Rh1DG178500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0010631
Physical Location & Seq
Reverse (-)
36324119 .. 36328900
4782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG178500.1

Sequence Viewer

Length: 267 bp
ATGGCCGTTGTGGAAGATCCACCTTCTCCTCTGGTGTCTGTTCCCCCTCCCACACAACTTCGTCGATCCCGTGCTTCCCCTGGTGCCGGTCGTGTTCTTGGTCGTCGTGGCCGACCCCGAGGTCGTGGTCTTCATCCTCAGCTGGCCAGGTGCAGCTACGGGTGCGGAATGAGGCTACTCTCTTGGAACTGTCAGGGATTAGGGTCCTCTCTGACAGCAAAAGCCCTTCGAAGGAGGGACGTTCCAAAGAGGACGTTCGTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.6

Weight (kDa)

11.95

Isoelectric Point (pI)

78.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 83
AciI CCGC 1 cut(s) 165
AclWI GGATC 2 cut(s) 11, 60
AcoI YGGCCR 3 cut(s) 3, 109, 144
AfiI CCNNNNNNNGG 2 cut(s) 86, 231
AjnI CCWGG 2 cut(s) 79, 146
AluBI AGCT 2 cut(s) 142, 156
AluI AGCT 2 cut(s) 142, 156
AlwI GGATC 2 cut(s) 11, 60
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 3 cut(s) 3, 109, 144
ApeKI GCWGC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 204
AsuII TTCGAA 1 cut(s) 229
AvaI CYCGRG 1 cut(s) 117
AvaII GGWCC 1 cut(s) 204
BalI TGGCCA 1 cut(s) 146
BanI GGYRCC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 165
BciT130I CCWGG 2 cut(s) 81, 148
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 2 cut(s) 81, 148
Bme18I GGWCC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 2 cut(s) 85, 205
BmrFI CCNGG 2 cut(s) 81, 148
BpiI GAAGAC 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 229
BsaJI CCNNGG 2 cut(s) 79, 118
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 231
Bse118I RCCGGY 1 cut(s) 86
BseBI CCWGG 2 cut(s) 81, 148
BseDI CCNNGG 2 cut(s) 79, 118
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 86, 231
BseMII CTCAG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 165
BsgI GTGCAG 1 cut(s) 172
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 3 cut(s) 5, 111, 146
BshNI GGYRCC 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 91
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 86, 231
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 3 cut(s) 5, 111, 146
BsoBI CYCGRG 1 cut(s) 117
Bsp119I TTCGAA 1 cut(s) 229
Bsp143I GATC 2 cut(s) 16, 65
BspACI CCGC 1 cut(s) 165
BspANI GGCC 3 cut(s) 5, 111, 146
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 85, 205
BspPI GGATC 2 cut(s) 11, 60
BspT104I TTCGAA 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 79, 118
BssMI GATC 2 cut(s) 16, 65
Bst2UI CCWGG 2 cut(s) 81, 148
Bst4CI ACNGT 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 2 cut(s) 19, 68
BstMBI GATC 2 cut(s) 16, 65
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 2 cut(s) 81, 148
BstSCI CCNGG 2 cut(s) 79, 146
BstV1I GCAGC 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 3 cut(s) 5, 111, 146
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 204
CviJI RGCY 7 cut(s) 5, 111, 142, 146, 156, 175, 224
CviKI_1 RGCY 7 cut(s) 5, 111, 142, 146, 156, 175, 224
DdeI CTNAG 1 cut(s) 138
DpnI GATC 2 cut(s) 18, 67
DpnII GATC 2 cut(s) 16, 65
DrdI GACNNNNNNGTC 1 cut(s) 120
DseDI GACNNNNNNGTC 1 cut(s) 120
EaeI YGGCCR 3 cut(s) 3, 109, 144
Eco47I GGWCC 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 79, 146
FaqI GGGAC 1 cut(s) 251
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 154
HaeIII GGCC 3 cut(s) 5, 111, 146
HapII CCGG 1 cut(s) 87
HpaII CCGG 1 cut(s) 87
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 1 cut(s) 259
Hpy99I CGWCG 2 cut(s) 66, 108
HpyAV CCTTC 3 cut(s) 33, 225, 236
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4IV ACGT 2 cut(s) 240, 254
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 2 cut(s) 240, 254
Kzo9I GATC 2 cut(s) 16, 65
LpnPI CCDG 8 cut(s) 17, 66, 93, 100, 128, 133, 160, 179
Lsp1109I GCAGC 1 cut(s) 165
MaeII ACGT 2 cut(s) 240, 254
MalI GATC 2 cut(s) 18, 67
MboI GATC 2 cut(s) 16, 65
MboII GAAGA 2 cut(s) 26, 122
MflI RGATCY 1 cut(s) 16
MlsI TGGCCA 1 cut(s) 146
MluNI TGGCCA 1 cut(s) 146
MnlI CCTC 8 cut(s) 39, 57, 113, 147, 165, 217, 228, 243
Mox20I TGGCCA 1 cut(s) 146
MscI TGGCCA 1 cut(s) 146
Msp20I TGGCCA 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 2 cut(s) 81, 148
MvaI CCWGG 2 cut(s) 81, 148
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeII GATC 2 cut(s) 16, 65
NlaIV GGNNCC 2 cut(s) 85, 205
NspV TTCGAA 1 cut(s) 229
PcsI WCGNNNNNNNCGW 2 cut(s) 67, 109
PkrI GCNGC 1 cut(s) 155
PpuMI RGGWCCY 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 204
Psp6I CCWGG 2 cut(s) 79, 146
PspGI CCWGG 2 cut(s) 79, 146
PspN4I GGNNCC 2 cut(s) 85, 205
PspPI GGNCC 1 cut(s) 204
PspPPI RGGWCCY 1 cut(s) 204
PsuI RGATCY 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 142
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 2 cut(s) 16, 65
Sau96I GGNCC 1 cut(s) 204
ScrFI CCNGG 2 cut(s) 81, 148
SetI ASST 7 cut(s) 25, 124, 144, 152, 158, 243, 257
SfuI TTCGAA 1 cut(s) 229
SinI GGWCC 1 cut(s) 204
SsiI CCGC 1 cut(s) 165
StyD4I CCNGG 2 cut(s) 79, 146
TaaI ACNGT 1 cut(s) 191
TaiI ACGT 2 cut(s) 243, 257
TaqI TCGA 2 cut(s) 64, 229
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.