Rh1BG146400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010631
Physical Location & Seq
Reverse (-)
24162294 .. 24162629
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG146400.1

Sequence Viewer

Length: 336 bp
ATGCCTCGTCATCCGTCTGCACACCACCTTGGGCCCTGGTTAACGGTCCCTTCTCTCCGCCGACCTTTCCATGATCCAGACCATGGCCTGGATATTGGTCATCCTCGTGATTTTGGATTTCGTCTTCCCATGCCGGCCCCTGATCCTGCTCCTGATTTGCCAAATGGAAGGAACTTGGTTGTTCTTGCTCATGATCAGGTACCTGTTATACCTACTGGTACACATGTTGTTCTGGGTGTTCCAGCTGTTGCAGGTGACATTCTGGTCGACGTTATTCCCTATGTCCCGCAGTCCCCTGCCCTTGATCTACCTCAACGAACTGGTGATGTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.92

Weight (kDa)

5.99

Isoelectric Point (pI)

58.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 242
AasI GACNNNNNNGTC 1 cut(s) 263
Acc36I ACCTGC 1 cut(s) 242
Acc65I GGTACC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 199
AccB7I CCANNNNNTGG 2 cut(s) 83, 88
AccI GTMKAC 1 cut(s) 267
AciI CCGC 2 cut(s) 58, 287
AclWI GGATC 2 cut(s) 68, 137
AfaI GTAC 2 cut(s) 201, 220
AfiI CCNNNNNNNGG 2 cut(s) 83, 88
AflIII ACRYGT 1 cut(s) 223
AjnI CCWGG 2 cut(s) 35, 87
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
AlwI GGATC 2 cut(s) 68, 137
AoxI GGCC 3 cut(s) 32, 85, 135
ApaI GGGCCC 1 cut(s) 36
Asp718I GGTACC 1 cut(s) 199
AspS9I GGNCC 4 cut(s) 32, 33, 46, 136
AsuHPI GGTGA 2 cut(s) 266, 335
AvaII GGWCC 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 36
BaeI ACNNNNGTAYC 2 cut(s) 210, 243
BanI GGYRCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 36
BauI CACGAG 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 116
BciT130I CCWGG 2 cut(s) 37, 89
BclI TGATCA 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 242
Bme1390I CCNGG 2 cut(s) 37, 89
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 4 cut(s) 32, 33, 46, 136
BmiI GGNNCC 4 cut(s) 34, 48, 138, 201
BmrFI CCNGG 2 cut(s) 37, 89
BpiI GAAGAC 1 cut(s) 116
BsaJI CCNNGG 3 cut(s) 28, 35, 82
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 88
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 2 cut(s) 220, 325
BseBI CCWGG 2 cut(s) 37, 89
BseDI CCNNGG 3 cut(s) 28, 35, 82
BseGI GGATG 2 cut(s) 10, 100
BseLI CCNNNNNNNGG 2 cut(s) 83, 88
BseNI ACTGG 2 cut(s) 220, 325
BseSI GKGCMC 1 cut(s) 36
BshFI GGCC 3 cut(s) 34, 87, 137
BshNI GGYRCC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 3 cut(s) 32, 269, 277
BslI CCNNNNNNNGG 2 cut(s) 83, 88
BsmFI GGGAC 3 cut(s) 32, 269, 277
BsnI GGCC 3 cut(s) 34, 87, 137
Bsp120I GGGCCC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 4 cut(s) 73, 142, 193, 304
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 2 cut(s) 58, 287
BspANI GGCC 3 cut(s) 34, 87, 137
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 4 cut(s) 34, 48, 138, 201
BspMI ACCTGC 1 cut(s) 242
BspPI GGATC 2 cut(s) 68, 137
BspT107I GGYRCC 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 2 cut(s) 220, 325
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 3 cut(s) 28, 35, 82
BssMI GATC 4 cut(s) 73, 142, 193, 304
BssSI CACGAG 1 cut(s) 105
BssT1I CCWWGG 2 cut(s) 28, 82
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 37, 89
Bst4CI ACNGT 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 2 cut(s) 10, 100
BstKTI GATC 4 cut(s) 76, 145, 196, 307
BstMBI GATC 4 cut(s) 73, 142, 193, 304
BstNI CCWGG 2 cut(s) 37, 89
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 35, 87
BstSLI GKGCMC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 116
BsuRI GGCC 3 cut(s) 34, 87, 137
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 2 cut(s) 10, 100
BveI ACCTGC 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 135
CciI TCATGA 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 4 cut(s) 32, 33, 46, 136
Csp6I GTAC 2 cut(s) 200, 219
CviAII CATG 5 cut(s) 71, 83, 130, 191, 224
CviJI RGCY 5 cut(s) 34, 87, 137, 245, 333
CviKI_1 RGCY 5 cut(s) 34, 87, 137, 245, 333
CviQI GTAC 2 cut(s) 200, 219
DpnI GATC 4 cut(s) 75, 144, 195, 306
DpnII GATC 4 cut(s) 73, 142, 193, 304
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EciI GGCGGA 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 28, 82
Eco24I GRGCYC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 33
EcoRII CCWGG 2 cut(s) 35, 87
EcoT14I CCWWGG 2 cut(s) 28, 82
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 2 cut(s) 28, 82
FaeI CATG 5 cut(s) 74, 86, 133, 194, 227
FaiI YATR 7 cut(s) 72, 84, 131, 192, 209, 225, 282
FaqI GGGAC 3 cut(s) 32, 269, 277
FatI CATG 5 cut(s) 70, 82, 129, 190, 223
FauI CCCGC 1 cut(s) 294
FbaI TGATCA 1 cut(s) 193
FblI GTMKAC 1 cut(s) 267
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 36
HaeIII GGCC 3 cut(s) 34, 87, 137
HapII CCGG 1 cut(s) 134
Hin1II CATG 5 cut(s) 74, 86, 133, 194, 227
HincII GTYRAC 2 cut(s) 42, 268
HindII GTYRAC 2 cut(s) 42, 268
HpaI GTTAAC 1 cut(s) 42
HpaII CCGG 1 cut(s) 134
HphI GGTGA 2 cut(s) 266, 335
Hpy166II GTNNAC 3 cut(s) 42, 221, 268
Hpy188III TCNNGA 4 cut(s) 77, 107, 152, 191
Hpy8I GTNNAC 3 cut(s) 42, 221, 268
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 60, 162
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 20, 251
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 5 cut(s) 74, 86, 133, 194, 227
KpnI GGTACC 1 cut(s) 203
KroI GCCGGC 1 cut(s) 133
KroNI GCCGGC 1 cut(s) 135
Ksp22I TGATCA 1 cut(s) 193
KspAI GTTAAC 1 cut(s) 42
Kzo9I GATC 4 cut(s) 73, 142, 193, 304
LmnI GCTCC 1 cut(s) 154
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 254
MalI GATC 4 cut(s) 75, 144, 195, 306
MboI GATC 4 cut(s) 73, 142, 193, 304
MboII GAAGA 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 36
MnlI CCTC 3 cut(s) 15, 114, 321
MroNI GCCGGC 1 cut(s) 133
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 37, 89
MvaI CCWGG 2 cut(s) 37, 89
NaeI GCCGGC 1 cut(s) 135
NcoI CCATGG 1 cut(s) 82
NdeII GATC 4 cut(s) 73, 142, 193, 304
NgoMIV GCCGGC 1 cut(s) 133
NlaIII CATG 5 cut(s) 74, 86, 133, 194, 227
NlaIV GGNNCC 4 cut(s) 34, 48, 138, 201
NmuCI GTSAC 1 cut(s) 254
NspI RCATGY 1 cut(s) 227
PagI TCATGA 1 cut(s) 190
PaqCI CACCTGC 1 cut(s) 242
PciI ACATGT 1 cut(s) 223
PdiI GCCGGC 1 cut(s) 135
PflMI CCANNNNNTGG 2 cut(s) 83, 88
PscI ACATGT 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 35, 87
PspGI CCWGG 2 cut(s) 35, 87
PspN4I GGNNCC 4 cut(s) 34, 48, 138, 201
PspOMI GGGCCC 1 cut(s) 32
PspPI GGNCC 4 cut(s) 32, 33, 46, 136
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 2 cut(s) 201, 220
RsaNI GTAC 2 cut(s) 200, 219
RseI CAYNNNNRTG 1 cut(s) 105
SalI GTCGAC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 41
Sau3AI GATC 4 cut(s) 73, 142, 193, 304
Sau96I GGNCC 4 cut(s) 32, 33, 46, 136
ScrFI CCNGG 2 cut(s) 37, 89
SduI GDGCHC 1 cut(s) 36
SetI ASST 9 cut(s) 30, 67, 201, 205, 214, 247, 256, 273, 313
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 105
SsiI CCGC 2 cut(s) 58, 287
StyD4I CCNGG 2 cut(s) 35, 87
StyI CCWWGG 2 cut(s) 28, 82
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 267
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseFI GTSAC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 254
Van91I CCANNNNNTGG 2 cut(s) 83, 88
VpaK11BI GGWCC 1 cut(s) 46
XceI RCATGY 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.