 165
BstBAI YACGTR 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 356
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 101
BstKTI GATC 1 cut(s) 309
BstMBI GATC 1 cut(s) 306
BstNI CCWGG 3 cut(s) 8, 54, 165
BstNSI RCATGY 2 cut(s) 38, 376
BstSCI CCNGG 3 cut(s) 6, 52, 163
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 131, 141
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BsuRI GGCC 1 cut(s) 268
BtgI CCRYGG 1 cut(s) 261
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 364
BveI ACCTGC 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 266, 267
Csp6I GTAC 1 cut(s) 11
CviAII CATG 3 cut(s) 35, 262, 373
CviJI RGCY 3 cut(s) 144, 268, 352
CviKI_1 RGCY 3 cut(s) 144, 268, 352
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 356
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 270
EcoO109I RGGNCCY 2 cut(s) 266, 267
EcoRII CCWGG 3 cut(s) 6, 52, 163
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 3 cut(s) 38, 265, 376
FaiI YATR 3 cut(s) 36, 263, 374
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FatI CATG 3 cut(s) 34, 261, 372
Fnu4HI GCNGC 2 cut(s) 145, 155
FokI GGATG 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 2 cut(s) 145, 155
FspBI CTAG 1 cut(s) 173
GluI GCNGC 2 cut(s) 145, 155
HaeIII GGCC 1 cut(s) 268
HapII CCGG 1 cut(s) 158
Hin1II CATG 3 cut(s) 38, 265, 376
HpaII CCGG 1 cut(s) 158
HphI GGTGA 3 cut(s) 77, 146, 246
Hpy166II GTNNAC 1 cut(s) 299
Hpy8I GTNNAC 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 3 cut(s) 62, 147, 248
HpyF3I CTNAG 1 cut(s) 356
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 3 cut(s) 38, 265, 376
Kzo9I GATC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 2 cut(s) 131, 141
LweI GCATC 1 cut(s) 257
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 2 cut(s) 65, 94
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 2 cut(s) 321, 324
MflI RGATCY 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 3 cut(s) 8, 54, 165
MvaI CCWGG 3 cut(s) 8, 54, 165
NcoI CCATGG 1 cut(s) 261
NdeII GATC 1 cut(s) 306
NlaIII CATG 3 cut(s) 38, 265, 376
NlaIV GGNNCC 4 cut(s) 162, 267, 268, 324
NmuCI GTSAC 2 cut(s) 65, 94
NspI RCATGY 2 cut(s) 38, 376
PaqCI CACCTGC 1 cut(s) 53
PciI ACATGT 2 cut(s) 34, 372
PflMI CCANNNNNTGG 1 cut(s) 131
PfoI TCCNGGA 1 cut(s) 163
PkrI GCNGC 2 cut(s) 146, 156
Ppu21I YACGTR 1 cut(s) 14
PscI ACATGT 2 cut(s) 34, 372
Psp6I CCWGG 3 cut(s) 6, 52, 163
PspGI CCWGG 3 cut(s) 6, 52, 163
PspN4I GGNNCC 4 cut(s) 162, 267, 268, 324
PspOMI GGGCCC 1 cut(s) 266
PspPI GGNCC 2 cut(s) 266, 267
PsuI RGATCY 1 cut(s) 306
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SatI GCNGC 2 cut(s) 145, 155
Sau3AI GATC 1 cut(s) 306
Sau96I GGNCC 2 cut(s) 266, 267
ScrFI CCNGG 3 cut(s) 8, 54, 165
SduI GDGCHC 1 cut(s) 270
SfaNI GCATC 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SsiI CCGC 2 cut(s) 152, 368
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 3 cut(s) 6, 52, 163
StyI CCWWGG 1 cut(s) 261
TaiI ACGT 1 cut(s) 16
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 2 cut(s) 65, 94
TseI GCWGC 2 cut(s) 144, 154
Tsp45I GTSAC 2 cut(s) 65, 94
TspRI CASTG 1 cut(s) 364
Van91I CCANNNNNTGG 1 cut(s) 131
XceI RCATGY 2 cut(s) 38, 376
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.