Rh7CG434400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010631
Physical Location & Seq
Forward (+)
56841407 .. 56841772
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG434400.1

Sequence Viewer

Length: 366 bp
ATGTGTTTCCGCTGTGGTCGTCTTGGCCATATGCTTTCACTGTGTCGGATGCCTCGTCATCCGTCTGCCCATCACCTTGGGCCCTGGTTAGCGGTCCCTTCTCTCCGCCGACCGCTCCATGCTCCAGATCATGGCCTGGATATTGGTAATTCTCGTGATATTGCATTCCGCCAGCCCTTGCCGGTCCCTGATCCTGCTCCTGCTTTGCCAAATGGAAGGAACTTGGTTGATCGTCCTCATGATCAGGTACATGTTTTACCTACTGATCCAAATGTTGTTCTGGGTGTTCCGGCTGTTGCAGGTGACATTCAGGTCGAGGTTATTCCCTGTGTCACGCAGGTCCCTGCCCTTGATCTTCCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.13

Weight (kDa)

7.08

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 290
AasI GACNNNNNNGTC 1 cut(s) 311
Acc36I ACCTGC 2 cut(s) 290, 328
AccB7I CCANNNNNTGG 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 115
AciI CCGC 5 cut(s) 10, 92, 106, 113, 169
AclWI GGATC 2 cut(s) 185, 260
AcoI YGGCCR 1 cut(s) 25
AfaI GTAC 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 250
AjnI CCWGG 2 cut(s) 83, 135
AlwI GGATC 2 cut(s) 185, 260
AoxI GGCC 3 cut(s) 25, 80, 133
ApaI GGGCCC 1 cut(s) 84
AspS9I GGNCC 5 cut(s) 80, 81, 94, 184, 340
AsuHPI GGTGA 2 cut(s) 65, 314
AvaII GGWCC 3 cut(s) 94, 184, 340
BaeGI GKGCMC 1 cut(s) 84
BalI TGGCCA 1 cut(s) 27
BanII GRGCYC 1 cut(s) 84
BauI CACGAG 1 cut(s) 153
BccI CCATC 1 cut(s) 78
BciT130I CCWGG 2 cut(s) 85, 137
BclI TGATCA 1 cut(s) 241
BfuAI ACCTGC 2 cut(s) 290, 328
Bme1390I CCNGG 2 cut(s) 85, 137
Bme18I GGWCC 3 cut(s) 94, 184, 340
BmgT120I GGNCC 5 cut(s) 80, 81, 94, 184, 340
BmiI GGNNCC 4 cut(s) 82, 96, 186, 342
BmrFI CCNGG 2 cut(s) 85, 137
BmsI GCATC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 76, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 181
BseBI CCWGG 2 cut(s) 85, 137
BseDI CCNNGG 2 cut(s) 76, 83
BseGI GGATG 2 cut(s) 54, 58
BseLI CCNNNNNNNGG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 3 cut(s) 27, 82, 135
BsiEI CGRYCG 1 cut(s) 113
BsiSI CCGG 2 cut(s) 182, 290
BslFI GGGAC 3 cut(s) 80, 170, 326
BslI CCNNNNNNNGG 1 cut(s) 131
BsmFI GGGAC 3 cut(s) 80, 170, 326
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 3 cut(s) 27, 82, 135
Bsp120I GGGCCC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 6 cut(s) 127, 190, 229, 241, 265, 352
BspACI CCGC 5 cut(s) 10, 92, 106, 113, 169
BspANI GGCC 3 cut(s) 27, 82, 135
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 4 cut(s) 82, 96, 186, 342
BspMI ACCTGC 2 cut(s) 290, 328
BspPI GGATC 2 cut(s) 185, 260
BsrBI CCGCTC 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 76, 83
BssMI GATC 6 cut(s) 127, 190, 229, 241, 265, 352
BssSI CACGAG 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 76
Bst2BI CACGAG 1 cut(s) 153
Bst2UI CCWGG 2 cut(s) 85, 137
Bst4CI ACNGT 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 173
BstF5I GGATG 2 cut(s) 54, 58
BstKTI GATC 6 cut(s) 130, 193, 232, 244, 268, 355
BstMBI GATC 6 cut(s) 127, 190, 229, 241, 265, 352
BstMCI CGRYCG 1 cut(s) 113
BstNI CCWGG 2 cut(s) 85, 137
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 83, 135
BstSLI GKGCMC 1 cut(s) 84
BstXI CCANNNNNNTGG 1 cut(s) 77
BsuRI GGCC 3 cut(s) 27, 82, 135
BtsCI GGATG 2 cut(s) 54, 58
BtsIMutI CAGTG 1 cut(s) 38
BveI ACCTGC 2 cut(s) 290, 328
Cac8I GCNNGC 1 cut(s) 173
CciI TCATGA 1 cut(s) 238
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 5 cut(s) 80, 81, 94, 184, 340
Csp6I GTAC 1 cut(s) 248
CviAII CATG 5 cut(s) 119, 131, 239, 251, 363
CviJI RGCY 5 cut(s) 27, 82, 135, 175, 293
CviKI_1 RGCY 5 cut(s) 27, 82, 135, 175, 293
CviQI GTAC 1 cut(s) 248
DpnI GATC 6 cut(s) 129, 192, 231, 243, 267, 354
DpnII GATC 6 cut(s) 127, 190, 229, 241, 265, 352
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 25
EciI GGCGGA 2 cut(s) 95, 158
Eco130I CCWWGG 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 3 cut(s) 94, 184, 340
EcoO109I RGGNCCY 2 cut(s) 81, 340
EcoRII CCWGG 2 cut(s) 83, 135
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 5 cut(s) 122, 134, 242, 254, 366
FaiI YATR 7 cut(s) 30, 32, 120, 132, 240, 252, 364
FaqI GGGAC 3 cut(s) 80, 170, 326
FatI CATG 5 cut(s) 118, 130, 238, 250, 362
FauNDI CATATG 1 cut(s) 30
FbaI TGATCA 1 cut(s) 241
FokI GGATG 2 cut(s) 45, 61
FriOI GRGCYC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 3 cut(s) 27, 82, 135
HapII CCGG 2 cut(s) 182, 290
Hin1II CATG 5 cut(s) 122, 134, 242, 254, 366
HpaII CCGG 2 cut(s) 182, 290
HphI GGTGA 2 cut(s) 65, 314
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 3 cut(s) 125, 155, 239
HpyAV CCTTC 2 cut(s) 108, 210
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4V TGCA 2 cut(s) 164, 299
Hsp92II CATG 5 cut(s) 122, 134, 242, 254, 366
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 6 cut(s) 127, 190, 229, 241, 265, 352
LmnI GCTCC 3 cut(s) 120, 127, 202
LweI GCATC 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 302, 331
MalI GATC 6 cut(s) 129, 192, 231, 243, 267, 354
MbiI CCGCTC 1 cut(s) 115
MboI GATC 6 cut(s) 127, 190, 229, 241, 265, 352
MboII GAAGA 1 cut(s) 347
MhlI GDGCHC 1 cut(s) 84
MlsI TGGCCA 1 cut(s) 27
MluCI AATT 1 cut(s) 148
MluNI TGGCCA 1 cut(s) 27
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 3 cut(s) 63, 246, 310
Mox20I TGGCCA 1 cut(s) 27
MscI TGGCCA 1 cut(s) 27
Msp20I TGGCCA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 2 cut(s) 182, 290
MspR9I CCNGG 2 cut(s) 85, 137
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 2 cut(s) 85, 137
NdeI CATATG 1 cut(s) 30
NdeII GATC 6 cut(s) 127, 190, 229, 241, 265, 352
NlaIII CATG 5 cut(s) 122, 134, 242, 254, 366
NlaIV GGNNCC 4 cut(s) 82, 96, 186, 342
NmuCI GTSAC 2 cut(s) 302, 331
NspI RCATGY 1 cut(s) 254
PagI TCATGA 1 cut(s) 238
PaqCI CACCTGC 1 cut(s) 290
PciI ACATGT 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 52
PctI GAATGC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 131
PpuMI RGGWCCY 1 cut(s) 340
PscI ACATGT 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 340
Psp6I CCWGG 2 cut(s) 83, 135
PspGI CCWGG 2 cut(s) 83, 135
PspN4I GGNNCC 4 cut(s) 82, 96, 186, 342
PspOMI GGGCCC 1 cut(s) 80
PspPI GGNCC 5 cut(s) 80, 81, 94, 184, 340
PspPPI RGGWCCY 1 cut(s) 340
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
Sau3AI GATC 6 cut(s) 127, 190, 229, 241, 265, 352
Sau96I GGNCC 5 cut(s) 80, 81, 94, 184, 340
ScrFI CCNGG 2 cut(s) 85, 137
SduI GDGCHC 1 cut(s) 84
SetI ASST 7 cut(s) 78, 249, 262, 304, 315, 321, 342
SfaNI GCATC 1 cut(s) 39
SinI GGWCC 3 cut(s) 94, 184, 340
Sse9I AATT 1 cut(s) 148
SsiI CCGC 5 cut(s) 10, 92, 106, 113, 169
StyD4I CCNGG 2 cut(s) 83, 135
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 315
TasI AATT 1 cut(s) 148
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 2 cut(s) 302, 331
Tsp45I GTSAC 2 cut(s) 302, 331
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 131
VpaK11BI GGWCC 3 cut(s) 94, 184, 340
XceI RCATGY 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.