Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010631

Physical Location & Seq

Genomic Coordinates Reverse (-)

46957965 .. 46958918

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG256200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGGTAAACAAAAGATCTTTGCTGATGTGGTTCCATCTTCTTCCTCTCCACCTCATCAGCCTCTCAGTGATGTGGCGGACATGCAGTTAGCCTTATCACTCTACTTAGCCGATTTAGTTGAGTCCACTACTATGTTGACAGATCCAGCTGATGCCCAAGCCCATTTGATGCAAGTTGATCCGGTTTGTGAACCAGCCCTCCTTCAAGTCTTGTTGGCCCATCAGGAAGCTGTTTTGGACCTTACTCTCCTCGGCCCCAACCTGGACATGTCAATGTTTGATAATCCACTAGATCCATCTTCTCAATCACTCCCTTTTCAAGCACATACTCCATCCCCTACCCTTCCTCCCTTCTCTTCATATCAAGCTCCGACTGCTTTGGTTTCCACTTATGCTTCTCCATCATCAATTCTCCGGTCGGATTTAGATGCGGTCTCTCTTCTCCTTTGGAATGTGATAGCCATTGTGGAAGATCCACCTTCTCCTCTGGTGTCTGCTCCACCTCCCACAAGACTTCGTCGATCCCGTGCTTCCCCTGGTCCAGGCAGTCTAGCACTGTCTCAGTCACTCAGGACTCAGGATGATTATGTGGTTCCTCTTCCCCCCTTTGAGGACACTCCTGTGTCACTTCCTGCTTCTGGAAGTCCATCTCTAGATGTCTCTCCATCCTTTGATGACCTTGCTCCGGCAGGTGGCATTGGTAGCTGGCCAGATGCAGCTATGGGTGCGGAATTAGGCTACTTTCTTGGAACTGTCAGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

26.76

Weight (kDa)

4.11

Isoelectric Point (pI)

69.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010631)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000022730
rosa_samantha	Rh1BG146400 Rh1DG178500 Rh2BG459300 Rh3CG304900 Rh3CG305000 Rh3DG300900 Rh3DG301000 Rh5DG566800 Rh6AG253200 Rh6AG253300 Rh6BG256200 Rh6BG256300 Rh6CG305700 Rh6CG305900 Rh6CG312300 Rh6CG312500 Rh6DG295800 Rh7CG434400
rosa_wichuraiana	Rw0G013180 Rw3G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	680
Acc36I	ACCTGC	1 cut(s)	680
AciI	CCGC	3 cut(s)	77, 431, 728
AclWI	GGATC	5 cut(s)	137, 173, 287, 467, 516
AcoI	YGGCCR	1 cut(s)	707
AfiI	CCNNNNNNNGG	6 cut(s)	262, 542, 610, 638, 685, 692
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	2 cut(s)	206, 320
AjnI	CCWGG	3 cut(s)	261, 535, 541
AleI	CACNNNNGTG	1 cut(s)	620
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
AluBI	AGCT	5 cut(s)	149, 230, 368, 705, 719
AluI	AGCT	5 cut(s)	149, 230, 368, 705, 719
Alw26I	GTCTC	3 cut(s)	439, 564, 664
AlwI	GGATC	5 cut(s)	137, 173, 287, 467, 516
AoxI	GGCC	3 cut(s)	216, 253, 707
ApeKI	GCWGC	1 cut(s)	716
AspS9I	GGNCC	4 cut(s)	217, 238, 254, 539
AvaII	GGWCC	2 cut(s)	238, 539
BalI	TGGCCA	1 cut(s)	709
BbvI	GCAGC	1 cut(s)	728
BccI	CCATC	7 cut(s)	43, 228, 304, 340, 409, 655, 673
BciT130I	CCWGG	3 cut(s)	263, 537, 543
BcoDI	GTCTC	3 cut(s)	439, 564, 664
BfaI	CTAG	3 cut(s)	290, 551, 653
BfuAI	ACCTGC	1 cut(s)	680
BglII	AGATCT	1 cut(s)	15
BisI	GCNGC	1 cut(s)	717
BlsI	GCNGC	1 cut(s)	718
Bme1390I	CCNGG	3 cut(s)	263, 537, 543
Bme18I	GGWCC	2 cut(s)	238, 539
BmgT120I	GGNCC	4 cut(s)	217, 238, 254, 539
BmiI	GGNNCC	3 cut(s)	33, 256, 594
BmrFI	CCNGG	3 cut(s)	263, 537, 543
BmsI	GCATC	4 cut(s)	142, 159, 418, 703
BsaI	GGTCTC	1 cut(s)	439
BsaJI	CCNNGG	2 cut(s)	250, 535
BsaWI	WCCGGW	2 cut(s)	181, 414
BsaXI	ACNNNNNCTCC	4 cut(s)	183, 213, 331, 361
Bsc4I	CCNNNNNNNGG	6 cut(s)	262, 542, 610, 638, 685, 692
BseBI	CCWGG	3 cut(s)	263, 537, 543
BseDI	CCNNGG	2 cut(s)	250, 535
BseGI	GGATG	3 cut(s)	332, 586, 665
BseLI	CCNNNNNNNGG	6 cut(s)	262, 542, 610, 638, 685, 692
BseMII	CTCAG	4 cut(s)	79, 575, 583, 590
BseRI	GAGGAG	2 cut(s)	239, 474
BseXI	GCAGC	1 cut(s)	728
Bsh1285I	CGRYCG	1 cut(s)	419
BshFI	GGCC	3 cut(s)	218, 255, 709
BsiEI	CGRYCG	1 cut(s)	419
BsiSI	CCGG	3 cut(s)	182, 415, 686
BslI	CCNNNNNNNGG	6 cut(s)	262, 542, 610, 638, 685, 692
BsmAI	GTCTC	3 cut(s)	439, 564, 664
BsnI	GGCC	3 cut(s)	218, 255, 709
Bso31I	GGTCTC	1 cut(s)	439
Bsp143I	GATC	6 cut(s)	15, 142, 178, 292, 472, 521
BspACI	CCGC	3 cut(s)	77, 431, 728
BspANI	GGCC	3 cut(s)	218, 255, 709
BspCNI	CTCAG	4 cut(s)	78, 574, 582, 589
BspLI	GGNNCC	3 cut(s)	33, 256, 594
BspMI	ACCTGC	1 cut(s)	680
BspPI	GGATC	5 cut(s)	137, 173, 287, 467, 516
BspTNI	GGTCTC	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	250, 535
BssMI	GATC	6 cut(s)	15, 142, 178, 292, 472, 521
Bst2UI	CCWGG	3 cut(s)	263, 537, 543
Bst4CI	ACNGT	2 cut(s)	558, 754
Bst6I	CTCTTC	3 cut(s)	361, 444, 603
BstC8I	GCNNGC	1 cut(s)	707
BstDEI	CTNAG	5 cut(s)	65, 106, 561, 569, 576
BstENI	CCTNNNNNAGG	1 cut(s)	540
BstF5I	GGATG	3 cut(s)	332, 586, 665
BstKTI	GATC	6 cut(s)	18, 145, 181, 295, 475, 524
BstMAI	GTCTC	3 cut(s)	439, 564, 664
BstMBI	GATC	6 cut(s)	15, 142, 178, 292, 472, 521
BstMCI	CGRYCG	1 cut(s)	419
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 702, 725
BstNI	CCWGG	3 cut(s)	263, 537, 543
BstNSI	RCATGY	2 cut(s)	85, 271
BstSCI	CCNGG	3 cut(s)	261, 535, 541
BstV1I	GCAGC	1 cut(s)	728
BstX2I	RGATCY	4 cut(s)	15, 142, 292, 472
BstYI	RGATCY	4 cut(s)	15, 142, 292, 472
BsuRI	GGCC	3 cut(s)	218, 255, 709
BtsCI	GGATG	3 cut(s)	332, 586, 665
BtsIMutI	CAGTG	2 cut(s)	73, 554
BveI	ACCTGC	1 cut(s)	680
Cac8I	GCNNGC	1 cut(s)	707
Cfr13I	GGNCC	4 cut(s)	217, 238, 254, 539
CviAII	CATG	2 cut(s)	82, 268
DdeI	CTNAG	5 cut(s)	65, 106, 561, 569, 576
DpnI	GATC	6 cut(s)	17, 144, 180, 294, 474, 523
DpnII	GATC	6 cut(s)	15, 142, 178, 292, 472, 521
EaeI	YGGCCR	1 cut(s)	707
Eam1104I	CTCTTC	3 cut(s)	361, 444, 603
EarI	CTCTTC	3 cut(s)	361, 444, 603
EciI	GGCGGA	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	439
Eco47I	GGWCC	2 cut(s)	238, 539
EcoNI	CCTNNNNNAGG	1 cut(s)	540
EcoRII	CCWGG	3 cut(s)	261, 535, 541
FaeI	CATG	2 cut(s)	85, 271
FaiI	YATR	8 cut(s)	83, 134, 269, 327, 361, 393, 588, 722
FatI	CATG	2 cut(s)	81, 267
Fnu4HI	GCNGC	1 cut(s)	717
FokI	GGATG	3 cut(s)	319, 593, 652
Fsp4HI	GCNGC	1 cut(s)	717
FspBI	CTAG	3 cut(s)	290, 551, 653
GluI	GCNGC	1 cut(s)	717
HaeIII	GGCC	3 cut(s)	218, 255, 709
HapII	CCGG	3 cut(s)	182, 415, 686
Hin1II	CATG	2 cut(s)	85, 271
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	2 cut(s)	122, 574
HpaII	CCGG	3 cut(s)	182, 415, 686
Hpy166II	GTNNAC	4 cut(s)	8, 126, 138, 191
Hpy188I	TCNGA	2 cut(s)	372, 421
Hpy188III	TCNNGA	5 cut(s)	224, 571, 578, 639, 653
Hpy8I	GTNNAC	4 cut(s)	8, 126, 138, 191
Hpy99I	CGWCG	1 cut(s)	522
HpyAV	CCTTC	4 cut(s)	212, 353, 361, 489
HpyCH4III	ACNGT	2 cut(s)	558, 754
HpyCH4V	TGCA	3 cut(s)	85, 172, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 702, 725
HpyF3I	CTNAG	5 cut(s)	65, 106, 561, 569, 576
Hsp92II	CATG	2 cut(s)	85, 271
Kzo9I	GATC	6 cut(s)	15, 142, 178, 292, 472, 521
LmnI	GCTCC	3 cut(s)	373, 502, 688
Lsp1109I	GCAGC	1 cut(s)	728
LweI	GCATC	4 cut(s)	142, 159, 418, 703
MaeI	CTAG	3 cut(s)	290, 551, 653
MaeIII	GTNAC	2 cut(s)	564, 624
MalI	GATC	6 cut(s)	17, 144, 180, 294, 474, 523
MboI	GATC	6 cut(s)	15, 142, 178, 292, 472, 521
MboII	GAAGA	7 cut(s)	30, 33, 291, 348, 431, 482, 590
MflI	RGATCY	4 cut(s)	15, 142, 292, 472
MlsI	TGGCCA	1 cut(s)	709
MluCI	AATT	2 cut(s)	408, 731
MluNI	TGGCCA	1 cut(s)	709
MlyI	GAGTC	2 cut(s)	131, 568
MmeI	TCCRAC	2 cut(s)	395, 399
Mox20I	TGGCCA	1 cut(s)	709
MscI	TGGCCA	1 cut(s)	709
MslI	CAYNNNNRTG	3 cut(s)	131, 272, 620
Msp20I	TGGCCA	1 cut(s)	709
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	3 cut(s)	182, 415, 686
MspR9I	CCNGG	3 cut(s)	263, 537, 543
MvaI	CCWGG	3 cut(s)	263, 537, 543
MwoI	GCNNNNNNNGC	3 cut(s)	374, 702, 725
NdeII	GATC	6 cut(s)	15, 142, 178, 292, 472, 521
NlaIII	CATG	2 cut(s)	85, 271
NlaIV	GGNNCC	3 cut(s)	33, 256, 594
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	564, 624
NspI	RCATGY	2 cut(s)	85, 271
OliI	CACNNNNGTG	1 cut(s)	620
PaqCI	CACCTGC	1 cut(s)	680
PciI	ACATGT	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	523
PflFI	GACNNNGTC	1 cut(s)	516
PkrI	GCNGC	1 cut(s)	718
PleI	GAGTC	2 cut(s)	130, 568
PpsI	GAGTC	2 cut(s)	130, 568
PscI	ACATGT	1 cut(s)	267
Psp6I	CCWGG	3 cut(s)	261, 535, 541
PspGI	CCWGG	3 cut(s)	261, 535, 541
PspN4I	GGNNCC	3 cut(s)	33, 256, 594
PspPI	GGNCC	4 cut(s)	217, 238, 254, 539
PsuI	RGATCY	4 cut(s)	15, 142, 292, 472
PsyI	GACNNNGTC	1 cut(s)	516
PvuII	CAGCTG	1 cut(s)	149
RseI	CAYNNNNRTG	3 cut(s)	131, 272, 620
SatI	GCNGC	1 cut(s)	717
Sau3AI	GATC	6 cut(s)	15, 142, 178, 292, 472, 521
Sau96I	GGNCC	4 cut(s)	217, 238, 254, 539
SchI	GAGTC	2 cut(s)	131, 568
ScrFI	CCNGG	3 cut(s)	263, 537, 543
SfaNI	GCATC	4 cut(s)	142, 159, 418, 703
SinI	GGWCC	2 cut(s)	238, 539
SmiMI	CAYNNNNRTG	3 cut(s)	131, 272, 620
Sse9I	AATT	2 cut(s)	408, 731
SsiI	CCGC	3 cut(s)	77, 431, 728
SspMI	CTAG	3 cut(s)	290, 551, 653
StyD4I	CCNGG	3 cut(s)	261, 535, 541
TaaI	ACNGT	2 cut(s)	558, 754
TaqI	TCGA	1 cut(s)	520
TasI	AATT	2 cut(s)	408, 731
TscAI	CASTG	2 cut(s)	73, 561
TseFI	GTSAC	2 cut(s)	564, 624
TseI	GCWGC	1 cut(s)	716
Tsp45I	GTSAC	2 cut(s)	564, 624
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	2 cut(s)	73, 561
Tth111I	GACNNNGTC	1 cut(s)	516
VpaK11BI	GGWCC	2 cut(s)	238, 539
XagI	CCTNNNNNAGG	1 cut(s)	540
XbaI	TCTAGA	1 cut(s)	652
XceI	RCATGY	2 cut(s)	85, 271
XspI	CTAG	3 cut(s)	290, 551, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.