Domain of unknown function (DUF4283)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000022730 |
| rosa_samantha | Rh1BG146400 Rh1DG178500 Rh2BG459300 Rh3CG304900 Rh3CG305000 Rh3DG300900 Rh3DG301000 Rh5DG566800 Rh6AG253200 Rh6AG253300 Rh6BG256200 Rh6BG256300 Rh6CG305700 Rh6CG305900 Rh6CG312300 Rh6CG312500 Rh6DG295800 Rh7CG434400 |
| rosa_wichuraiana | Rw0G013180 Rw3G024120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1034 |
| Acc36I | ACCTGC | 1 cut(s) | 1402 |
| Acc65I | GGTACC | 2 cut(s) | 212, 970 |
| AccB1I | GGYRCC | 2 cut(s) | 212, 970 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 854, 1091 |
| AccI | GTMKAC | 1 cut(s) | 1038 |
| AccII | CGCG | 2 cut(s) | 16, 390 |
| AccIII | TCCGGA | 1 cut(s) | 1501 |
| AclWI | GGATC | 6 cut(s) | 27, 572, 839, 1412, 1526, 1698 |
| AcoI | YGGCCR | 2 cut(s) | 748, 1359 |
| AfaI | GTAC | 6 cut(s) | 77, 214, 672, 972, 991, 1735 |
| AflIII | ACRYGT | 3 cut(s) | 14, 994, 1506 |
| AgsI | TTSAA | 5 cut(s) | 386, 626, 1445, 1559, 1762 |
| AjiI | CACGTC | 2 cut(s) | 1212, 1324 |
| AjnI | CCWGG | 7 cut(s) | 287, 395, 596, 652, 673, 806, 922 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1422, 1454 |
| AluBI | AGCT | 7 cut(s) | 169, 220, 379, 417, 1016, 1469, 1607 |
| AluI | AGCT | 7 cut(s) | 169, 220, 379, 417, 1016, 1469, 1607 |
| Alw21I | GWGCWC | 2 cut(s) | 171, 643 |
| Alw26I | GTCTC | 2 cut(s) | 506, 1627 |
| AlwI | GGATC | 6 cut(s) | 27, 572, 839, 1412, 1526, 1698 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 197 |
| Ama87I | CYCGRG | 2 cut(s) | 522, 1490 |
| Aor13HI | TCCGGA | 1 cut(s) | 1501 |
| ApaI | GGGCCC | 3 cut(s) | 807, 1230, 1497 |
| ApeKI | GCWGC | 8 cut(s) | 293, 350, 362, 365, 368, 1104, 1114, 1165 |
| Asp718I | GGTACC | 2 cut(s) | 212, 970 |
| AspLEI | GCGC | 1 cut(s) | 362 |
| AsuC2I | CCSGG | 3 cut(s) | 860, 1125, 1701 |
| AsuHPI | GGTGA | 5 cut(s) | 277, 1037, 1106, 1206, 1745 |
| AvaI | CYCGRG | 2 cut(s) | 522, 1490 |
| AvaII | GGWCC | 5 cut(s) | 392, 487, 586, 682, 817 |
| AxyI | CCTNAGG | 1 cut(s) | 582 |
| BaeGI | GKGCMC | 3 cut(s) | 807, 1230, 1497 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 981, 1014 |
| BalI | TGGCCA | 1 cut(s) | 750 |
| BanI | GGYRCC | 2 cut(s) | 212, 970 |
| BanII | GRGCYC | 4 cut(s) | 171, 807, 1230, 1497 |
| BauI | CACGAG | 3 cut(s) | 636, 876, 1694 |
| BbsI | GAAGAC | 1 cut(s) | 331 |
| Bbv12I | GWGCWC | 2 cut(s) | 171, 643 |
| BbvI | GCAGC | 8 cut(s) | 280, 337, 349, 352, 355, 1091, 1101, 1177 |
| BccI | CCATC | 7 cut(s) | 203, 400, 435, 1294, 1543, 1579, 1648 |
| BceAI | ACGGC | 1 cut(s) | 288 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 305, 339 |
| BciT130I | CCWGG | 7 cut(s) | 289, 397, 598, 654, 675, 808, 924 |
| BciVI | GTATCC | 1 cut(s) | 284 |
| BclI | TGATCA | 1 cut(s) | 964 |
| BcnI | CCSGG | 3 cut(s) | 860, 1125, 1701 |
| BcoDI | GTCTC | 2 cut(s) | 506, 1627 |
| BfaI | CTAG | 1 cut(s) | 1133 |
| BfuAI | ACCTGC | 1 cut(s) | 1402 |
| BfuI | GTATCC | 1 cut(s) | 284 |
| BglII | AGATCT | 1 cut(s) | 1266 |
| Bme18I | GGWCC | 5 cut(s) | 392, 487, 586, 682, 817 |
| BmeT110I | CYCGRG | 2 cut(s) | 522, 1490 |
| BmgBI | CACGTC | 2 cut(s) | 1212, 1324 |
| BmsI | GCATC | 4 cut(s) | 109, 762, 1398, 1699 |
| BoxI | GACNNNNGTC | 1 cut(s) | 397 |
| BpiI | GAAGAC | 1 cut(s) | 331 |
| BpmI | CTGGAG | 1 cut(s) | 636 |
| BpuEI | CTTGAG | 3 cut(s) | 587, 1137, 1219 |
| BpuMI | CCSGG | 3 cut(s) | 860, 1125, 1701 |
| BsaBI | GATNNNNATC | 1 cut(s) | 272 |
| BsaI | GGTCTC | 2 cut(s) | 506, 1627 |
| BsaJI | CCNNGG | 7 cut(s) | 288, 395, 431, 496, 799, 806, 853 |
| BsaWI | WCCGGW | 3 cut(s) | 1033, 1420, 1501 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1201, 1231, 1422, 1452, 1570, 1600 |
| Bse118I | RCCGGY | 3 cut(s) | 831, 904, 1117 |
| Bse1I | ACTGG | 3 cut(s) | 633, 991, 1096 |
| Bse21I | CCTNAGG | 1 cut(s) | 582 |
| Bse8I | GATNNNNATC | 1 cut(s) | 272 |
| BseAI | TCCGGA | 1 cut(s) | 1501 |
| BseBI | CCWGG | 7 cut(s) | 289, 397, 598, 654, 675, 808, 924 |
| BseDI | CCNNGG | 7 cut(s) | 288, 395, 431, 496, 799, 806, 853 |
| BseGI | GGATG | 8 cut(s) | 157, 427, 459, 580, 781, 871, 1292, 1571 |
| BseJI | GATNNNNATC | 1 cut(s) | 272 |
| BseMII | CTCAG | 1 cut(s) | 596 |
| BseNI | ACTGG | 3 cut(s) | 633, 991, 1096 |
| BseRI | GAGGAG | 2 cut(s) | 1173, 1222 |
| BseSI | GKGCMC | 3 cut(s) | 807, 1230, 1497 |
| BseXI | GCAGC | 8 cut(s) | 280, 337, 349, 352, 355, 1091, 1101, 1177 |
| BseYI | CCCAGC | 1 cut(s) | 216 |
| BsgI | GTGCAG | 1 cut(s) | 774 |
| Bsh1236I | CGCG | 2 cut(s) | 16, 390 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1038 |
| BshNI | GGYRCC | 2 cut(s) | 212, 970 |
| BsiEI | CGRYCG | 1 cut(s) | 1038 |
| BsiHKAI | GWGCWC | 2 cut(s) | 171, 643 |
| BsiHKCI | CYCGRG | 2 cut(s) | 522, 1490 |
| BslFI | GGGAC | 7 cut(s) | 572, 695, 803, 882, 1040, 1048, 1535 |
| BsmAI | GTCTC | 2 cut(s) | 506, 1627 |
| BsmFI | GGGAC | 7 cut(s) | 572, 695, 803, 882, 1040, 1048, 1535 |
| Bso31I | GGTCTC | 2 cut(s) | 506, 1627 |
| BsoBI | CYCGRG | 2 cut(s) | 522, 1490 |
| Bsp120I | GGGCCC | 3 cut(s) | 803, 1226, 1493 |
| Bsp1286I | GDGCHC | 5 cut(s) | 171, 643, 807, 1230, 1497 |
| Bsp13I | TCCGGA | 1 cut(s) | 1501 |
| Bsp19I | CCATGG | 2 cut(s) | 496, 853 |
| BspCNI | CTCAG | 1 cut(s) | 595 |
| BspEI | TCCGGA | 1 cut(s) | 1501 |
| BspFNI | CGCG | 2 cut(s) | 16, 390 |
| BspHI | TCATGA | 1 cut(s) | 961 |
| BspMI | ACCTGC | 1 cut(s) | 1402 |
| BspPI | GGATC | 6 cut(s) | 27, 572, 839, 1412, 1526, 1698 |
| BspT107I | GGYRCC | 2 cut(s) | 212, 970 |
| BspTNI | GGTCTC | 2 cut(s) | 506, 1627 |
| BsrFI | RCCGGY | 3 cut(s) | 831, 904, 1117 |
| BsrI | ACTGG | 3 cut(s) | 633, 991, 1096 |
| BssAI | RCCGGY | 3 cut(s) | 831, 904, 1117 |
| BssECI | CCNNGG | 7 cut(s) | 288, 395, 431, 496, 799, 806, 853 |
| BssSI | CACGAG | 3 cut(s) | 636, 876, 1694 |
| BssT1I | CCWWGG | 4 cut(s) | 431, 496, 799, 853 |
| Bst2BI | CACGAG | 3 cut(s) | 636, 876, 1694 |
| Bst2UI | CCWGG | 7 cut(s) | 289, 397, 598, 654, 675, 808, 924 |
| Bst4CI | ACNGT | 3 cut(s) | 265, 446, 765 |
| Bst6I | CTCTTC | 1 cut(s) | 1725 |
| BstC8I | GCNNGC | 5 cut(s) | 23, 63, 833, 906, 1163 |
| BstDEI | CTNAG | 1 cut(s) | 582 |
| BstDSI | CCRYGG | 2 cut(s) | 496, 853 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 281 |
| BstF5I | GGATG | 8 cut(s) | 157, 427, 459, 580, 781, 871, 1292, 1571 |
| BstFNI | CGCG | 2 cut(s) | 16, 390 |
| BstHHI | GCGC | 1 cut(s) | 362 |
| BstMAI | GTCTC | 2 cut(s) | 506, 1627 |
| BstMCI | CGRYCG | 1 cut(s) | 1038 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 22, 293, 359, 368, 711, 1397, 1748 |
| BstNI | CCWGG | 7 cut(s) | 289, 397, 598, 654, 675, 808, 924 |
| BstNSI | RCATGY | 5 cut(s) | 25, 65, 998, 1336, 1510 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 397 |
| BstSLI | GKGCMC | 3 cut(s) | 807, 1230, 1497 |
| BstUI | CGCG | 2 cut(s) | 16, 390 |
| BstV1I | GCAGC | 8 cut(s) | 280, 337, 349, 352, 355, 1091, 1101, 1177 |
| BstV2I | GAAGAC | 1 cut(s) | 331 |
| BstX2I | RGATCY | 3 cut(s) | 1266, 1531, 1690 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 112, 224, 497, 660 |
| BstYI | RGATCY | 3 cut(s) | 1266, 1531, 1690 |
| Bsu36I | CCTNAGG | 1 cut(s) | 582 |
| BsuI | GTATCC | 1 cut(s) | 284 |
| BtgI | CCRYGG | 2 cut(s) | 496, 853 |
| BtgZI | GCGATG | 1 cut(s) | 1130 |
| BtrI | CACGTC | 2 cut(s) | 1212, 1324 |
| BtsCI | GGATG | 8 cut(s) | 157, 427, 459, 580, 781, 871, 1292, 1571 |
| BtsIMutI | CAGTG | 1 cut(s) | 1562 |
| BveI | ACCTGC | 1 cut(s) | 1402 |
| Cac8I | GCNNGC | 5 cut(s) | 23, 63, 833, 906, 1163 |
| CaiI | CAGNNNCTG | 1 cut(s) | 197 |
| CciI | TCATGA | 1 cut(s) | 961 |
| CfoI | GCGC | 1 cut(s) | 362 |
| Cfr10I | RCCGGY | 3 cut(s) | 831, 904, 1117 |
| Csp6I | GTAC | 6 cut(s) | 76, 213, 671, 971, 990, 1734 |
| CviQI | GTAC | 6 cut(s) | 76, 213, 671, 971, 990, 1734 |
| DdeI | CTNAG | 1 cut(s) | 582 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1034 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1034 |
| EaeI | YGGCCR | 2 cut(s) | 748, 1359 |
| Eam1104I | CTCTTC | 1 cut(s) | 1725 |
| EarI | CTCTTC | 1 cut(s) | 1725 |
| EciI | GGCGGA | 2 cut(s) | 818, 1343 |
| Ecl136II | GAGCTC | 1 cut(s) | 169 |
| Eco130I | CCWWGG | 4 cut(s) | 431, 496, 799, 853 |
| Eco147I | AGGCCT | 1 cut(s) | 287 |
| Eco24I | GRGCYC | 4 cut(s) | 171, 807, 1230, 1497 |
| Eco31I | GGTCTC | 2 cut(s) | 506, 1627 |
| Eco47I | GGWCC | 5 cut(s) | 392, 487, 586, 682, 817 |
| Eco53kI | GAGCTC | 1 cut(s) | 169 |
| Eco81I | CCTNAGG | 1 cut(s) | 582 |
| Eco88I | CYCGRG | 2 cut(s) | 522, 1490 |
| EcoICRI | GAGCTC | 1 cut(s) | 169 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 281 |
| EcoO109I | RGGNCCY | 5 cut(s) | 586, 682, 804, 1226, 1227 |
| EcoRII | CCWGG | 7 cut(s) | 287, 395, 596, 652, 673, 806, 922 |
| EcoT14I | CCWWGG | 4 cut(s) | 431, 496, 799, 853 |
| EcoT22I | ATGCAT | 1 cut(s) | 63 |
| EcoT38I | GRGCYC | 4 cut(s) | 171, 807, 1230, 1497 |
| ErhI | CCWWGG | 4 cut(s) | 431, 496, 799, 853 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1228, 1260 |
| FaqI | GGGAC | 7 cut(s) | 572, 695, 803, 882, 1040, 1048, 1535 |
| FauI | CCCGC | 2 cut(s) | 1015, 1065 |
| FauNDI | CATATG | 1 cut(s) | 753 |
| FbaI | TGATCA | 1 cut(s) | 964 |
| FblI | GTMKAC | 1 cut(s) | 1038 |
| FokI | GGATG | 8 cut(s) | 164, 414, 446, 587, 768, 858, 1279, 1558 |
| FriOI | GRGCYC | 4 cut(s) | 171, 807, 1230, 1497 |
| FspBI | CTAG | 1 cut(s) | 1133 |
| GlaI | GCGC | 1 cut(s) | 361 |
| GsaI | CCCAGC | 1 cut(s) | 220 |
| GsuI | CTGGAG | 1 cut(s) | 636 |
| HhaI | GCGC | 1 cut(s) | 362 |
| Hin6I | GCGC | 1 cut(s) | 360 |
| HinP1I | GCGC | 1 cut(s) | 360 |
| HincII | GTYRAC | 1 cut(s) | 1039 |
| HindII | GTYRAC | 1 cut(s) | 1039 |
| HinfI | GANTC | 8 cut(s) | 27, 268, 520, 632, 1373, 1567, 1612, 1660 |
| HphI | GGTGA | 5 cut(s) | 277, 1037, 1106, 1206, 1745 |
| Hpy166II | GTNNAC | 5 cut(s) | 992, 1039, 1259, 1377, 1430 |
| Hpy188I | TCNGA | 4 cut(s) | 32, 721, 771, 1611 |
| Hpy188III | TCNNGA | 8 cut(s) | 383, 524, 538, 566, 848, 878, 962, 1502 |
| Hpy8I | GTNNAC | 5 cut(s) | 992, 1039, 1259, 1377, 1430 |
| Hpy99I | CGWCG | 3 cut(s) | 897, 1043, 1660 |
| HpyAV | CCTTC | 8 cut(s) | 831, 933, 1182, 1451, 1592, 1600, 1605, 1626 |
| HpyCH4III | ACNGT | 3 cut(s) | 265, 446, 765 |
| HpyCH4IV | ACGT | 5 cut(s) | 184, 336, 1041, 1211, 1323 |
| HpyCH4V | TGCA | 7 cut(s) | 61, 65, 316, 791, 1336, 1411, 1742 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 22, 293, 359, 368, 711, 1397, 1748 |
| HpyF3I | CTNAG | 1 cut(s) | 582 |
| HpySE526I | ACGT | 5 cut(s) | 184, 336, 1041, 1211, 1323 |
| HspAI | GCGC | 1 cut(s) | 360 |
| KflI | GGGWCCC | 1 cut(s) | 682 |
| Kpn2I | TCCGGA | 1 cut(s) | 1501 |
| KpnI | GGTACC | 2 cut(s) | 216, 974 |
| KroI | GCCGGC | 2 cut(s) | 831, 904 |
| KroNI | GCCGGC | 2 cut(s) | 833, 906 |
| Ksp22I | TGATCA | 1 cut(s) | 964 |
| LmnI | GCTCC | 3 cut(s) | 646, 925, 1612 |
| Lsp1109I | GCAGC | 8 cut(s) | 280, 337, 349, 352, 355, 1091, 1101, 1177 |
| LweI | GCATC | 4 cut(s) | 109, 762, 1398, 1699 |
| MaeI | CTAG | 1 cut(s) | 1133 |
| MaeII | ACGT | 5 cut(s) | 184, 336, 1041, 1211, 1323 |
| MaeIII | GTNAC | 2 cut(s) | 1025, 1212 |
| MboII | GAAGA | 5 cut(s) | 331, 1167, 1281, 1530, 1712 |
| MfeI | CAATTG | 1 cut(s) | 1766 |
| MflI | RGATCY | 3 cut(s) | 1266, 1531, 1690 |
| MhlI | GDGCHC | 5 cut(s) | 171, 643, 807, 1230, 1497 |
| MlsI | TGGCCA | 1 cut(s) | 750 |
| MluCI | AATT | 5 cut(s) | 552, 1627, 1743, 1757, 1766 |
| MluI | ACGCGT | 1 cut(s) | 14 |
| MluNI | TGGCCA | 1 cut(s) | 750 |
| MlyI | GAGTC | 6 cut(s) | 21, 514, 626, 1382, 1561, 1606 |
| MmeI | TCCRAC | 1 cut(s) | 1634 |
| Mox20I | TGGCCA | 1 cut(s) | 750 |
| Mph1103I | ATGCAT | 1 cut(s) | 63 |
| MroI | TCCGGA | 1 cut(s) | 1501 |
| MroNI | GCCGGC | 2 cut(s) | 831, 904 |
| MscI | TGGCCA | 1 cut(s) | 750 |
| MseI | TTAA | 1 cut(s) | 47 |
| MslI | CAYNNNNRTG | 4 cut(s) | 110, 876, 1382, 1511 |
| Msp20I | TGGCCA | 1 cut(s) | 750 |
| MspA1I | CMGCKG | 4 cut(s) | 220, 735, 1016, 1114 |
| MunI | CAATTG | 1 cut(s) | 1766 |
| MvaI | CCWGG | 7 cut(s) | 289, 397, 598, 654, 675, 808, 924 |
| MvnI | CGCG | 2 cut(s) | 16, 390 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 22, 293, 359, 368, 711, 1397, 1748 |
| NaeI | GCCGGC | 2 cut(s) | 833, 906 |
| NciI | CCSGG | 3 cut(s) | 860, 1125, 1701 |
| NcoI | CCATGG | 2 cut(s) | 496, 853 |
| NdeI | CATATG | 1 cut(s) | 753 |
| NgoMIV | GCCGGC | 2 cut(s) | 831, 904 |
| NmuCI | GTSAC | 2 cut(s) | 1025, 1212 |
| NsiI | ATGCAT | 1 cut(s) | 63 |
| NspI | RCATGY | 5 cut(s) | 25, 65, 998, 1336, 1510 |
| PaeI | GCATGC | 2 cut(s) | 25, 65 |
| PagI | TCATGA | 1 cut(s) | 961 |
| PceI | AGGCCT | 1 cut(s) | 287 |
| PciI | ACATGT | 2 cut(s) | 994, 1506 |
| PdiI | GCCGGC | 2 cut(s) | 833, 906 |
| PfeI | GAWTC | 2 cut(s) | 268, 1660 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 854, 1091 |
| PfoI | TCCNGGA | 1 cut(s) | 1123 |
| PleI | GAGTC | 6 cut(s) | 21, 514, 626, 1381, 1561, 1606 |
| PpsI | GAGTC | 6 cut(s) | 21, 514, 626, 1381, 1561, 1606 |
| PpuMI | RGGWCCY | 2 cut(s) | 586, 682 |
| PscI | ACATGT | 2 cut(s) | 994, 1506 |
| PshAI | GACNNNNGTC | 1 cut(s) | 397 |
| Psp124BI | GAGCTC | 1 cut(s) | 171 |
| Psp5II | RGGWCCY | 2 cut(s) | 586, 682 |
| Psp6I | CCWGG | 7 cut(s) | 287, 395, 596, 652, 673, 806, 922 |
| PspFI | CCCAGC | 1 cut(s) | 216 |
| PspGI | CCWGG | 7 cut(s) | 287, 395, 596, 652, 673, 806, 922 |
| PspOMI | GGGCCC | 3 cut(s) | 803, 1226, 1493 |
| PspPPI | RGGWCCY | 2 cut(s) | 586, 682 |
| PstNI | CAGNNNCTG | 1 cut(s) | 197 |
| PsuI | RGATCY | 3 cut(s) | 1266, 1531, 1690 |
| PvuII | CAGCTG | 2 cut(s) | 220, 1016 |
| RsaI | GTAC | 6 cut(s) | 77, 214, 672, 972, 991, 1735 |
| RsaNI | GTAC | 6 cut(s) | 76, 213, 671, 971, 990, 1734 |
| RseI | CAYNNNNRTG | 4 cut(s) | 110, 876, 1382, 1511 |
| SacI | GAGCTC | 1 cut(s) | 171 |
| SalI | GTCGAC | 1 cut(s) | 1037 |
| SaqAI | TTAA | 1 cut(s) | 47 |
| SchI | GAGTC | 6 cut(s) | 21, 514, 626, 1382, 1561, 1606 |
| SduI | GDGCHC | 5 cut(s) | 171, 643, 807, 1230, 1497 |
| SfaNI | GCATC | 4 cut(s) | 109, 762, 1398, 1699 |
| SinI | GGWCC | 5 cut(s) | 392, 487, 586, 682, 817 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 110, 876, 1382, 1511 |
| SmlI | CTYRAG | 3 cut(s) | 566, 1152, 1234 |
| SmoI | CTYRAG | 3 cut(s) | 566, 1152, 1234 |
| SphI | GCATGC | 2 cut(s) | 25, 65 |
| Sse9I | AATT | 5 cut(s) | 552, 1627, 1743, 1757, 1766 |
| SseBI | AGGCCT | 1 cut(s) | 287 |
| SspMI | CTAG | 1 cut(s) | 1133 |
| SstI | GAGCTC | 1 cut(s) | 171 |
| StuI | AGGCCT | 1 cut(s) | 287 |
| StyI | CCWWGG | 4 cut(s) | 431, 496, 799, 853 |
| TaaI | ACNGT | 3 cut(s) | 265, 446, 765 |
| TaiI | ACGT | 5 cut(s) | 187, 339, 1044, 1214, 1326 |
| TaqI | TCGA | 2 cut(s) | 1038, 1658 |
| TaqII | GACCGA | 1 cut(s) | 1609 |
| TasI | AATT | 5 cut(s) | 552, 1627, 1743, 1757, 1766 |
| TatI | WGTACW | 1 cut(s) | 75 |
| TauI | GCSGC | 2 cut(s) | 1171, 1715 |
| TfiI | GAWTC | 2 cut(s) | 268, 1660 |
| Tru1I | TTAA | 1 cut(s) | 47 |
| Tru9I | TTAA | 1 cut(s) | 47 |
| TscAI | CASTG | 1 cut(s) | 1569 |
| TseFI | GTSAC | 2 cut(s) | 1025, 1212 |
| TseI | GCWGC | 8 cut(s) | 293, 350, 362, 365, 368, 1104, 1114, 1165 |
| Tsp45I | GTSAC | 2 cut(s) | 1025, 1212 |
| TspDTI | ATGAA | 6 cut(s) | 46, 463, 723, 1167, 1281, 1587 |
| TspGWI | ACGGA | 1 cut(s) | 774 |
| TspRI | CASTG | 1 cut(s) | 1569 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 854, 1091 |
| VpaK11BI | GGWCC | 5 cut(s) | 392, 487, 586, 682, 817 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 281 |
| XceI | RCATGY | 5 cut(s) | 25, 65, 998, 1336, 1510 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1384 |
| XmiI | GTMKAC | 1 cut(s) | 1038 |
| XspI | CTAG | 1 cut(s) | 1133 |
| Zsp2I | ATGCAT | 1 cut(s) | 63 |