Rw3G024120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0010631
Physical Location & Seq
Reverse (-)
30769985 .. 30775474
5490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G024120.1

Sequence Viewer

Length: 1212 bp
ATGTCTCATCATTCGTCTACCTACCACCTTGGGCCATGGTTAGCAGTCTCTTCTCTCCGCCGACCTCTCCATGATCCAGATCATGGACTGGATATTGGTAATCCTCGTGATATTGCATTACACAGGCCCTTGCTGGTCCCTAATCCTGCTCTTGGTCTGCCAAATGGAAGGAACTTGGTTGTTCTTGCTCATGATCAAGTACATGTTATACATCCTGGTACACATGTTGTTTTGGGTGTTCCGGTAGTTGCAGGTGACATTCAGGTCGATGTTATTCCCTGTGTCACGCAGTCCCCTGCCCTTGATCTACCTCCACGTACTGGTGATGTTGGCTGGAATCCTCTGCCGGTTCCCGAAACCCTAGTTTTGGCTCATCACTCACAAGATCCAGCTGCGTTTGCTCTTGCCCAGGCGCAAGCCCAAGCCTATTTGATGCAGGTTGATCCGGTTTGTGAACCAGCCCTCATTCAAGTCTTGTTGGCCCAACAGGAAGCTGTTTTGGACCCTACTCTACTCGGGCCCAACCCGGACATGTCAATGTTTGATAATCCAGTAGATCCATCTTCTCAATCAGTCCATTTTCAAGCACAGACTCCATCCCCGACCCTTCCTCCCTTCCTTTCATATCAAGCTCCGACTCCTTTGGTATCCAATTCTGCTTCTCCATTATCAGTTCTCCCGTCGGTTCCAGCTTTTCCTTTCTCTAGTGCTAGGGATCTTGTGCCAGGTTTCGATGCGGCCTCTCTTCCTCCTTTGGGTGCCCTTGCAATTCTGGCTCACCAATTCAAACAATTGCAACTCCGGAAGAGATTGCATGTGGCCCTTACTGATTCTTCGAATACTTTCAAGAAACAGAAGGTGATGGCCGTTGTGGAACATCCACCTTCTCCTCTGGTTTCTGTTCCCCTTCCCCCACGACTACGTCGATCCCGTGCTTCCCCTGGTGCCGGTCGTGGTCGTGGTCTTAATCCTCAGGTCACACATCCTTCTTTTCCTTTAGTTTTGGAAGTTGGGCAGTCTAGCAATATGGAAGTCACTCAGGATGAATATGTGGTTCATCTTCCCCCACCCTTTGAGGACACACCTGTTTCACTTCCTGCTTGTGAGTCTTCTGTTATTCAGGCTATTCCTTTGTTTAGTGGTGTGGCTGATGATCAGCTGATTTGGCCTCACGTTAAGAATGGCAGCTATACGGTGGATGTGCCCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

403

Amino Acids

43.2

Weight (kDa)

5.89

Isoelectric Point (pI)

53.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 242
AasI GACNNNNNNGTC 1 cut(s) 263
Acc36I ACCTGC 2 cut(s) 242, 427
AccB1I GGYRCC 2 cut(s) 758, 944
AccB7I CCANNNNNTGG 2 cut(s) 83, 320
AccI GTMKAC 1 cut(s) 17
AccIII TCCGGA 1 cut(s) 801
AciI CCGC 2 cut(s) 58, 737
AclWI GGATC 6 cut(s) 68, 380, 437, 551, 723, 921
AcoI YGGCCR 1 cut(s) 864
AfaI GTAC 3 cut(s) 201, 220, 319
AfiI CCNNNNNNNGG 6 cut(s) 83, 152, 320, 367, 755, 947
AflIII ACRYGT 3 cut(s) 202, 223, 531
AgsI TTSAA 4 cut(s) 470, 584, 787, 847
AjnI CCWGG 4 cut(s) 214, 408, 724, 940
AluBI AGCT 6 cut(s) 392, 494, 632, 692, 1159, 1188
AluI AGCT 6 cut(s) 392, 494, 632, 692, 1159, 1188
Alw26I GTCTC 2 cut(s) 9, 52
AlwI GGATC 6 cut(s) 68, 380, 437, 551, 723, 921
Ama87I CYCGRG 1 cut(s) 515
Aor13HI TCCGGA 1 cut(s) 801
AoxI GGCC 8 cut(s) 32, 125, 480, 518, 738, 819, 864, 1166
ApaI GGGCCC 1 cut(s) 522
ApeKI GCWGC 2 cut(s) 392, 1185
Asp700I GAANNNNTTC 1 cut(s) 842
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 8 cut(s) 32, 126, 136, 481, 502, 518, 519, 820
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 4 cut(s) 266, 335, 770, 871
AsuII TTCGAA 1 cut(s) 836
AvaI CYCGRG 1 cut(s) 515
AvaII GGWCC 2 cut(s) 136, 502
AxyI CCTNAGG 1 cut(s) 972
BaeGI GKGCMC 3 cut(s) 522, 763, 1206
BaeI ACNNNNGTAYC 2 cut(s) 210, 243
BanI GGYRCC 2 cut(s) 758, 944
BanII GRGCYC 1 cut(s) 522
BauI CACGAG 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 1101
BbvI GCAGC 2 cut(s) 379, 1197
BccI CCATC 3 cut(s) 568, 604, 856
BceAI ACGGC 1 cut(s) 851
BciT130I CCWGG 4 cut(s) 216, 410, 726, 942
BciVI GTATCC 1 cut(s) 658
BclI TGATCA 2 cut(s) 193, 1153
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 2 cut(s) 9, 52
BfaI CTAG 4 cut(s) 362, 705, 711, 1020
BfuAI ACCTGC 2 cut(s) 242, 427
BfuI GTATCC 1 cut(s) 658
BisI GCNGC 3 cut(s) 393, 738, 1186
BlsI GCNGC 3 cut(s) 394, 739, 1187
Bme1390I CCNGG 5 cut(s) 216, 410, 527, 726, 942
Bme18I GGWCC 2 cut(s) 136, 502
BmeT110I CYCGRG 1 cut(s) 515
BmgT120I GGNCC 8 cut(s) 32, 126, 136, 481, 502, 518, 519, 820
BmiI GGNNCC 7 cut(s) 138, 351, 504, 520, 687, 760, 946
BmrFI CCNGG 5 cut(s) 216, 410, 527, 726, 942
BmsI GCATC 2 cut(s) 423, 724
BpiI GAAGAC 1 cut(s) 1101
Bpu14I TTCGAA 1 cut(s) 836
BpuMI CCSGG 1 cut(s) 527
BsaAI YACGTR 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 78
BsaJI CCNNGG 4 cut(s) 28, 35, 408, 940
BsaWI WCCGGW 3 cut(s) 241, 445, 801
BsaXI ACNNNNNCTCC 2 cut(s) 595, 625
Bsc4I CCNNNNNNNGG 6 cut(s) 83, 152, 320, 367, 755, 947
Bse118I RCCGGY 2 cut(s) 346, 947
Bse1I ACTGG 3 cut(s) 93, 325, 551
Bse21I CCTNAGG 1 cut(s) 972
Bse8I GATNNNNATC 1 cut(s) 78
BseAI TCCGGA 1 cut(s) 801
BseBI CCWGG 4 cut(s) 216, 410, 726, 942
BseDI CCNNGG 4 cut(s) 28, 35, 408, 940
BseGI GGATG 6 cut(s) 211, 596, 877, 982, 1048, 1204
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 6 cut(s) 83, 152, 320, 367, 755, 947
BseMII CTCAG 2 cut(s) 986, 1052
BseNI ACTGG 3 cut(s) 93, 325, 551
BseRI GAGGAG 1 cut(s) 879
BseSI GKGCMC 3 cut(s) 522, 763, 1206
BseXI GCAGC 2 cut(s) 379, 1197
Bsh1285I CGRYCG 1 cut(s) 952
BshFI GGCC 8 cut(s) 34, 127, 482, 520, 740, 821, 866, 1168
BshNI GGYRCC 2 cut(s) 758, 944
BsiEI CGRYCG 1 cut(s) 952
BsiHKCI CYCGRG 1 cut(s) 515
BsiSI CCGG 6 cut(s) 242, 347, 446, 527, 802, 948
BslFI GGGAC 2 cut(s) 122, 277
BslI CCNNNNNNNGG 6 cut(s) 83, 152, 320, 367, 755, 947
BsmAI GTCTC 2 cut(s) 9, 52
BsmFI GGGAC 2 cut(s) 122, 277
BsnI GGCC 8 cut(s) 34, 127, 482, 520, 740, 821, 866, 1168
BsoBI CYCGRG 1 cut(s) 515
Bsp119I TTCGAA 1 cut(s) 836
Bsp120I GGGCCC 1 cut(s) 518
Bsp1286I GDGCHC 3 cut(s) 522, 763, 1206
Bsp13I TCCGGA 1 cut(s) 801
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 2 cut(s) 58, 737
BspANI GGCC 8 cut(s) 34, 127, 482, 520, 740, 821, 866, 1168
BspCNI CTCAG 2 cut(s) 985, 1051
BspEI TCCGGA 1 cut(s) 801
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 7 cut(s) 138, 351, 504, 520, 687, 760, 946
BspMI ACCTGC 2 cut(s) 242, 427
BspPI GGATC 6 cut(s) 68, 380, 437, 551, 723, 921
BspT104I TTCGAA 1 cut(s) 836
BspT107I GGYRCC 2 cut(s) 758, 944
BsrFI RCCGGY 2 cut(s) 346, 947
BsrI ACTGG 3 cut(s) 93, 325, 551
BssAI RCCGGY 2 cut(s) 346, 947
BssECI CCNNGG 4 cut(s) 28, 35, 408, 940
BssSI CACGAG 1 cut(s) 105
BssT1I CCWWGG 2 cut(s) 28, 35
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 4 cut(s) 216, 410, 726, 942
Bst4CI ACNGT 1 cut(s) 1195
Bst6I CTCTTC 3 cut(s) 55, 750, 800
BstBAI YACGTR 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 836
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 2 cut(s) 972, 1038
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 6 cut(s) 211, 596, 877, 982, 1048, 1204
BstHHI GCGC 1 cut(s) 415
BstMAI GTCTC 2 cut(s) 9, 52
BstMCI CGRYCG 1 cut(s) 952
BstMWI GCNNNNNNNGC 3 cut(s) 398, 773, 1165
BstNI CCWGG 4 cut(s) 216, 410, 726, 942
BstNSI RCATGY 4 cut(s) 206, 227, 535, 818
BstSCI CCNGG 5 cut(s) 214, 408, 525, 724, 940
BstSLI GKGCMC 3 cut(s) 522, 763, 1206
BstV1I GCAGC 2 cut(s) 379, 1197
BstV2I GAAGAC 1 cut(s) 1101
BstX2I RGATCY 3 cut(s) 385, 556, 715
BstYI RGATCY 3 cut(s) 385, 556, 715
Bsu36I CCTNAGG 1 cut(s) 972
BsuI GTATCC 1 cut(s) 658
BsuRI GGCC 8 cut(s) 34, 127, 482, 520, 740, 821, 866, 1168
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 6 cut(s) 211, 596, 877, 982, 1048, 1204
BveI ACCTGC 2 cut(s) 242, 427
Cac8I GCNNGC 1 cut(s) 417
CciI TCATGA 1 cut(s) 190
CfoI GCGC 1 cut(s) 415
Cfr10I RCCGGY 2 cut(s) 346, 947
Cfr13I GGNCC 8 cut(s) 32, 126, 136, 481, 502, 518, 519, 820
Csp6I GTAC 3 cut(s) 200, 219, 318
CviAII CATG 8 cut(s) 36, 71, 83, 191, 203, 224, 532, 815
CviQI GTAC 3 cut(s) 200, 219, 318
DdeI CTNAG 2 cut(s) 972, 1038
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 864
Eam1104I CTCTTC 3 cut(s) 55, 750, 800
EarI CTCTTC 3 cut(s) 55, 750, 800
EciI GGCGGA 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 28, 35
Eco24I GRGCYC 1 cut(s) 522
Eco47I GGWCC 2 cut(s) 136, 502
Eco81I CCTNAGG 1 cut(s) 972
Eco88I CYCGRG 1 cut(s) 515
EcoO109I RGGNCCY 1 cut(s) 126
EcoRII CCWGG 4 cut(s) 214, 408, 724, 940
EcoT14I CCWWGG 2 cut(s) 28, 35
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 2 cut(s) 28, 35
FaeI CATG 8 cut(s) 39, 74, 86, 194, 206, 227, 535, 818
FaqI GGGAC 2 cut(s) 122, 277
FatI CATG 8 cut(s) 35, 70, 82, 190, 202, 223, 531, 814
FbaI TGATCA 2 cut(s) 193, 1153
FblI GTMKAC 1 cut(s) 17
Fnu4HI GCNGC 3 cut(s) 393, 738, 1186
FokI GGATG 5 cut(s) 198, 583, 864, 969, 1055
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 3 cut(s) 393, 738, 1186
FspBI CTAG 4 cut(s) 362, 705, 711, 1020
GlaI GCGC 1 cut(s) 414
GluI GCNGC 3 cut(s) 393, 738, 1186
HaeIII GGCC 8 cut(s) 34, 127, 482, 520, 740, 821, 866, 1168
HapII CCGG 6 cut(s) 242, 347, 446, 527, 802, 948
HhaI GCGC 1 cut(s) 415
Hin1II CATG 8 cut(s) 39, 74, 86, 194, 206, 227, 535, 818
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HinfI GANTC 5 cut(s) 337, 592, 637, 830, 1106
HpaII CCGG 6 cut(s) 242, 347, 446, 527, 802, 948
HphI GGTGA 4 cut(s) 266, 335, 770, 871
Hpy166II GTNNAC 3 cut(s) 18, 221, 455
Hpy188I TCNGA 1 cut(s) 636
Hpy188III TCNNGA 7 cut(s) 77, 107, 191, 353, 802, 847, 1040
Hpy8I GTNNAC 3 cut(s) 18, 221, 455
Hpy99I CGWCG 2 cut(s) 685, 927
HpyAV CCTTC 7 cut(s) 162, 617, 625, 850, 894, 917, 996
HpyCH4III ACNGT 1 cut(s) 1195
HpyCH4IV ACGT 3 cut(s) 316, 922, 1173
HpyCH4V TGCA 6 cut(s) 116, 251, 436, 767, 796, 814
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 773, 1165
HpyF3I CTNAG 2 cut(s) 972, 1038
HpySE526I ACGT 3 cut(s) 316, 922, 1173
Hsp92II CATG 8 cut(s) 39, 74, 86, 194, 206, 227, 535, 818
HspAI GCGC 1 cut(s) 413
Kpn2I TCCGGA 1 cut(s) 801
Ksp22I TGATCA 2 cut(s) 193, 1153
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 2 cut(s) 379, 1197
LweI GCATC 2 cut(s) 423, 724
MaeI CTAG 4 cut(s) 362, 705, 711, 1020
MaeII ACGT 3 cut(s) 316, 922, 1173
MaeIII GTNAC 4 cut(s) 254, 283, 976, 1033
MboII GAAGA 7 cut(s) 42, 555, 737, 817, 825, 1052, 1101
MfeI CAATTG 1 cut(s) 791
MflI RGATCY 3 cut(s) 385, 556, 715
MhlI GDGCHC 3 cut(s) 522, 763, 1206
MluCI AATT 4 cut(s) 652, 768, 782, 791
MlyI GAGTC 3 cut(s) 586, 631, 1115
MmeI TCCRAC 1 cut(s) 659
MroI TCCGGA 1 cut(s) 801
MroXI GAANNNNTTC 1 cut(s) 842
MseI TTAA 2 cut(s) 966, 1176
MslI CAYNNNNRTG 1 cut(s) 536
MspA1I CMGCKG 2 cut(s) 392, 1159
MspI CCGG 6 cut(s) 242, 347, 446, 527, 802, 948
MspR9I CCNGG 5 cut(s) 216, 410, 527, 726, 942
MunI CAATTG 1 cut(s) 791
MvaI CCWGG 4 cut(s) 216, 410, 726, 942
MwoI GCNNNNNNNGC 3 cut(s) 398, 773, 1165
NciI CCSGG 1 cut(s) 527
NcoI CCATGG 1 cut(s) 35
NlaIII CATG 8 cut(s) 39, 74, 86, 194, 206, 227, 535, 818
NlaIV GGNNCC 7 cut(s) 138, 351, 504, 520, 687, 760, 946
NmuCI GTSAC 4 cut(s) 254, 283, 976, 1033
NspI RCATGY 4 cut(s) 206, 227, 535, 818
NspV TTCGAA 1 cut(s) 836
PagI TCATGA 1 cut(s) 190
PaqCI CACCTGC 1 cut(s) 242
PciI ACATGT 3 cut(s) 202, 223, 531
PcsI WCGNNNNNNNCGW 2 cut(s) 922, 928
PdmI GAANNNNTTC 1 cut(s) 842
PfeI GAWTC 2 cut(s) 337, 830
PflFI GACNNNGTC 1 cut(s) 921
PflMI CCANNNNNTGG 2 cut(s) 83, 320
PkrI GCNGC 3 cut(s) 394, 739, 1187
PleI GAGTC 3 cut(s) 586, 631, 1114
PpsI GAGTC 3 cut(s) 586, 631, 1114
Ppu21I YACGTR 1 cut(s) 317
PscI ACATGT 3 cut(s) 202, 223, 531
Psp6I CCWGG 4 cut(s) 214, 408, 724, 940
PspGI CCWGG 4 cut(s) 214, 408, 724, 940
PspN4I GGNNCC 7 cut(s) 138, 351, 504, 520, 687, 760, 946
PspOMI GGGCCC 1 cut(s) 518
PspPI GGNCC 8 cut(s) 32, 126, 136, 481, 502, 518, 519, 820
PsuI RGATCY 3 cut(s) 385, 556, 715
PsyI GACNNNGTC 1 cut(s) 921
PvuII CAGCTG 2 cut(s) 392, 1159
RsaI GTAC 3 cut(s) 201, 220, 319
RsaNI GTAC 3 cut(s) 200, 219, 318
RseI CAYNNNNRTG 1 cut(s) 536
SaqAI TTAA 2 cut(s) 966, 1176
SatI GCNGC 3 cut(s) 393, 738, 1186
Sau96I GGNCC 8 cut(s) 32, 126, 136, 481, 502, 518, 519, 820
SchI GAGTC 3 cut(s) 586, 631, 1115
ScrFI CCNGG 5 cut(s) 216, 410, 527, 726, 942
SduI GDGCHC 3 cut(s) 522, 763, 1206
SfaNI GCATC 2 cut(s) 423, 724
SfuI TTCGAA 1 cut(s) 836
SinI GGWCC 2 cut(s) 136, 502
SmiMI CAYNNNNRTG 1 cut(s) 536
Sse9I AATT 4 cut(s) 652, 768, 782, 791
SsiI CCGC 2 cut(s) 58, 737
SspMI CTAG 4 cut(s) 362, 705, 711, 1020
StyD4I CCNGG 5 cut(s) 214, 408, 525, 724, 940
StyI CCWWGG 2 cut(s) 28, 35
TaaI ACNGT 1 cut(s) 1195
TaiI ACGT 3 cut(s) 319, 925, 1176
TaqI TCGA 4 cut(s) 267, 732, 836, 925
TasI AATT 4 cut(s) 652, 768, 782, 791
TatI WGTACW 1 cut(s) 199
TauI GCSGC 1 cut(s) 740
TfiI GAWTC 2 cut(s) 337, 830
Tru1I TTAA 2 cut(s) 966, 1176
Tru9I TTAA 2 cut(s) 966, 1176
TseFI GTSAC 4 cut(s) 254, 283, 976, 1033
TseI GCWGC 2 cut(s) 392, 1185
Tsp45I GTSAC 4 cut(s) 254, 283, 976, 1033
TspDTI ATGAA 3 cut(s) 612, 1046, 1059
Tth111I GACNNNGTC 1 cut(s) 921
Van91I CCANNNNNTGG 2 cut(s) 83, 320
VpaK11BI GGWCC 2 cut(s) 136, 502
XceI RCATGY 4 cut(s) 206, 227, 535, 818
XmiI GTMKAC 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 842
XspI CTAG 4 cut(s) 362, 705, 711, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.