RLG00000023312

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0007546
Physical Location & Seq
Forward (+)
21726887 .. 21727971
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023312

Sequence Viewer

Length: 312 bp
ATGGCGGTGGCAGTGCGGAAAGACGATTGGTCGAAAGCAAACCTATCTTCAATGGTTTTGCTATCTTCAGATCTTCATCCCCTTTTAAGACTTCGTGCAATAAGAGCAGTAACAGGTGGTGATAAGGTCTTTGTGCACGACGAGAAATCTCAATCCAAGACAATGAAGATAGTAGTTGGAATTGATGAAAAAAGCATCAAGCATGCTGCGATCGTCAATGTGAACCCTGTCAAAGAGGAGGAGAGGGAGCCTAAAGTTGAGGAAATCATCGTAGGATGGTCTCAGACTTGGCATTGTAGGAGACGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.69

Weight (kDa)

9.46

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 16
AcuI CTGAAG 1 cut(s) 51
AgsI TTSAA 1 cut(s) 51
AhdI GACNNNNNGTC 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 2 cut(s) 285, 295
Alw44I GTGCAC 1 cut(s) 134
ApaLI GTGCAC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 285, 295
BglII AGATCT 1 cut(s) 70
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmeRI GACNNNNNGTC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 285
Bse8I GATNNNNATC 1 cut(s) 75
BseGI GGATG 2 cut(s) 76, 281
BseJI GATNNNNATC 1 cut(s) 75
BseMII CTCAG 1 cut(s) 296
BseRI GAGGAG 2 cut(s) 251, 254
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 1 cut(s) 193
Bsh1285I CGRYCG 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 138
BsmAI GTCTC 2 cut(s) 285, 295
BsmBI CGTCTC 1 cut(s) 295
Bso31I GGTCTC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 2 cut(s) 70, 210
BspACI CCGC 2 cut(s) 5, 16
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 249
BspTNI GGTCTC 1 cut(s) 285
BssMI GATC 2 cut(s) 70, 210
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 2 cut(s) 76, 281
BstKTI GATC 2 cut(s) 73, 213
BstMAI GTCTC 2 cut(s) 285, 295
BstMBI GATC 2 cut(s) 70, 210
BstMCI CGRYCG 1 cut(s) 213
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 206
BstSLI GKGCMC 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BtsCI GGATG 2 cut(s) 76, 281
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 204
CviAII CATG 1 cut(s) 203
CviJI RGCY 1 cut(s) 250
CviKI_1 RGCY 1 cut(s) 250
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 72, 212
DpnII GATC 2 cut(s) 70, 210
DriI GACNNNNNGTC 1 cut(s) 28
Eam1105I GACNNNNNGTC 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 295
FaeI CATG 1 cut(s) 206
FaiI YATR 1 cut(s) 204
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 2 cut(s) 63, 288
Fsp4HI GCNGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 207
Hin1II CATG 1 cut(s) 206
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 2 cut(s) 136, 223
Hpy188I TCNGA 2 cut(s) 70, 285
Hpy8I GTNNAC 2 cut(s) 136, 223
Hpy99I CGWCG 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 98, 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 2 cut(s) 70, 210
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 2 cut(s) 99, 240
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 204
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 109
MalI GATC 2 cut(s) 72, 212
MboI GATC 2 cut(s) 70, 210
MboII GAAGA 4 cut(s) 39, 57, 65, 178
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 4 cut(s) 229, 232, 237, 253
MseI TTAA 2 cut(s) 86, 310
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 2 cut(s) 70, 210
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 249
NspI RCATGY 1 cut(s) 206
PaeI GCATGC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 208
Ple19I CGATCG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 249
PsrI GAACNNNNNNTAC 1 cut(s) 289
PsuI RGATCY 1 cut(s) 70
PvuI CGATCG 1 cut(s) 213
SaqAI TTAA 2 cut(s) 86, 310
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 2 cut(s) 70, 210
SduI GDGCHC 1 cut(s) 138
SetI ASST 4 cut(s) 45, 118, 129, 307
SfaNI GCATC 1 cut(s) 204
SgeI CNNG 9 cut(s) 107, 126, 149, 154, 169, 211, 215, 239, 300
SphI GCATGC 1 cut(s) 206
Sse9I AATT 1 cut(s) 180
SsiI CCGC 2 cut(s) 5, 16
TaiI ACGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 32
TasI AATT 1 cut(s) 180
Tru1I TTAA 2 cut(s) 86, 310
Tru9I TTAA 2 cut(s) 86, 310
TscAI CASTG 1 cut(s) 18
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 65, 179, 201
TspRI CASTG 1 cut(s) 18
VneI GTGCAC 1 cut(s) 134
XceI RCATGY 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.