Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007546

Physical Location & Seq

Genomic Coordinates Reverse (-)

39519571 .. 39520452

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCCACGGAAGCCAGACGAGTTGGTTTACATTGCCACCTATGATATTCTTTTCGGCCAGATTTATGCTGGTTCATTTGTAATTCCTCTATTCCGGCGGATTGTCTTGTGCAAGAGAAATGCTGACATAGAAAAAAGAAATCAAGCCAGACAGCAATTTGCTCGACACATTGAATTGTCTGATCTCTTACTAAGACGAAAGGTATCTCATTCAAATTTTGCATCACTTTTTCAGTCAAATGTTTATTGCTCTCTGCTATGTTATGAAGTGTTGCAGGTTATTAGTAGAAGGTTTGCAGTATCAAAGGAAGGGTTGCAGCTTTGGGGAGGAAGAGTCTTGGATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

13.41

Weight (kDa)

9.72

Isoelectric Point (pI)

64.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131821 RchiOBHm_Chr2g0162631 RchiOBHm_Chr4g0410331 RchiOBHm_Chr4g0420191 RchiOBHm_Chr5g0010521
rosa_laevigata	RLG00000016801 RLG00000023312
rosa_roxburghii	Rroxscaffold_2G00085420
rosa_samantha	Rh1AG135000 Rh1AG162200 Rh1AG256800 Rh1AG295900 Rh1CG151700 Rh1DG235900 Rh2BG384100 Rh2CG632200 Rh3BG375400 Rh3CG255600 Rh5AG535000 Rh5DG090700 Rh5DG473500 Rh6AG293000 Rh7BG431900
rosa_wichuraiana	Rw2G003760 Rw5G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	265
AciI	CCGC	1 cut(s)	97
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	173, 213
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	328
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
BmsI	GCATC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bse3DI	GCAATG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	346
BseMI	GCAATG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	328
BshFI	GGCC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	94
BsnI	GGCC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	191
BstDSI	CCRYGG	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	346
BveI	ACCTGC	1 cut(s)	265
CviJI	RGCY	4 cut(s)	13, 57, 146, 319
CviKI_1	RGCY	4 cut(s)	13, 57, 146, 319
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
EciI	GGCGGA	1 cut(s)	112
FaiI	YATR	5 cut(s)	42, 66, 128, 259, 264
Fnu4HI	GCNGC	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	94
HinfI	GANTC	1 cut(s)	333
HpaII	CCGG	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	282, 302
HpyCH4V	TGCA	5 cut(s)	111, 221, 274, 296, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	181
LpnPI	CCDG	6 cut(s)	27, 54, 71, 107, 160, 260
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	230
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	1 cut(s)	342
MluCI	AATT	4 cut(s)	81, 155, 173, 214
MlyI	GAGTC	1 cut(s)	342
MnlI	CCTC	2 cut(s)	96, 320
MseI	TTAA	1 cut(s)	346
MspI	CCGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	318
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	346
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	342
SetI	ASST	5 cut(s)	41, 204, 279, 293, 321
SfaNI	GCATC	1 cut(s)	230
Sse9I	AATT	4 cut(s)	81, 155, 173, 214
SsiI	CCGC	1 cut(s)	97
TaqI	TCGA	1 cut(s)	163
TasI	AATT	4 cut(s)	81, 155, 173, 214
Tru1I	TTAA	1 cut(s)	346
Tru9I	TTAA	1 cut(s)	346
TseI	GCWGC	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	63, 279
TspGWI	ACGGA	1 cut(s)	22
XapI	RAATTY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.