Rh6AG253300

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010631
Physical Location & Seq
Reverse (-)
44294106 .. 44295083
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG253300.1

Sequence Viewer

Length: 792 bp
ATGGTAGACGCCCCTAGCTCCCCACATTCTCCCCCGGTTGATGAGCAGCATGGAGAGCTCTTTCTCCATTTACGTCTGCCAGAACCCGACCCTGCTGTTGGTACCCAGCTGGTTGGGTATCTCATCTCTGATCGTAGTCATAACCCACAGGCGGTCATCCGTATCCTTACACAGGCCTGGGCTACGATAGGTCGTTTCCACTTGCAACTTATCAGGGGCAACGATGTCTTCTCTATTGCTGCTTCCTCAGCTGCTGCTGCTGACCAGCTTCTTGAGCACGGACCCTGGTCGGTGATGGGTTGTAGTTTTACTATCCATCCTTGGCCCACTCATAGTCGCTTGGAGGACATCCCACTTCACTTCATTACTTTTTGGGTCCAAGTTCATGGTCTCACTCTTGGTTTGATGACTTGGGATAATGCTTTCTGGATTGGCTCTCAAATTGGTAGTGTTCTTGAGGTGGATGATCCTCAGATGCCTCGTCATCCGTCTGCCCATCACCTTGGGCCCTGGTTAGCTATCCCTTCTCTCCGCAGGCCTCCCTATGATCAAGACCATGGACTGGATATTGGTAATCCTCGTGGAATTGGATTACAACGGCCTTTGCCAGTTCCTGATCATGCTTCTGATTTGCCAAATGGAAGGAACTTGGTTGTTCTTGCTCACGATCAGGTACATGTTTTACCTACTGGCACACAGATTGTTCAGGGTGTTCCAGGTGTTGCAGGTGACATTCAGGTTAATGTTATTCCTTATGTCACGCCATCCCCTGCCCTTGACCTACCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

263

Amino Acids

28.71

Weight (kDa)

5.68

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 37 - 113 3.2e-08 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 716
Acc36I ACCTGC 1 cut(s) 716
Acc65I GGTACC 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 562
AccI GTMKAC 1 cut(s) 6
AciI CCGC 2 cut(s) 152, 532
AclWI GGATC 1 cut(s) 461
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 2 cut(s) 103, 675
AfiI CCNNNNNNNGG 4 cut(s) 98, 151, 172, 562
AflIII ACRYGT 1 cut(s) 676
AjnI CCWGG 4 cut(s) 176, 284, 509, 715
AluBI AGCT 6 cut(s) 18, 58, 109, 251, 268, 518
AluI AGCT 6 cut(s) 18, 58, 109, 251, 268, 518
Alw21I GWGCWC 2 cut(s) 60, 279
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 1 cut(s) 461
AlwNI CAGNNNCTG 2 cut(s) 254, 614
AoxI GGCC 5 cut(s) 174, 323, 506, 536, 599
ApaI GGGCCC 1 cut(s) 510
ApeKI GCWGC 5 cut(s) 46, 239, 251, 254, 257
Asp718I GGTACC 1 cut(s) 101
AspS9I GGNCC 5 cut(s) 281, 324, 376, 506, 507
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 3 cut(s) 304, 491, 740
AvaII GGWCC 2 cut(s) 281, 376
BaeGI GKGCMC 1 cut(s) 510
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 2 cut(s) 60, 510
BauI CACGAG 1 cut(s) 579
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 2 cut(s) 60, 279
BbvCI CCTCAGC 1 cut(s) 247
BbvI GCAGC 5 cut(s) 58, 226, 238, 241, 244
BccI CCATC 4 cut(s) 289, 324, 504, 772
BceAI ACGGC 1 cut(s) 614
BciT130I CCWGG 4 cut(s) 178, 286, 511, 717
BciVI GTATCC 1 cut(s) 173
BclI TGATCA 2 cut(s) 547, 616
BcnI CCSGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 716
BfuI GTATCC 1 cut(s) 173
BisI GCNGC 5 cut(s) 47, 240, 252, 255, 258
BlsI GCNGC 5 cut(s) 48, 241, 253, 256, 259
Bme1390I CCNGG 5 cut(s) 35, 178, 286, 511, 717
Bme18I GGWCC 2 cut(s) 281, 376
BmgT120I GGNCC 5 cut(s) 281, 324, 376, 506, 507
BmiI GGNNCC 4 cut(s) 103, 283, 377, 508
BmrFI CCNGG 5 cut(s) 35, 178, 286, 511, 717
BmsI GCATC 1 cut(s) 465
BoxI GACNNNNGTC 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 220
Bpu10I CCTNAGC 1 cut(s) 247
BpuEI CTTGAG 2 cut(s) 293, 476
BpuMI CCSGG 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 7 cut(s) 33, 177, 284, 320, 502, 509, 556
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 151, 172, 562
Bse1I ACTGG 3 cut(s) 567, 608, 694
BseBI CCWGG 4 cut(s) 178, 286, 511, 717
BseDI CCNNGG 7 cut(s) 33, 177, 284, 320, 502, 509, 556
BseGI GGATG 6 cut(s) 156, 316, 348, 469, 484, 764
BseLI CCNNNNNNNGG 4 cut(s) 98, 151, 172, 562
BseMII CTCAG 2 cut(s) 261, 485
BseNI ACTGG 3 cut(s) 567, 608, 694
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 5 cut(s) 58, 226, 238, 241, 244
BseYI CCCAGC 1 cut(s) 105
BshFI GGCC 5 cut(s) 176, 325, 508, 538, 601
BshNI GGYRCC 1 cut(s) 101
BsiHKAI GWGCWC 2 cut(s) 60, 279
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 4 cut(s) 98, 151, 172, 562
BsmAI GTCTC 1 cut(s) 395
BsnI GGCC 5 cut(s) 176, 325, 508, 538, 601
Bso31I GGTCTC 1 cut(s) 395
Bsp120I GGGCCC 1 cut(s) 506
Bsp1286I GDGCHC 3 cut(s) 60, 279, 510
Bsp143I GATC 5 cut(s) 130, 466, 547, 616, 667
Bsp19I CCATGG 1 cut(s) 556
BspACI CCGC 2 cut(s) 152, 532
BspANI GGCC 5 cut(s) 176, 325, 508, 538, 601
BspCNI CTCAG 2 cut(s) 260, 484
BspLI GGNNCC 4 cut(s) 103, 283, 377, 508
BspMI ACCTGC 1 cut(s) 716
BspPI GGATC 1 cut(s) 461
BspT107I GGYRCC 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 395
BsrI ACTGG 3 cut(s) 567, 608, 694
BssECI CCNNGG 7 cut(s) 33, 177, 284, 320, 502, 509, 556
BssMI GATC 5 cut(s) 130, 466, 547, 616, 667
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 579
BssT1I CCWWGG 3 cut(s) 320, 502, 556
Bst2BI CACGAG 1 cut(s) 579
Bst2UI CCWGG 4 cut(s) 178, 286, 511, 717
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 536
BstDEI CTNAG 2 cut(s) 247, 471
BstDSI CCRYGG 1 cut(s) 556
BstENI CCTNNNNNAGG 1 cut(s) 170
BstF5I GGATG 6 cut(s) 156, 316, 348, 469, 484, 764
BstKTI GATC 5 cut(s) 133, 469, 550, 619, 670
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 5 cut(s) 130, 466, 547, 616, 667
BstMWI GCNNNNNNNGC 4 cut(s) 55, 248, 257, 274
BstNI CCWGG 4 cut(s) 178, 286, 511, 717
BstNSI RCATGY 1 cut(s) 680
BstPAI GACNNNNGTC 1 cut(s) 286
BstSCI CCNGG 5 cut(s) 33, 176, 284, 509, 715
BstSLI GKGCMC 1 cut(s) 510
BstV1I GCAGC 5 cut(s) 58, 226, 238, 241, 244
BstV2I GAAGAC 1 cut(s) 220
BstXI CCANNNNNNTGG 3 cut(s) 113, 386, 503
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 5 cut(s) 176, 325, 508, 538, 601
BtgI CCRYGG 1 cut(s) 556
BtsCI GGATG 6 cut(s) 156, 316, 348, 469, 484, 764
BveI ACCTGC 1 cut(s) 716
Cac8I GCNNGC 1 cut(s) 536
CaiI CAGNNNCTG 2 cut(s) 254, 614
Cfr13I GGNCC 5 cut(s) 281, 324, 376, 506, 507
CseI GACGC 1 cut(s) 17
Csp6I GTAC 2 cut(s) 102, 674
CviAII CATG 5 cut(s) 50, 386, 557, 620, 677
CviQI GTAC 2 cut(s) 102, 674
DdeI CTNAG 2 cut(s) 247, 471
DpnI GATC 5 cut(s) 132, 468, 549, 618, 669
DpnII GATC 5 cut(s) 130, 466, 547, 616, 667
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 3 cut(s) 320, 502, 556
Eco147I AGGCCT 2 cut(s) 176, 538
Eco24I GRGCYC 2 cut(s) 60, 510
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 2 cut(s) 281, 376
Eco53kI GAGCTC 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 58
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 507
EcoRII CCWGG 4 cut(s) 176, 284, 509, 715
EcoT14I CCWWGG 3 cut(s) 320, 502, 556
EcoT38I GRGCYC 2 cut(s) 60, 510
ErhI CCWWGG 3 cut(s) 320, 502, 556
FaeI CATG 5 cut(s) 53, 389, 560, 623, 680
FatI CATG 5 cut(s) 49, 385, 556, 619, 676
FbaI TGATCA 2 cut(s) 547, 616
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 5 cut(s) 47, 240, 252, 255, 258
FokI GGATG 6 cut(s) 143, 303, 335, 471, 476, 751
FriOI GRGCYC 2 cut(s) 60, 510
Fsp4HI GCNGC 5 cut(s) 47, 240, 252, 255, 258
FspBI CTAG 1 cut(s) 15
GluI GCNGC 5 cut(s) 47, 240, 252, 255, 258
GsaI CCCAGC 1 cut(s) 109
HaeIII GGCC 5 cut(s) 176, 325, 508, 538, 601
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 5 cut(s) 53, 389, 560, 623, 680
HpaII CCGG 1 cut(s) 35
HphI GGTGA 3 cut(s) 304, 491, 740
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 3 cut(s) 130, 474, 628
Hpy188III TCNNGA 6 cut(s) 272, 427, 455, 551, 614, 665
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 2 cut(s) 534, 636
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 205, 725
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 248, 257, 274
HpyF3I CTNAG 2 cut(s) 247, 471
HpySE526I ACGT 1 cut(s) 73
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 5 cut(s) 53, 389, 560, 623, 680
KpnI GGTACC 1 cut(s) 105
Ksp22I TGATCA 2 cut(s) 547, 616
Kzo9I GATC 5 cut(s) 130, 466, 547, 616, 667
LmnI GCTCC 1 cut(s) 23
Lsp1109I GCAGC 5 cut(s) 58, 226, 238, 241, 244
LweI GCATC 1 cut(s) 465
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 2 cut(s) 728, 757
MalI GATC 5 cut(s) 132, 468, 549, 618, 669
MboI GATC 5 cut(s) 130, 466, 547, 616, 667
MboII GAAGA 1 cut(s) 220
MhlI GDGCHC 3 cut(s) 60, 279, 510
MluCI AATT 2 cut(s) 441, 585
MnlI CCTC 7 cut(s) 256, 337, 451, 480, 489, 549, 588
MseI TTAA 1 cut(s) 741
MspA1I CMGCKG 2 cut(s) 109, 251
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 5 cut(s) 35, 178, 286, 511, 717
MvaI CCWGG 4 cut(s) 178, 286, 511, 717
MwoI GCNNNNNNNGC 4 cut(s) 55, 248, 257, 274
NciI CCSGG 1 cut(s) 35
NcoI CCATGG 1 cut(s) 556
NdeII GATC 5 cut(s) 130, 466, 547, 616, 667
NlaIII CATG 5 cut(s) 53, 389, 560, 623, 680
NlaIV GGNNCC 4 cut(s) 103, 283, 377, 508
NmuCI GTSAC 2 cut(s) 728, 757
NspI RCATGY 1 cut(s) 680
PaqCI CACCTGC 1 cut(s) 716
PceI AGGCCT 2 cut(s) 176, 538
PciI ACATGT 1 cut(s) 676
PflMI CCANNNNNTGG 1 cut(s) 562
PkrI GCNGC 5 cut(s) 48, 241, 253, 256, 259
PscI ACATGT 1 cut(s) 676
PshAI GACNNNNGTC 1 cut(s) 286
Psp124BI GAGCTC 1 cut(s) 60
Psp6I CCWGG 4 cut(s) 176, 284, 509, 715
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 4 cut(s) 176, 284, 509, 715
PspN4I GGNNCC 4 cut(s) 103, 283, 377, 508
PspOMI GGGCCC 1 cut(s) 506
PspPI GGNCC 5 cut(s) 281, 324, 376, 506, 507
PstNI CAGNNNCTG 2 cut(s) 254, 614
PvuII CAGCTG 2 cut(s) 109, 251
RsaI GTAC 2 cut(s) 103, 675
RsaNI GTAC 2 cut(s) 102, 674
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 5 cut(s) 47, 240, 252, 255, 258
Sau3AI GATC 5 cut(s) 130, 466, 547, 616, 667
Sau96I GGNCC 5 cut(s) 281, 324, 376, 506, 507
ScrFI CCNGG 5 cut(s) 35, 178, 286, 511, 717
SduI GDGCHC 3 cut(s) 60, 279, 510
SfaNI GCATC 1 cut(s) 465
SinI GGWCC 2 cut(s) 281, 376
SmlI CTYRAG 2 cut(s) 272, 455
SmoI CTYRAG 2 cut(s) 272, 455
Sse9I AATT 2 cut(s) 441, 585
SseBI AGGCCT 2 cut(s) 176, 538
SsiI CCGC 2 cut(s) 152, 532
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 60
StuI AGGCCT 2 cut(s) 176, 538
StyD4I CCNGG 5 cut(s) 33, 176, 284, 509, 715
StyI CCWWGG 3 cut(s) 320, 502, 556
TaiI ACGT 1 cut(s) 76
TasI AATT 2 cut(s) 441, 585
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TseFI GTSAC 2 cut(s) 728, 757
TseI GCWGC 5 cut(s) 46, 239, 251, 254, 257
Tsp45I GTSAC 2 cut(s) 728, 757
TspDTI ATGAA 2 cut(s) 352, 374
TspGWI ACGGA 3 cut(s) 149, 294, 477
Van91I CCANNNNNTGG 1 cut(s) 562
VpaK11BI GGWCC 2 cut(s) 281, 376
XagI CCTNNNNNAGG 1 cut(s) 170
XceI RCATGY 1 cut(s) 680
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.