Rh3CG305000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0010631
Physical Location & Seq
Reverse (-)
31795151 .. 31795786
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG305000.1

Sequence Viewer

Length: 636 bp
ATGTGTTTCCGCTGTGGTCGTCTTGGCCATATGCTTTCACGGTGCCAGATGTCTCGTCATTCGTCTACCTACCACCTTGGGCCATGGTTAGCAGTCTCTTCTCTCCGCCGACCTCTCCATGATCCAGATCATGGACTGGATATTGGTAATCCTCGTGATATTGCATTACACAGGCCCTTGCCGGTCCCTAATCCTGCTCTTGGTCTGCCAAATGGAAGGAACTTGGTTGTTCTTGCTCATGATCAAGTACATGTTATACATCCTGGTACACATGTTGTTTTGGGTGTTCCGGTAGTTGCAGGTGACATTCAGGTCGATGTTATTCCCTGTGTCACGCAGTCCCCTGCCCTTGATCTACCTCCACGTACTGGTGATGTTGGCTGGAATCCTCTGCCGGTTCCCGAAACCCTAGTTTTGGCTCATCGCTCACAAGGTCGCTGGCAGCCGCCATCTTCGTCTCCTCCAATCACCATCTCCCAATCTGTCTCGTCACCTCCCATGGGGCCCTCCTCAAGCCAATCTTTAGACAATGGTAAACAAAAGATCTTTGCTGATGTGGTTCCATCTTCATCCTCTCCACCACATCAGCCTCTCAGTGACGTGGCGGACATGCAGTTAGCCTTATCACTCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

22.63

Weight (kDa)

7.21

Isoelectric Point (pI)

66.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 290
AasI GACNNNNNNGTC 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 42
AccB7I CCANNNNNTGG 2 cut(s) 131, 368
AccI GTMKAC 1 cut(s) 65
AciI CCGC 4 cut(s) 10, 106, 446, 605
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 25
AfaI GTAC 3 cut(s) 249, 268, 367
AfiI CCNNNNNNNGG 5 cut(s) 131, 200, 368, 415, 500
AflIII ACRYGT 2 cut(s) 250, 271
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 1 cut(s) 262
Alw26I GTCTC 4 cut(s) 57, 100, 462, 490
AlwI GGATC 1 cut(s) 116
AoxI GGCC 4 cut(s) 25, 80, 173, 503
ApaI GGGCCC 1 cut(s) 507
ApeKI GCWGC 1 cut(s) 442
AspS9I GGNCC 5 cut(s) 80, 174, 184, 503, 504
AsuHPI GGTGA 4 cut(s) 314, 383, 460, 483
AvaII GGWCC 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 507
BaeI ACNNNNGTAYC 2 cut(s) 258, 291
BalI TGGCCA 1 cut(s) 27
BanI GGYRCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 507
BauI CACGAG 1 cut(s) 153
BbvI GCAGC 1 cut(s) 454
BccI CCATC 3 cut(s) 457, 479, 571
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 1 cut(s) 241
BcoDI GTCTC 4 cut(s) 57, 100, 462, 490
BfaI CTAG 2 cut(s) 410, 634
BfuAI ACCTGC 1 cut(s) 290
BglII AGATCT 1 cut(s) 543
BisI GCNGC 2 cut(s) 443, 446
BlsI GCNGC 2 cut(s) 444, 447
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 184
BmgBI CACGTC 1 cut(s) 601
BmgT120I GGNCC 5 cut(s) 80, 174, 184, 503, 504
BmiI GGNNCC 6 cut(s) 44, 186, 399, 504, 505, 561
BmrFI CCNGG 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 496
BsaAI YACGTR 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 3 cut(s) 76, 83, 498
BsaWI WCCGGW 1 cut(s) 289
Bsc4I CCNNNNNNNGG 5 cut(s) 131, 200, 368, 415, 500
Bse118I RCCGGY 2 cut(s) 181, 394
Bse1I ACTGG 2 cut(s) 141, 373
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 3 cut(s) 76, 83, 498
BseGI GGATG 2 cut(s) 259, 569
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 5 cut(s) 131, 200, 368, 415, 500
BseMII CTCAG 1 cut(s) 607
BseNI ACTGG 2 cut(s) 141, 373
BseRI GAGGAG 2 cut(s) 450, 499
BseSI GKGCMC 1 cut(s) 507
BseXI GCAGC 1 cut(s) 454
BshFI GGCC 4 cut(s) 27, 82, 175, 505
BshNI GGYRCC 1 cut(s) 42
BsiSI CCGG 3 cut(s) 182, 290, 395
BslFI GGGAC 2 cut(s) 170, 325
BslI CCNNNNNNNGG 5 cut(s) 131, 200, 368, 415, 500
BsmAI GTCTC 4 cut(s) 57, 100, 462, 490
BsmBI CGTCTC 1 cut(s) 462
BsmFI GGGAC 2 cut(s) 170, 325
BsnI GGCC 4 cut(s) 27, 82, 175, 505
Bsp120I GGGCCC 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 5 cut(s) 121, 127, 241, 352, 543
Bsp19I CCATGG 2 cut(s) 83, 498
BspACI CCGC 4 cut(s) 10, 106, 446, 605
BspANI GGCC 4 cut(s) 27, 82, 175, 505
BspCNI CTCAG 1 cut(s) 606
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 6 cut(s) 44, 186, 399, 504, 505, 561
BspMI ACCTGC 1 cut(s) 290
BspPI GGATC 1 cut(s) 116
BspT107I GGYRCC 1 cut(s) 42
BsrFI RCCGGY 2 cut(s) 181, 394
BsrI ACTGG 2 cut(s) 141, 373
BssAI RCCGGY 2 cut(s) 181, 394
BssECI CCNNGG 3 cut(s) 76, 83, 498
BssMI GATC 5 cut(s) 121, 127, 241, 352, 543
BssSI CACGAG 1 cut(s) 153
BssT1I CCWWGG 3 cut(s) 76, 83, 498
Bst2BI CACGAG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 103
BstBAI YACGTR 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 440
BstDEI CTNAG 1 cut(s) 593
BstDSI CCRYGG 2 cut(s) 83, 498
BstF5I GGATG 2 cut(s) 259, 569
BstKTI GATC 5 cut(s) 124, 130, 244, 355, 546
BstMAI GTCTC 4 cut(s) 57, 100, 462, 490
BstMBI GATC 5 cut(s) 121, 127, 241, 352, 543
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 3 cut(s) 254, 275, 613
BstSCI CCNGG 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 507
BstV1I GCAGC 1 cut(s) 454
BstX2I RGATCY 1 cut(s) 543
BstYI RGATCY 1 cut(s) 543
BsuRI GGCC 4 cut(s) 27, 82, 175, 505
BtgI CCRYGG 2 cut(s) 83, 498
BtgZI GCGATG 1 cut(s) 407
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 2 cut(s) 259, 569
BtsIMutI CAGTG 1 cut(s) 601
BveI ACCTGC 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 440
CciI TCATGA 1 cut(s) 238
Cfr10I RCCGGY 2 cut(s) 181, 394
Cfr13I GGNCC 5 cut(s) 80, 174, 184, 503, 504
Csp6I GTAC 3 cut(s) 248, 267, 366
CviAII CATG 8 cut(s) 84, 119, 131, 239, 251, 272, 499, 610
CviQI GTAC 3 cut(s) 248, 267, 366
DdeI CTNAG 1 cut(s) 593
DpnI GATC 5 cut(s) 123, 129, 243, 354, 545
DpnII GATC 5 cut(s) 121, 127, 241, 352, 543
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
EciI GGCGGA 2 cut(s) 95, 620
Eco130I CCWWGG 3 cut(s) 76, 83, 498
Eco24I GRGCYC 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 184
EcoO109I RGGNCCY 3 cut(s) 174, 503, 504
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 3 cut(s) 76, 83, 498
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 3 cut(s) 76, 83, 498
Esp3I CGTCTC 1 cut(s) 462
FaeI CATG 8 cut(s) 87, 122, 134, 242, 254, 275, 502, 613
FalI AAGNNNNNCTT 2 cut(s) 505, 537
FaqI GGGAC 2 cut(s) 170, 325
FatI CATG 8 cut(s) 83, 118, 130, 238, 250, 271, 498, 609
FauNDI CATATG 1 cut(s) 30
FbaI TGATCA 1 cut(s) 241
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 2 cut(s) 443, 446
FokI GGATG 2 cut(s) 246, 556
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 2 cut(s) 443, 446
FspBI CTAG 2 cut(s) 410, 634
GluI GCNGC 2 cut(s) 443, 446
HaeIII GGCC 4 cut(s) 27, 82, 175, 505
HapII CCGG 3 cut(s) 182, 290, 395
Hin1II CATG 8 cut(s) 87, 122, 134, 242, 254, 275, 502, 613
HinfI GANTC 1 cut(s) 385
HpaII CCGG 3 cut(s) 182, 290, 395
HphI GGTGA 4 cut(s) 314, 383, 460, 483
Hpy166II GTNNAC 3 cut(s) 66, 269, 536
Hpy188III TCNNGA 4 cut(s) 125, 155, 239, 401
Hpy8I GTNNAC 3 cut(s) 66, 269, 536
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 2 cut(s) 364, 600
HpyCH4V TGCA 3 cut(s) 164, 299, 613
HpyF3I CTNAG 1 cut(s) 593
HpySE526I ACGT 2 cut(s) 364, 600
Hsp92II CATG 8 cut(s) 87, 122, 134, 242, 254, 275, 502, 613
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 5 cut(s) 121, 127, 241, 352, 543
Lsp1109I GCAGC 1 cut(s) 454
MaeI CTAG 2 cut(s) 410, 634
MaeII ACGT 2 cut(s) 364, 600
MaeIII GTNAC 4 cut(s) 302, 331, 489, 596
MalI GATC 5 cut(s) 123, 129, 243, 354, 545
MboI GATC 5 cut(s) 121, 127, 241, 352, 543
MboII GAAGA 3 cut(s) 90, 444, 558
MflI RGATCY 1 cut(s) 543
MhlI GDGCHC 1 cut(s) 507
MlsI TGGCCA 1 cut(s) 27
MluNI TGGCCA 1 cut(s) 27
Mox20I TGGCCA 1 cut(s) 27
MscI TGGCCA 1 cut(s) 27
Msp20I TGGCCA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 3 cut(s) 182, 290, 395
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
NcoI CCATGG 2 cut(s) 83, 498
NdeI CATATG 1 cut(s) 30
NdeII GATC 5 cut(s) 121, 127, 241, 352, 543
NlaIII CATG 8 cut(s) 87, 122, 134, 242, 254, 275, 502, 613
NlaIV GGNNCC 6 cut(s) 44, 186, 399, 504, 505, 561
NmuCI GTSAC 4 cut(s) 302, 331, 489, 596
NspI RCATGY 3 cut(s) 254, 275, 613
PagI TCATGA 1 cut(s) 238
PaqCI CACCTGC 1 cut(s) 290
PciI ACATGT 2 cut(s) 250, 271
PfeI GAWTC 1 cut(s) 385
PflMI CCANNNNNTGG 2 cut(s) 131, 368
PkrI GCNGC 2 cut(s) 444, 447
Ppu21I YACGTR 1 cut(s) 365
PscI ACATGT 2 cut(s) 250, 271
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 6 cut(s) 44, 186, 399, 504, 505, 561
PspOMI GGGCCC 1 cut(s) 503
PspPI GGNCC 5 cut(s) 80, 174, 184, 503, 504
PsuI RGATCY 1 cut(s) 543
RsaI GTAC 3 cut(s) 249, 268, 367
RsaNI GTAC 3 cut(s) 248, 267, 366
SatI GCNGC 2 cut(s) 443, 446
Sau3AI GATC 5 cut(s) 121, 127, 241, 352, 543
Sau96I GGNCC 5 cut(s) 80, 174, 184, 503, 504
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 507
SinI GGWCC 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
SsiI CCGC 4 cut(s) 10, 106, 446, 605
SspMI CTAG 2 cut(s) 410, 634
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 3 cut(s) 76, 83, 498
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 2 cut(s) 367, 603
TaqI TCGA 1 cut(s) 315
TatI WGTACW 1 cut(s) 247
TauI GCSGC 1 cut(s) 448
TfiI GAWTC 1 cut(s) 385
TscAI CASTG 1 cut(s) 601
TseFI GTSAC 4 cut(s) 302, 331, 489, 596
TseI GCWGC 1 cut(s) 442
Tsp45I GTSAC 4 cut(s) 302, 331, 489, 596
TspDTI ATGAA 1 cut(s) 558
TspRI CASTG 1 cut(s) 601
Van91I CCANNNNNTGG 2 cut(s) 131, 368
VpaK11BI GGWCC 1 cut(s) 184
XceI RCATGY 3 cut(s) 254, 275, 613
XmiI GTMKAC 1 cut(s) 65
XspI CTAG 2 cut(s) 410, 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.