Rw0G013180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00591
OG0010631
Physical Location & Seq
Forward (+)
8641 .. 9957
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013180.1

Sequence Viewer

Length: 1104 bp
ATGTGTTTCCACTGTGGTCGTCTTGGCCATATGCTTTCACTATGCCAGATGCCTCGTCATCCGTCTGCCCACCACCTTGGGCCCTGGTTAGCCGTCCCTTCTCTCCGCCAGCCTCTCCATGATCCAGATCATGGACTGGATATTGGTAATCCTCATGATATTGCAGTATGCCAGCCCTTGCATGTCCCTGATCCTGCTCCTGGTCTGCAAATGGAAAGAACTTGGCTGTTTTTGCTCATGATCAGTTGCAGGGACCTTCAGGTCGATGTTATTCCCTGTGTCACGCAGTCCCTTGACCTTGATCTACCTCCACATACTGGTGATGTTAGCTGGAATCCGTTGCCGGTTCCAGGAACCCTAGTTTTGGCTTGTCGCTCACAAGGTCGCTGCCAGCCGCCATCTTCATCTCCTCTAATCACCATCTCCCAATCTGTCTTGTCACCTCCCATGGGGCCCTTCTCAAGCCAATCTTTAGACAAGGGCGCAAGCGCAAGCCCAAGCGCAAGCCCAAGCCATTTGATGCAGGTTGATCCGGTTTGTGAACCAGCCCTCCTTCAAGTCTTGTTGGCCCAACAGGAAGCTGTTTTGGACCCTACTCTACTTGGGCCCAACCCGGATAAGTCAATGTTTGATAATCCACCAGATCCATCTTCTCAATCAGTCCATTTTCAAGCACAGACTCAATCCCCGACCCTTCCTCCCTTCCCTTCATATCAAGCTCCGACTCATTTGGTATCCAATTCTGCTTCTCCATCATCACTTTTCCAGTCGGTTCCAGCTTTTCCTTTCTCTGGTGTTGGGGATCTCGTGCCGGGTTTCGATGTAGCCTCTCTTCCTCTTTTGGGTACCCTTGCAATTCTGGCTCACCAATTCAAACAATTGCAACTCCGGAAGAGATTACATGCGGCCCTTACTGATTCTTCGAATACTTCTAAGAAACAGAAGGTGATGGCCATTGTGGAACATCCACCTTCTCCTCTGGTGTCTGTTCCCCTTCCCCCACGACTACGTCGATCCTGTGCTTCCCCTGGTGCCGGTCGTGGTCGTCGTGGCCGACTCCGAGGTCATGGTCTTAATCTTCCACACATCCTTCTTCTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

367

Amino Acids

39.39

Weight (kDa)

7.7

Isoelectric Point (pI)

67.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 260, 1062
Acc36I ACCTGC 1 cut(s) 514
Acc65I GGTACC 1 cut(s) 845
AccB1I GGYRCC 2 cut(s) 845, 1031
AccB7I CCANNNNNTGG 2 cut(s) 131, 317
AccIII TCCGGA 1 cut(s) 888
AciI CCGC 3 cut(s) 106, 395, 905
AclWI GGATC 6 cut(s) 116, 185, 524, 638, 810, 1008
AcoI YGGCCR 3 cut(s) 25, 951, 1051
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 1 cut(s) 847
AfiI CCNNNNNNNGG 9 cut(s) 131, 200, 317, 350, 364, 449, 791, 842, 1034
AgsI TTSAA 3 cut(s) 557, 671, 874
AjnI CCWGG 4 cut(s) 83, 199, 349, 1027
AloI GAACNNNNNNTCC 2 cut(s) 534, 566
AluBI AGCT 4 cut(s) 330, 581, 719, 779
AluI AGCT 4 cut(s) 330, 581, 719, 779
AlwI GGATC 6 cut(s) 116, 185, 524, 638, 810, 1008
Aor13HI TCCGGA 1 cut(s) 888
AoxI GGCC 8 cut(s) 25, 80, 452, 567, 605, 906, 951, 1051
ApaI GGGCCC 3 cut(s) 84, 456, 609
ApeKI GCWGC 1 cut(s) 387
Asp718I GGTACC 1 cut(s) 845
AspLEI GCGC 3 cut(s) 485, 491, 503
AsuC2I CCSGG 2 cut(s) 614, 813
AsuHPI GGTGA 5 cut(s) 332, 409, 432, 857, 958
AsuII TTCGAA 1 cut(s) 923
AvaII GGWCC 2 cut(s) 253, 589
BaeGI GKGCMC 3 cut(s) 84, 456, 609
BalI TGGCCA 2 cut(s) 27, 953
BanI GGYRCC 2 cut(s) 845, 1031
BanII GRGCYC 3 cut(s) 84, 456, 609
BarI GAAGNNNNNNTAC 2 cut(s) 816, 848
BauI CACGAG 1 cut(s) 806
BbvI GCAGC 1 cut(s) 374
BccI CCATC 5 cut(s) 406, 428, 655, 760, 943
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 4 cut(s) 85, 201, 351, 1029
BciVI GTATCC 1 cut(s) 745
BclI TGATCA 1 cut(s) 240
BcnI CCSGG 2 cut(s) 614, 813
BfaI CTAG 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 514
BfuI GTATCC 1 cut(s) 745
BisI GCNGC 3 cut(s) 388, 395, 906
BlsI GCNGC 3 cut(s) 389, 396, 907
Bme1390I CCNGG 6 cut(s) 85, 201, 351, 614, 813, 1029
Bme18I GGWCC 2 cut(s) 253, 589
BmrFI CCNGG 6 cut(s) 85, 201, 351, 614, 813, 1029
BmsI GCATC 2 cut(s) 39, 510
Bpu14I TTCGAA 1 cut(s) 923
BpuEI CTTGAG 1 cut(s) 445
BpuMI CCSGG 2 cut(s) 614, 813
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 5 cut(s) 76, 83, 447, 1027, 1060
BsaWI WCCGGW 2 cut(s) 532, 888
BsaXI ACNNNNNCTCC 4 cut(s) 534, 564, 682, 712
Bsc4I CCNNNNNNNGG 9 cut(s) 131, 200, 317, 350, 364, 449, 791, 842, 1034
Bse118I RCCGGY 2 cut(s) 343, 1034
Bse1I ACTGG 3 cut(s) 141, 322, 766
Bse8I GATNNNNATC 1 cut(s) 126
BseAI TCCGGA 1 cut(s) 888
BseBI CCWGG 4 cut(s) 85, 201, 351, 1029
BseDI CCNNGG 5 cut(s) 76, 83, 447, 1027, 1060
BseGI GGATG 3 cut(s) 58, 964, 1086
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 9 cut(s) 131, 200, 317, 350, 364, 449, 791, 842, 1034
BseNI ACTGG 3 cut(s) 141, 322, 766
BseRI GAGGAG 2 cut(s) 399, 966
BseSI GKGCMC 3 cut(s) 84, 456, 609
BseXI GCAGC 1 cut(s) 374
Bsh1285I CGRYCG 1 cut(s) 1039
BshFI GGCC 8 cut(s) 27, 82, 454, 569, 607, 908, 953, 1053
BshNI GGYRCC 2 cut(s) 845, 1031
BsiEI CGRYCG 1 cut(s) 1039
BsiSI CCGG 6 cut(s) 344, 533, 614, 812, 889, 1035
BslFI GGGAC 4 cut(s) 80, 170, 266, 274
BslI CCNNNNNNNGG 9 cut(s) 131, 200, 317, 350, 364, 449, 791, 842, 1034
BsmFI GGGAC 4 cut(s) 80, 170, 266, 274
BsnI GGCC 8 cut(s) 27, 82, 454, 569, 607, 908, 953, 1053
Bsp119I TTCGAA 1 cut(s) 923
Bsp120I GGGCCC 3 cut(s) 80, 452, 605
Bsp1286I GDGCHC 3 cut(s) 84, 456, 609
Bsp13I TCCGGA 1 cut(s) 888
Bsp143I GATC 9 cut(s) 121, 127, 190, 240, 301, 529, 643, 802, 1013
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 3 cut(s) 106, 395, 905
BspANI GGCC 8 cut(s) 27, 82, 454, 569, 607, 908, 953, 1053
BspEI TCCGGA 1 cut(s) 888
BspHI TCATGA 2 cut(s) 154, 237
BspMI ACCTGC 1 cut(s) 514
BspPI GGATC 6 cut(s) 116, 185, 524, 638, 810, 1008
BspT104I TTCGAA 1 cut(s) 923
BspT107I GGYRCC 2 cut(s) 845, 1031
BsrFI RCCGGY 2 cut(s) 343, 1034
BsrI ACTGG 3 cut(s) 141, 322, 766
BssAI RCCGGY 2 cut(s) 343, 1034
BssECI CCNNGG 5 cut(s) 76, 83, 447, 1027, 1060
BssMI GATC 9 cut(s) 121, 127, 190, 240, 301, 529, 643, 802, 1013
BssSI CACGAG 1 cut(s) 806
BssT1I CCWWGG 2 cut(s) 76, 447
Bst2BI CACGAG 1 cut(s) 806
Bst2UI CCWGG 4 cut(s) 85, 201, 351, 1029
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 2 cut(s) 837, 887
BstBI TTCGAA 1 cut(s) 923
BstC8I GCNNGC 6 cut(s) 110, 173, 392, 487, 493, 505
BstDEI CTNAG 1 cut(s) 933
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 3 cut(s) 58, 964, 1086
BstHHI GCGC 3 cut(s) 485, 491, 503
BstKTI GATC 9 cut(s) 124, 130, 193, 243, 304, 532, 646, 805, 1016
BstMBI GATC 9 cut(s) 121, 127, 190, 240, 301, 529, 643, 802, 1013
BstMCI CGRYCG 1 cut(s) 1039
BstMWI GCNNNNNNNGC 2 cut(s) 232, 860
BstNI CCWGG 4 cut(s) 85, 201, 351, 1029
BstNSI RCATGY 2 cut(s) 185, 905
BstSCI CCNGG 6 cut(s) 83, 199, 349, 612, 811, 1027
BstSLI GKGCMC 3 cut(s) 84, 456, 609
BstV1I GCAGC 1 cut(s) 374
BstX2I RGATCY 2 cut(s) 643, 802
BstXI CCANNNNNNTGG 1 cut(s) 77
BstYI RGATCY 2 cut(s) 643, 802
BsuI GTATCC 1 cut(s) 745
BsuRI GGCC 8 cut(s) 27, 82, 454, 569, 607, 908, 953, 1053
BtgI CCRYGG 1 cut(s) 447
BtsCI GGATG 3 cut(s) 58, 964, 1086
BtsIMutI CAGTG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 6 cut(s) 110, 173, 392, 487, 493, 505
CciI TCATGA 2 cut(s) 154, 237
CfoI GCGC 3 cut(s) 485, 491, 503
Cfr10I RCCGGY 2 cut(s) 343, 1034
Csp6I GTAC 1 cut(s) 846
CviAII CATG 8 cut(s) 119, 131, 155, 182, 238, 448, 902, 1067
CviQI GTAC 1 cut(s) 846
DdeI CTNAG 1 cut(s) 933
DpnI GATC 9 cut(s) 123, 129, 192, 242, 303, 531, 645, 804, 1015
DpnII GATC 9 cut(s) 121, 127, 190, 240, 301, 529, 643, 802, 1013
DrdI GACNNNNNNGTC 2 cut(s) 260, 1062
DseDI GACNNNNNNGTC 2 cut(s) 260, 1062
EaeI YGGCCR 3 cut(s) 25, 951, 1051
Eam1104I CTCTTC 2 cut(s) 837, 887
EarI CTCTTC 2 cut(s) 837, 887
EciI GGCGGA 1 cut(s) 95
Eco130I CCWWGG 2 cut(s) 76, 447
Eco24I GRGCYC 3 cut(s) 84, 456, 609
Eco47I GGWCC 2 cut(s) 253, 589
Eco57I CTGAAG 1 cut(s) 242
EcoO109I RGGNCCY 4 cut(s) 81, 253, 452, 453
EcoRII CCWGG 4 cut(s) 83, 199, 349, 1027
EcoT14I CCWWGG 2 cut(s) 76, 447
EcoT38I GRGCYC 3 cut(s) 84, 456, 609
ErhI CCWWGG 2 cut(s) 76, 447
FaeI CATG 8 cut(s) 122, 134, 158, 185, 241, 451, 905, 1070
FalI AAGNNNNNCTT 2 cut(s) 454, 486
FaqI GGGAC 4 cut(s) 80, 170, 266, 274
FatI CATG 8 cut(s) 118, 130, 154, 181, 237, 447, 901, 1066
FauNDI CATATG 1 cut(s) 30
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 388, 395, 906
FokI GGATG 3 cut(s) 45, 951, 1073
FriOI GRGCYC 3 cut(s) 84, 456, 609
Fsp4HI GCNGC 3 cut(s) 388, 395, 906
FspBI CTAG 1 cut(s) 359
GlaI GCGC 3 cut(s) 484, 490, 502
GluI GCNGC 3 cut(s) 388, 395, 906
HaeIII GGCC 8 cut(s) 27, 82, 454, 569, 607, 908, 953, 1053
HapII CCGG 6 cut(s) 344, 533, 614, 812, 889, 1035
HhaI GCGC 3 cut(s) 485, 491, 503
Hin1II CATG 8 cut(s) 122, 134, 158, 185, 241, 451, 905, 1070
Hin6I GCGC 3 cut(s) 483, 489, 501
HinP1I GCGC 3 cut(s) 483, 489, 501
HinfI GANTC 5 cut(s) 334, 679, 724, 917, 1056
HpaII CCGG 6 cut(s) 344, 533, 614, 812, 889, 1035
HphI GGTGA 5 cut(s) 332, 409, 432, 857, 958
Hpy166II GTNNAC 1 cut(s) 542
Hpy188I TCNGA 2 cut(s) 723, 1061
Hpy188III TCNNGA 4 cut(s) 125, 155, 238, 889
Hpy8I GTNNAC 1 cut(s) 542
Hpy99I CGWCG 2 cut(s) 1014, 1050
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 1009
HpyCH4V TGCA 7 cut(s) 164, 181, 208, 249, 523, 854, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 860
HpyF3I CTNAG 1 cut(s) 933
HpySE526I ACGT 1 cut(s) 1009
Hsp92II CATG 8 cut(s) 122, 134, 158, 185, 241, 451, 905, 1070
HspAI GCGC 3 cut(s) 483, 489, 501
Kpn2I TCCGGA 1 cut(s) 888
KpnI GGTACC 1 cut(s) 849
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 9 cut(s) 121, 127, 190, 240, 301, 529, 643, 802, 1013
LmnI GCTCC 2 cut(s) 202, 724
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 2 cut(s) 39, 510
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 1009
MaeIII GTNAC 2 cut(s) 280, 438
MalI GATC 9 cut(s) 123, 129, 192, 242, 303, 531, 645, 804, 1015
MboI GATC 9 cut(s) 121, 127, 190, 240, 301, 529, 643, 802, 1013
MboII GAAGA 7 cut(s) 393, 642, 824, 904, 912, 1070, 1085
MfeI CAATTG 1 cut(s) 878
MflI RGATCY 2 cut(s) 643, 802
MhlI GDGCHC 3 cut(s) 84, 456, 609
MlsI TGGCCA 2 cut(s) 27, 953
MluCI AATT 4 cut(s) 739, 855, 869, 878
MluNI TGGCCA 2 cut(s) 27, 953
MlyI GAGTC 3 cut(s) 673, 718, 1050
MmeI TCCRAC 1 cut(s) 746
Mox20I TGGCCA 2 cut(s) 27, 953
MroI TCCGGA 1 cut(s) 888
MscI TGGCCA 2 cut(s) 27, 953
MseI TTAA 1 cut(s) 1074
MslI CAYNNNNRTG 1 cut(s) 318
Msp20I TGGCCA 2 cut(s) 27, 953
MspI CCGG 6 cut(s) 344, 533, 614, 812, 889, 1035
MspR9I CCNGG 6 cut(s) 85, 201, 351, 614, 813, 1029
MunI CAATTG 1 cut(s) 878
MvaI CCWGG 4 cut(s) 85, 201, 351, 1029
MwoI GCNNNNNNNGC 2 cut(s) 232, 860
NciI CCSGG 2 cut(s) 614, 813
NcoI CCATGG 1 cut(s) 447
NdeI CATATG 1 cut(s) 30
NdeII GATC 9 cut(s) 121, 127, 190, 240, 301, 529, 643, 802, 1013
NlaIII CATG 8 cut(s) 122, 134, 158, 185, 241, 451, 905, 1070
NmuCI GTSAC 2 cut(s) 280, 438
NspI RCATGY 2 cut(s) 185, 905
NspV TTCGAA 1 cut(s) 923
PagI TCATGA 2 cut(s) 154, 237
PcsI WCGNNNNNNNCGW 3 cut(s) 1009, 1045, 1051
PfeI GAWTC 2 cut(s) 334, 917
PflFI GACNNNGTC 1 cut(s) 1008
PflMI CCANNNNNTGG 2 cut(s) 131, 317
PfoI TCCNGGA 1 cut(s) 349
PkrI GCNGC 3 cut(s) 389, 396, 907
PleI GAGTC 3 cut(s) 673, 718, 1050
PpsI GAGTC 3 cut(s) 673, 718, 1050
PpuMI RGGWCCY 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 4 cut(s) 83, 199, 349, 1027
PspGI CCWGG 4 cut(s) 83, 199, 349, 1027
PspOMI GGGCCC 3 cut(s) 80, 452, 605
PspPPI RGGWCCY 1 cut(s) 253
PsuI RGATCY 2 cut(s) 643, 802
PsyI GACNNNGTC 1 cut(s) 1008
RsaI GTAC 1 cut(s) 847
RsaNI GTAC 1 cut(s) 846
RseI CAYNNNNRTG 1 cut(s) 318
SaqAI TTAA 1 cut(s) 1074
SatI GCNGC 3 cut(s) 388, 395, 906
Sau3AI GATC 9 cut(s) 121, 127, 190, 240, 301, 529, 643, 802, 1013
SchI GAGTC 3 cut(s) 673, 718, 1050
ScrFI CCNGG 6 cut(s) 85, 201, 351, 614, 813, 1029
SduI GDGCHC 3 cut(s) 84, 456, 609
SfaNI GCATC 2 cut(s) 39, 510
SfuI TTCGAA 1 cut(s) 923
SinI GGWCC 2 cut(s) 253, 589
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
Sse9I AATT 4 cut(s) 739, 855, 869, 878
SsiI CCGC 3 cut(s) 106, 395, 905
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 6 cut(s) 83, 199, 349, 612, 811, 1027
StyI CCWWGG 2 cut(s) 76, 447
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 1012
TaqI TCGA 4 cut(s) 264, 819, 923, 1012
TasI AATT 4 cut(s) 739, 855, 869, 878
TauI GCSGC 2 cut(s) 397, 908
TfiI GAWTC 2 cut(s) 334, 917
Tru1I TTAA 1 cut(s) 1074
Tru9I TTAA 1 cut(s) 1074
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 2 cut(s) 280, 438
TseI GCWGC 1 cut(s) 387
Tsp45I GTSAC 2 cut(s) 280, 438
TspDTI ATGAA 2 cut(s) 393, 699
TspGWI ACGGA 2 cut(s) 51, 327
TspRI CASTG 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 1008
Van91I CCANNNNNTGG 2 cut(s) 131, 317
VpaK11BI GGWCC 2 cut(s) 253, 589
XceI RCATGY 2 cut(s) 185, 905
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.