Rh6AG253200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010631
Physical Location & Seq
Reverse (-)
44293027 .. 44293973
947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG253200.1

Sequence Viewer

Length: 660 bp
ATGGGGCCCTCCTCAAGTAAATCTTTGGACAAGGGTAAACAAAAGATCTTTGTTGATGTGGTTCCATCTTCTTCCTCTCCACCTCATCAGCCTCTCAGTGATGTGGCGGACATGCAGTTAGCCTTATCACTCTACTTAGCCGATTTAGTTGAGTCCACTACTATGTTGACAGATCCAGCTGATGCCCAAGCCCATTTGATGCAAGTTGATCCTGTTTGTGAACCAGCCCTCCTTCAAGTCTTGTTGGCCCATCAGGAAGCTGTTTTGGACCCTACTCTCCTCGGCCCCAACCCGGACATGTCAATGTTTGATAATTCACCAGATCCATCTTCCCATTCACTCCATTTTCAAGCACATACTCCATCCCCTACCCTTCCTCCCTTCTCTTCATATCAAGCTCCGACTACTTTGGTTTCCACTTATGCTTCTCCATCATCAATTCTCCGGTCGGATTTAGATGCGGCCTCTCTTCTCCTTTGGTCTAGCACTGTCGTAGTCACTCAGGATGATTATGCGGTTCCTCTTCCCCCCTTTGAGTACACTCTTCTGTCACTTCCTGCTTCTGGAACTCCATCTCCAGATGTCTCTCCATCCTTTGATGACCTTGCTCAGGCAGGTGGCATTGGTAGCTGGCCAGATGCAGCTATGGGTGTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

23.08

Weight (kDa)

4.07

Isoelectric Point (pI)

56.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 605
Acc36I ACCTGC 1 cut(s) 605
AciI CCGC 3 cut(s) 107, 461, 515
AclWI GGATC 3 cut(s) 167, 203, 317
AcoI YGGCCR 1 cut(s) 632
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 3 cut(s) 292, 563, 610
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 2 cut(s) 236, 350
AloI GAACNNNNNNTCC 4 cut(s) 213, 245, 559, 591
AluBI AGCT 5 cut(s) 179, 260, 398, 630, 644
AluI AGCT 5 cut(s) 179, 260, 398, 630, 644
Alw26I GTCTC 1 cut(s) 589
AlwI GGATC 3 cut(s) 167, 203, 317
AoxI GGCC 5 cut(s) 5, 246, 283, 462, 632
ApaI GGGCCC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 641
AspS9I GGNCC 5 cut(s) 5, 6, 247, 268, 284
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 309
AvaII GGWCC 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 9
BalI TGGCCA 1 cut(s) 634
BanII GRGCYC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 653
BccI CCATC 7 cut(s) 73, 258, 334, 370, 439, 580, 598
BcnI CCSGG 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 589
BfaI CTAG 1 cut(s) 483
BfuAI ACCTGC 1 cut(s) 605
BglII AGATCT 1 cut(s) 45
BisI GCNGC 2 cut(s) 462, 642
BlsI GCNGC 2 cut(s) 463, 643
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 5 cut(s) 5, 6, 247, 268, 284
BmiI GGNNCC 6 cut(s) 6, 7, 63, 270, 286, 519
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 4 cut(s) 172, 189, 448, 628
BpmI CTGGAG 1 cut(s) 561
Bpu10I CCTNAGC 1 cut(s) 609
BpuMI CCSGG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 280
BsaWI WCCGGW 1 cut(s) 444
BsaXI ACNNNNNCTCC 6 cut(s) 213, 243, 361, 391, 559, 589
Bsc4I CCNNNNNNNGG 3 cut(s) 292, 563, 610
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 3 cut(s) 362, 511, 590
BseLI CCNNNNNNNGG 3 cut(s) 292, 563, 610
BseMII CTCAG 3 cut(s) 109, 515, 623
BseRI GAGGAG 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 1 cut(s) 653
Bsh1285I CGRYCG 1 cut(s) 449
BshFI GGCC 5 cut(s) 7, 248, 285, 464, 634
BsiEI CGRYCG 1 cut(s) 449
BsiSI CCGG 2 cut(s) 293, 445
BslI CCNNNNNNNGG 3 cut(s) 292, 563, 610
BsmAI GTCTC 1 cut(s) 589
BsnI GGCC 5 cut(s) 7, 248, 285, 464, 634
Bsp120I GGGCCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 4 cut(s) 45, 172, 208, 322
BspACI CCGC 3 cut(s) 107, 461, 515
BspANI GGCC 5 cut(s) 7, 248, 285, 464, 634
BspCNI CTCAG 3 cut(s) 108, 514, 622
BspLI GGNNCC 6 cut(s) 6, 7, 63, 270, 286, 519
BspMI ACCTGC 1 cut(s) 605
BspPI GGATC 3 cut(s) 167, 203, 317
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 4 cut(s) 45, 172, 208, 322
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 4 cut(s) 391, 474, 528, 549
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 4 cut(s) 95, 136, 501, 609
BstENI CCTNNNNNAGG 1 cut(s) 608
BstF5I GGATG 3 cut(s) 362, 511, 590
BstKTI GATC 4 cut(s) 48, 175, 211, 325
BstMAI GTCTC 1 cut(s) 589
BstMBI GATC 4 cut(s) 45, 172, 208, 322
BstMCI CGRYCG 1 cut(s) 449
BstMWI GCNNNNNNNGC 1 cut(s) 627
BstNSI RCATGY 2 cut(s) 115, 301
BstSCI CCNGG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 653
BstX2I RGATCY 3 cut(s) 45, 172, 322
BstYI RGATCY 3 cut(s) 45, 172, 322
BsuRI GGCC 5 cut(s) 7, 248, 285, 464, 634
BtsCI GGATG 3 cut(s) 362, 511, 590
BtsIMutI CAGTG 2 cut(s) 103, 486
BveI ACCTGC 1 cut(s) 605
Cac8I GCNNGC 1 cut(s) 632
Cfr13I GGNCC 5 cut(s) 5, 6, 247, 268, 284
Csp6I GTAC 1 cut(s) 538
CviAII CATG 2 cut(s) 112, 298
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 4 cut(s) 95, 136, 501, 609
DpnI GATC 4 cut(s) 47, 174, 210, 324
DpnII GATC 4 cut(s) 45, 172, 208, 322
EaeI YGGCCR 1 cut(s) 632
Eam1104I CTCTTC 4 cut(s) 391, 474, 528, 549
EarI CTCTTC 4 cut(s) 391, 474, 528, 549
EciI GGCGGA 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 268
EcoNI CCTNNNNNAGG 1 cut(s) 608
EcoO109I RGGNCCY 2 cut(s) 5, 6
EcoT38I GRGCYC 1 cut(s) 9
FaeI CATG 2 cut(s) 115, 301
FaiI YATR 8 cut(s) 113, 164, 299, 357, 391, 423, 513, 647
FalI AAGNNNNNCTT 2 cut(s) 7, 39
FatI CATG 2 cut(s) 111, 297
Fnu4HI GCNGC 2 cut(s) 462, 642
FokI GGATG 3 cut(s) 349, 518, 577
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 2 cut(s) 462, 642
FspBI CTAG 1 cut(s) 483
GluI GCNGC 2 cut(s) 462, 642
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 5 cut(s) 7, 248, 285, 464, 634
HapII CCGG 2 cut(s) 293, 445
Hin1II CATG 2 cut(s) 115, 301
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 1 cut(s) 152
HpaII CCGG 2 cut(s) 293, 445
HphI GGTGA 1 cut(s) 309
Hpy166II GTNNAC 5 cut(s) 38, 156, 168, 221, 540
Hpy188I TCNGA 2 cut(s) 402, 451
Hpy188III TCNNGA 4 cut(s) 254, 503, 564, 578
Hpy8I GTNNAC 5 cut(s) 38, 156, 168, 221, 540
HpyAV CCTTC 3 cut(s) 242, 383, 391
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4V TGCA 3 cut(s) 115, 202, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 627
HpyF3I CTNAG 4 cut(s) 95, 136, 501, 609
Hsp92II CATG 2 cut(s) 115, 301
Kzo9I GATC 4 cut(s) 45, 172, 208, 322
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 1 cut(s) 653
LweI GCATC 4 cut(s) 172, 189, 448, 628
MaeI CTAG 1 cut(s) 483
MaeIII GTNAC 2 cut(s) 496, 549
MalI GATC 4 cut(s) 47, 174, 210, 324
MboI GATC 4 cut(s) 45, 172, 208, 322
MboII GAAGA 7 cut(s) 60, 63, 321, 378, 461, 515, 536
MflI RGATCY 3 cut(s) 45, 172, 322
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 634
MluCI AATT 2 cut(s) 313, 438
MluNI TGGCCA 1 cut(s) 634
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 2 cut(s) 425, 429
Mox20I TGGCCA 1 cut(s) 634
MscI TGGCCA 1 cut(s) 634
MslI CAYNNNNRTG 2 cut(s) 161, 302
Msp20I TGGCCA 1 cut(s) 634
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 2 cut(s) 293, 445
MspR9I CCNGG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 627
NciI CCSGG 1 cut(s) 293
NdeII GATC 4 cut(s) 45, 172, 208, 322
NlaIII CATG 2 cut(s) 115, 301
NlaIV GGNNCC 6 cut(s) 6, 7, 63, 270, 286, 519
NmeAIII GCCGAG 1 cut(s) 261
NmuCI GTSAC 2 cut(s) 496, 549
NspI RCATGY 2 cut(s) 115, 301
PaqCI CACCTGC 1 cut(s) 605
PciI ACATGT 1 cut(s) 297
PkrI GCNGC 2 cut(s) 463, 643
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PscI ACATGT 1 cut(s) 297
PspN4I GGNNCC 6 cut(s) 6, 7, 63, 270, 286, 519
PspOMI GGGCCC 1 cut(s) 5
PspPI GGNCC 5 cut(s) 5, 6, 247, 268, 284
PsuI RGATCY 3 cut(s) 45, 172, 322
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
RseI CAYNNNNRTG 2 cut(s) 161, 302
SatI GCNGC 2 cut(s) 462, 642
Sau3AI GATC 4 cut(s) 45, 172, 208, 322
Sau96I GGNCC 5 cut(s) 5, 6, 247, 268, 284
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 9
SetI ASST 8 cut(s) 85, 181, 262, 400, 606, 619, 632, 646
SfaNI GCATC 4 cut(s) 172, 189, 448, 628
SinI GGWCC 1 cut(s) 268
SmiMI CAYNNNNRTG 2 cut(s) 161, 302
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 2 cut(s) 313, 438
SsiI CCGC 3 cut(s) 107, 461, 515
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 490
TasI AATT 2 cut(s) 313, 438
TatI WGTACW 1 cut(s) 537
TauI GCSGC 1 cut(s) 464
TscAI CASTG 2 cut(s) 103, 493
TseFI GTSAC 2 cut(s) 496, 549
TseI GCWGC 1 cut(s) 641
Tsp45I GTSAC 2 cut(s) 496, 549
TspDTI ATGAA 1 cut(s) 378
TspRI CASTG 2 cut(s) 103, 493
VpaK11BI GGWCC 1 cut(s) 268
XagI CCTNNNNNAGG 1 cut(s) 608
XceI RCATGY 2 cut(s) 115, 301
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.