Rh2BG459300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010631
Physical Location & Seq
Reverse (-)
64965614 .. 64968131
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG459300.1

Sequence Viewer

Length: 492 bp
ATGGTAGACGCCCCTCCCTCCCCACATTCTCCCCTTGCGGATGAGCAACATGGAGAGCTCTTTCTCCATTTACGTCCGCCAGAACCTGACCCTGCTTATGGTACCCAGCTGGTTGGGTTTCCCATCTATGATCGTAGTTATAACCCACAGGCGGTAATTCGCATCCTTACACAGGCCTGGGCTGCGATCGGTCGTTTCCACTTGCAACTTATATGGGGAAACAATGTCTTCTCTATTGCTGCTTCCTCAGCTTCTGCTGTTGACCAGCTTCTTGTACTAATCACAAGCGGAGTTACCTCAAACCCAGCTGCTAGCTCTGGGAATAGAGAAACCTTGGAACTCTCCTTCTGCCAAAATGGTATCTCTCTAGATTCCATGCATGAGAGATGTGCCACTAGAGGCAAGAAGAAGGTGTGGAGAAAGAATCGAAAATCTTTGTTTACGTTTGAGAAATATTCCTCCTTCTTTGTCTCTCCTACCGAAACATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.06

Weight (kDa)

7.84

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
Acc65I GGTACC 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 6
AciI CCGC 4 cut(s) 38, 77, 152, 288
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 2 cut(s) 103, 276
AfiI CCNNNNNNNGG 3 cut(s) 98, 151, 172
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 6 cut(s) 58, 109, 251, 268, 308, 315
AluI AGCT 6 cut(s) 58, 109, 251, 268, 308, 315
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 475
AlwNI CAGNNNCTG 2 cut(s) 86, 254
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 3 cut(s) 182, 239, 308
Asp718I GGTACC 1 cut(s) 101
AsuNHI GCTAGC 1 cut(s) 311
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 60
BbvCI CCTCAGC 1 cut(s) 247
BbvI GCAGC 3 cut(s) 169, 226, 295
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 475
BfaI CTAG 3 cut(s) 312, 368, 396
BisI GCNGC 3 cut(s) 183, 240, 309
BlsI GCNGC 3 cut(s) 184, 241, 310
Bme1390I CCNGG 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 171
BmtI GCTAGC 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 220
Bpu10I CCTNAGC 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 177, 333
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 151, 172
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 2 cut(s) 177, 333
BseGI GGATG 2 cut(s) 46, 162
BseLI CCNNNNNNNGG 3 cut(s) 98, 151, 172
BseMII CTCAG 1 cut(s) 261
BseXI GCAGC 3 cut(s) 169, 226, 295
BseYI CCCAGC 2 cut(s) 105, 304
Bsh1285I CGRYCG 2 cut(s) 189, 193
BshFI GGCC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 101
BsiEI CGRYCG 2 cut(s) 189, 193
BsiHKAI GWGCWC 1 cut(s) 60
BslI CCNNNNNNNGG 3 cut(s) 98, 151, 172
BsmAI GTCTC 1 cut(s) 475
BsnI GGCC 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 130, 186
BspACI CCGC 4 cut(s) 38, 77, 152, 288
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 103
BspOI GCTAGC 1 cut(s) 315
BspT107I GGYRCC 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 177, 333
BssMI GATC 2 cut(s) 130, 186
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 178
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 247
BstENI CCTNNNNNAGG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 46, 162
BstKTI GATC 2 cut(s) 133, 189
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 2 cut(s) 130, 186
BstMCI CGRYCG 2 cut(s) 189, 193
BstMWI GCNNNNNNNGC 2 cut(s) 182, 248
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 176
BstV1I GCAGC 3 cut(s) 169, 226, 295
BstV2I GAAGAC 1 cut(s) 220
BstXI CCANNNNNNTGG 1 cut(s) 113
BsuRI GGCC 1 cut(s) 176
BtsCI GGATG 2 cut(s) 46, 162
Cac8I GCNNGC 1 cut(s) 313
CaiI CAGNNNCTG 2 cut(s) 86, 254
CseI GACGC 1 cut(s) 17
Csp6I GTAC 2 cut(s) 102, 275
CviAII CATG 3 cut(s) 50, 376, 380
CviJI RGCY 8 cut(s) 58, 109, 176, 182, 251, 268, 308, 315
CviKI_1 RGCY 8 cut(s) 58, 109, 176, 182, 251, 268, 308, 315
CviQI GTAC 2 cut(s) 102, 275
DdeI CTNAG 1 cut(s) 247
DpnI GATC 2 cut(s) 132, 188
DpnII GATC 2 cut(s) 130, 186
EciI GGCGGA 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 333
Eco147I AGGCCT 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 58
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 381
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 3 cut(s) 53, 379, 383
FaiI YATR 9 cut(s) 51, 99, 129, 141, 212, 214, 377, 381, 490
FatI CATG 3 cut(s) 49, 375, 379
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 3 cut(s) 183, 240, 309
FokI GGATG 2 cut(s) 53, 149
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 3 cut(s) 183, 240, 309
FspBI CTAG 3 cut(s) 312, 368, 396
GluI GCNGC 3 cut(s) 183, 240, 309
GsaI CCCAGC 2 cut(s) 109, 308
HaeIII GGCC 1 cut(s) 176
HgaI GACGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 3 cut(s) 53, 379, 383
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 2 cut(s) 371, 424
Hpy166II GTNNAC 3 cut(s) 7, 262, 441
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 3 cut(s) 7, 262, 441
HpyAV CCTTC 3 cut(s) 355, 403, 472
HpyCH4IV ACGT 2 cut(s) 73, 443
HpyCH4V TGCA 2 cut(s) 205, 379
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 248
HpyF3I CTNAG 1 cut(s) 247
HpySE526I ACGT 2 cut(s) 73, 443
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 3 cut(s) 53, 379, 383
KpnI GGTACC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 130, 186
Lsp1109I GCAGC 3 cut(s) 169, 226, 295
LweI GCATC 1 cut(s) 171
MaeI CTAG 3 cut(s) 312, 368, 396
MaeII ACGT 2 cut(s) 73, 443
MaeIII GTNAC 1 cut(s) 292
MalI GATC 2 cut(s) 132, 188
MboI GATC 2 cut(s) 130, 186
MboII GAAGA 2 cut(s) 220, 418
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 1 cut(s) 156
MnlI CCTC 6 cut(s) 24, 28, 256, 307, 392, 469
Mph1103I ATGCAT 1 cut(s) 381
MspA1I CMGCKG 2 cut(s) 109, 308
MspR9I CCNGG 1 cut(s) 178
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 182, 248
NdeII GATC 2 cut(s) 130, 186
NheI GCTAGC 1 cut(s) 311
NlaIII CATG 3 cut(s) 53, 379, 383
NlaIV GGNNCC 1 cut(s) 103
NsiI ATGCAT 1 cut(s) 381
PceI AGGCCT 1 cut(s) 176
PfeI GAWTC 2 cut(s) 371, 424
PkrI GCNGC 3 cut(s) 184, 241, 310
Ple19I CGATCG 1 cut(s) 189
PsiI TTATAA 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 176
PspFI CCCAGC 2 cut(s) 105, 304
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 103
PstNI CAGNNNCTG 2 cut(s) 86, 254
PvuI CGATCG 1 cut(s) 189
PvuII CAGCTG 2 cut(s) 109, 308
RsaI GTAC 2 cut(s) 103, 276
RsaNI GTAC 2 cut(s) 102, 275
SacI GAGCTC 1 cut(s) 60
SatI GCNGC 3 cut(s) 183, 240, 309
Sau3AI GATC 2 cut(s) 130, 186
ScrFI CCNGG 1 cut(s) 178
SduI GDGCHC 1 cut(s) 60
SfaNI GCATC 1 cut(s) 171
Sse9I AATT 1 cut(s) 156
SseBI AGGCCT 1 cut(s) 176
SsiI CCGC 4 cut(s) 38, 77, 152, 288
SspI AATATT 1 cut(s) 455
SspMI CTAG 3 cut(s) 312, 368, 396
SstI GAGCTC 1 cut(s) 60
StuI AGGCCT 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 176
StyI CCWWGG 1 cut(s) 333
TaiI ACGT 2 cut(s) 76, 446
TaqI TCGA 1 cut(s) 427
TaqII GACCGA 1 cut(s) 179
TasI AATT 1 cut(s) 156
TatI WGTACW 1 cut(s) 274
TfiI GAWTC 2 cut(s) 371, 424
TseI GCWGC 3 cut(s) 182, 239, 308
XagI CCTNNNNNAGG 1 cut(s) 170
XbaI TCTAGA 1 cut(s) 367
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 3 cut(s) 312, 368, 396
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.