Rh3CG304900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0010631
Physical Location & Seq
Reverse (-)
31794302 .. 31795126
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG304900.1

Sequence Viewer

Length: 825 bp
ATGTTGGCAGATCCAGCTGCGTTTGCTCTTGCCCAGGCGCAAGCCCAAGCCTATTTGATGCAGGTTGATCCGGTTTGTGAACCAGCCCTCATTCAAGTCTTGTTGGCCCAACAGGAAGCTGTTTTGGACCCTACTCTACTCGGGCCCAACCCGGACATGTCAATGTTTGATAATCCAGTAGATCCATCTTCTCAATCAGTCCATTTTCAAGCACAGACTCCATCCCCGATCCTTCCTCCCTTCCTTTCATATCAAGCTCCGACTCCTTTGGTATCCAATTATGCTTCTCCATTATCAGTTCTCCCGTCGGTTCCAGCTTTTCCTTTCTCTAGTGCTAGGGATCTTGTGCCAGGTTTCGATGCGGCCTCTCTTCCTCCTTTGGGTGCCCTTACAATTCTGGCTCACCAATTCAAACAATTGCAACTCCGGAAGAGATTGCATGTGGCCCTTACTGATTCTTCGAATACTTTCAAGAAACAGAAGGTGATGGCCGTTGTGGAACATCCACCTTCTCCTCTGGTTTCTGTTCCCCTTCCCCCACGACTACGTCGATCCCGTGCTTCCCCTGGTGCCGGTCGTGGTCGTGGTCTTAATCCTCAGGTCACACATCCTTCTTTTCCTTTAGTTTTGGAAGTTGGGCAGTCTAGCAATATGGAAGTCACTCAGGATGAATATGTGGTTCATCTTCCCCCACCCTTTGAGGACACACCTGTTTCACTTCCTGCTTGTGGTACTCCATCCTCAGATGTCCCTTCATCCTCTAATGATCTTACTCCTGCAGGTGGTATCTGTAGCTGGCCAAGTGCAGCTACGGGTGCGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

28.98

Weight (kDa)

5.27

Isoelectric Point (pI)

63.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 770
Acc36I ACCTGC 2 cut(s) 52, 770
AccB1I GGYRCC 2 cut(s) 383, 569
AccIII TCCGGA 1 cut(s) 426
AciI CCGC 2 cut(s) 362, 818
AclWI GGATC 6 cut(s) 5, 62, 176, 223, 348, 546
AcoI YGGCCR 2 cut(s) 489, 797
AfaI GTAC 1 cut(s) 733
AfiI CCNNNNNNNGG 4 cut(s) 380, 572, 728, 782
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 4 cut(s) 95, 209, 412, 472
AjnI CCWGG 3 cut(s) 33, 349, 565
AluBI AGCT 6 cut(s) 17, 119, 257, 317, 795, 809
AluI AGCT 6 cut(s) 17, 119, 257, 317, 795, 809
AlwI GGATC 6 cut(s) 5, 62, 176, 223, 348, 546
Ama87I CYCGRG 1 cut(s) 140
Aor13HI TCCGGA 1 cut(s) 426
AoxI GGCC 6 cut(s) 105, 143, 363, 444, 489, 797
ApaI GGGCCC 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 17, 806
Asp700I GAANNNNTTC 1 cut(s) 467
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 5 cut(s) 106, 127, 143, 144, 445
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 395, 496
AsuII TTCGAA 1 cut(s) 461
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 1 cut(s) 127
AxyI CCTNAGG 1 cut(s) 597
BaeGI GKGCMC 2 cut(s) 147, 388
BalI TGGCCA 1 cut(s) 799
BanI GGYRCC 2 cut(s) 383, 569
BanII GRGCYC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 4, 818
BccI CCATC 4 cut(s) 193, 229, 481, 745
BceAI ACGGC 1 cut(s) 476
BciT130I CCWGG 3 cut(s) 35, 351, 567
BciVI GTATCC 1 cut(s) 283
BcnI CCSGG 1 cut(s) 152
BfaI CTAG 3 cut(s) 330, 336, 645
BfmI CTRYAG 2 cut(s) 777, 790
BfuAI ACCTGC 2 cut(s) 52, 770
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 3 cut(s) 18, 363, 807
BlsI GCNGC 3 cut(s) 19, 364, 808
Bme1390I CCNGG 4 cut(s) 35, 152, 351, 567
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 5 cut(s) 106, 127, 143, 144, 445
BmiI GGNNCC 5 cut(s) 129, 145, 312, 385, 571
BmrFI CCNGG 4 cut(s) 35, 152, 351, 567
BmsI GCATC 2 cut(s) 48, 349
Bpu14I TTCGAA 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 33, 565
BsaWI WCCGGW 2 cut(s) 70, 426
Bsc4I CCNNNNNNNGG 4 cut(s) 380, 572, 728, 782
Bse118I RCCGGY 1 cut(s) 572
Bse1I ACTGG 1 cut(s) 176
Bse21I CCTNAGG 1 cut(s) 597
BseAI TCCGGA 1 cut(s) 426
BseBI CCWGG 3 cut(s) 35, 351, 567
BseDI CCNNGG 2 cut(s) 33, 565
BseGI GGATG 6 cut(s) 221, 502, 607, 673, 737, 755
BseLI CCNNNNNNNGG 4 cut(s) 380, 572, 728, 782
BseMII CTCAG 3 cut(s) 611, 677, 756
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 504
BseSI GKGCMC 2 cut(s) 147, 388
BseXI GCAGC 2 cut(s) 4, 818
BsgI GTGCAG 1 cut(s) 825
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 6 cut(s) 107, 145, 365, 446, 491, 799
BshNI GGYRCC 2 cut(s) 383, 569
BsiEI CGRYCG 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 4 cut(s) 71, 152, 427, 573
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 4 cut(s) 380, 572, 728, 782
BsmFI GGGAC 1 cut(s) 734
BsnI GGCC 6 cut(s) 107, 145, 365, 446, 491, 799
BsoBI CYCGRG 1 cut(s) 140
Bsp119I TTCGAA 1 cut(s) 461
Bsp120I GGGCCC 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 147, 388
Bsp13I TCCGGA 1 cut(s) 426
Bsp143I GATC 7 cut(s) 10, 67, 181, 228, 340, 551, 766
BspACI CCGC 2 cut(s) 362, 818
BspANI GGCC 6 cut(s) 107, 145, 365, 446, 491, 799
BspCNI CTCAG 3 cut(s) 610, 676, 755
BspEI TCCGGA 1 cut(s) 426
BspLI GGNNCC 5 cut(s) 129, 145, 312, 385, 571
BspMAI CTGCAG 1 cut(s) 781
BspMI ACCTGC 2 cut(s) 52, 770
BspPI GGATC 6 cut(s) 5, 62, 176, 223, 348, 546
BspT104I TTCGAA 1 cut(s) 461
BspT107I GGYRCC 2 cut(s) 383, 569
BsrFI RCCGGY 1 cut(s) 572
BsrI ACTGG 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 572
BssECI CCNNGG 2 cut(s) 33, 565
BssMI GATC 7 cut(s) 10, 67, 181, 228, 340, 551, 766
Bst2UI CCWGG 3 cut(s) 35, 351, 567
Bst6I CTCTTC 2 cut(s) 375, 425
BstBI TTCGAA 1 cut(s) 461
BstC8I GCNNGC 2 cut(s) 42, 797
BstDEI CTNAG 3 cut(s) 597, 663, 742
BstF5I GGATG 6 cut(s) 221, 502, 607, 673, 737, 755
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 7 cut(s) 13, 70, 184, 231, 343, 554, 769
BstMBI GATC 7 cut(s) 10, 67, 181, 228, 340, 551, 766
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 3 cut(s) 14, 23, 815
BstNI CCWGG 3 cut(s) 35, 351, 567
BstNSI RCATGY 2 cut(s) 160, 443
BstSCI CCNGG 4 cut(s) 33, 150, 349, 565
BstSFI CTRYAG 2 cut(s) 777, 790
BstSLI GKGCMC 2 cut(s) 147, 388
BstV1I GCAGC 2 cut(s) 4, 818
BstX2I RGATCY 3 cut(s) 10, 181, 340
BstYI RGATCY 3 cut(s) 10, 181, 340
Bsu36I CCTNAGG 1 cut(s) 597
BsuI GTATCC 1 cut(s) 283
BsuRI GGCC 6 cut(s) 107, 145, 365, 446, 491, 799
BtsCI GGATG 6 cut(s) 221, 502, 607, 673, 737, 755
BveI ACCTGC 2 cut(s) 52, 770
Cac8I GCNNGC 2 cut(s) 42, 797
CfoI GCGC 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 572
Cfr13I GGNCC 5 cut(s) 106, 127, 143, 144, 445
Csp6I GTAC 1 cut(s) 732
CviAII CATG 2 cut(s) 157, 440
CviQI GTAC 1 cut(s) 732
DdeI CTNAG 3 cut(s) 597, 663, 742
DpnI GATC 7 cut(s) 12, 69, 183, 230, 342, 553, 768
DpnII GATC 7 cut(s) 10, 67, 181, 228, 340, 551, 766
EaeI YGGCCR 2 cut(s) 489, 797
Eam1104I CTCTTC 2 cut(s) 375, 425
EarI CTCTTC 2 cut(s) 375, 425
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 127
Eco81I CCTNAGG 1 cut(s) 597
Eco88I CYCGRG 1 cut(s) 140
EcoRII CCWGG 3 cut(s) 33, 349, 565
EcoT38I GRGCYC 1 cut(s) 147
FaeI CATG 2 cut(s) 160, 443
FaiI YATR 6 cut(s) 158, 250, 282, 441, 653, 675
FaqI GGGAC 1 cut(s) 734
FatI CATG 2 cut(s) 156, 439
Fnu4HI GCNGC 3 cut(s) 18, 363, 807
FokI GGATG 6 cut(s) 208, 489, 594, 680, 724, 742
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 3 cut(s) 18, 363, 807
FspBI CTAG 3 cut(s) 330, 336, 645
GlaI GCGC 1 cut(s) 39
GluI GCNGC 3 cut(s) 18, 363, 807
HaeIII GGCC 6 cut(s) 107, 145, 365, 446, 491, 799
HapII CCGG 4 cut(s) 71, 152, 427, 573
HhaI GCGC 1 cut(s) 40
Hin1II CATG 2 cut(s) 160, 443
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 3 cut(s) 217, 262, 455
HpaII CCGG 4 cut(s) 71, 152, 427, 573
HphI GGTGA 2 cut(s) 395, 496
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 2 cut(s) 261, 745
Hpy188III TCNNGA 3 cut(s) 427, 472, 665
Hpy8I GTNNAC 1 cut(s) 80
Hpy99I CGWCG 2 cut(s) 310, 552
HpyAV CCTTC 7 cut(s) 242, 250, 475, 519, 542, 621, 762
HpyCH4IV ACGT 1 cut(s) 547
HpyCH4V TGCA 5 cut(s) 61, 421, 439, 779, 806
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 23, 815
HpyF3I CTNAG 3 cut(s) 597, 663, 742
HpySE526I ACGT 1 cut(s) 547
Hsp92II CATG 2 cut(s) 160, 443
HspAI GCGC 1 cut(s) 38
Kpn2I TCCGGA 1 cut(s) 426
Kzo9I GATC 7 cut(s) 10, 67, 181, 228, 340, 551, 766
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 2 cut(s) 4, 818
LweI GCATC 2 cut(s) 48, 349
MaeI CTAG 3 cut(s) 330, 336, 645
MaeII ACGT 1 cut(s) 547
MaeIII GTNAC 2 cut(s) 601, 658
MalI GATC 7 cut(s) 12, 69, 183, 230, 342, 553, 768
MboI GATC 7 cut(s) 10, 67, 181, 228, 340, 551, 766
MboII GAAGA 5 cut(s) 180, 362, 442, 450, 677
MfeI CAATTG 1 cut(s) 416
MflI RGATCY 3 cut(s) 10, 181, 340
MhlI GDGCHC 2 cut(s) 147, 388
MlsI TGGCCA 1 cut(s) 799
MluCI AATT 4 cut(s) 277, 393, 407, 416
MluNI TGGCCA 1 cut(s) 799
MlyI GAGTC 2 cut(s) 211, 256
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 9 cut(s) 98, 246, 376, 384, 525, 606, 694, 751, 769
Mox20I TGGCCA 1 cut(s) 799
MroI TCCGGA 1 cut(s) 426
MroXI GAANNNNTTC 1 cut(s) 467
MscI TGGCCA 1 cut(s) 799
MseI TTAA 1 cut(s) 591
MslI CAYNNNNRTG 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 799
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 4 cut(s) 71, 152, 427, 573
MspR9I CCNGG 4 cut(s) 35, 152, 351, 567
MunI CAATTG 1 cut(s) 416
MvaI CCWGG 3 cut(s) 35, 351, 567
MwoI GCNNNNNNNGC 3 cut(s) 14, 23, 815
NciI CCSGG 1 cut(s) 152
NdeII GATC 7 cut(s) 10, 67, 181, 228, 340, 551, 766
NlaIII CATG 2 cut(s) 160, 443
NlaIV GGNNCC 5 cut(s) 129, 145, 312, 385, 571
NmuCI GTSAC 2 cut(s) 601, 658
NspI RCATGY 2 cut(s) 160, 443
NspV TTCGAA 1 cut(s) 461
PaqCI CACCTGC 1 cut(s) 770
PciI ACATGT 1 cut(s) 156
PcsI WCGNNNNNNNCGW 2 cut(s) 547, 553
PdmI GAANNNNTTC 1 cut(s) 467
PfeI GAWTC 1 cut(s) 455
PflFI GACNNNGTC 1 cut(s) 546
PkrI GCNGC 3 cut(s) 19, 364, 808
PleI GAGTC 2 cut(s) 211, 256
PpsI GAGTC 2 cut(s) 211, 256
PscI ACATGT 1 cut(s) 156
Psp6I CCWGG 3 cut(s) 33, 349, 565
PspGI CCWGG 3 cut(s) 33, 349, 565
PspN4I GGNNCC 5 cut(s) 129, 145, 312, 385, 571
PspOMI GGGCCC 1 cut(s) 143
PspPI GGNCC 5 cut(s) 106, 127, 143, 144, 445
PstI CTGCAG 1 cut(s) 781
PsuI RGATCY 3 cut(s) 10, 181, 340
PsyI GACNNNGTC 1 cut(s) 546
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 1 cut(s) 733
RsaNI GTAC 1 cut(s) 732
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 3 cut(s) 18, 363, 807
Sau3AI GATC 7 cut(s) 10, 67, 181, 228, 340, 551, 766
Sau96I GGNCC 5 cut(s) 106, 127, 143, 144, 445
SbfI CCTGCAGG 1 cut(s) 781
SchI GAGTC 2 cut(s) 211, 256
ScrFI CCNGG 4 cut(s) 35, 152, 351, 567
SdaI CCTGCAGG 1 cut(s) 781
SduI GDGCHC 2 cut(s) 147, 388
SfaNI GCATC 2 cut(s) 48, 349
SfcI CTRYAG 2 cut(s) 777, 790
SfuI TTCGAA 1 cut(s) 461
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse8387I CCTGCAGG 1 cut(s) 781
Sse9I AATT 4 cut(s) 277, 393, 407, 416
SsiI CCGC 2 cut(s) 362, 818
SspMI CTAG 3 cut(s) 330, 336, 645
StyD4I CCNGG 4 cut(s) 33, 150, 349, 565
TaiI ACGT 1 cut(s) 550
TaqI TCGA 3 cut(s) 357, 461, 550
TasI AATT 4 cut(s) 277, 393, 407, 416
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TseFI GTSAC 2 cut(s) 601, 658
TseI GCWGC 2 cut(s) 17, 806
Tsp45I GTSAC 2 cut(s) 601, 658
TspDTI ATGAA 4 cut(s) 237, 671, 684, 744
Tth111I GACNNNGTC 1 cut(s) 546
VpaK11BI GGWCC 1 cut(s) 127
XceI RCATGY 2 cut(s) 160, 443
XmnI GAANNNNTTC 1 cut(s) 467
XspI CTAG 3 cut(s) 330, 336, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.