Rh2BG384100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007546
Physical Location & Seq
Forward (+)
54452246 .. 54459677
7432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG384100.1

Sequence Viewer

Length: 483 bp
ATGACCAGATCAGACACCGATCAAGACACCAAACGGTCAGGTACAGAGCCGACGAGATCGGAAGAGTTCGGCATCCCCGATGAATATCTTCGTACAAAGACAACTATAGTAAGGTATTTGTTGAAGGGCAGAGCAAATCTTAAGATAATCGAACGGGTGTTGAAGGCTGTCAATGTTCTGAATAGCAAGTGGAGGAAGCCAGATGAGTTGCATGCCAATCCAACGAGTATCGGCTGTGATGGTACCGGAGACTTTAACCCAAAAGGTGATTCAAAGCAAGAAGGTGATCTGAAGAGGTCTGGCGGGTTGAGTTCGCCGTTTCTTGATGAAGCTGTGCATGGCAGCCGTCAAAGCCTCGAGATATCAAAACCTCAGTGTAATACTCTGAAAATTGATGACAATATGACCTTTATTGGTTACAGAAACAATACAAGGTCAAGAAGCTGCAAAAGGGACTGTCTAAGGAACCCTGTGAATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.05

Weight (kDa)

9.25

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 242
AciI CCGC 1 cut(s) 303
AcuI CTGAAG 1 cut(s) 311
AfaI GTAC 3 cut(s) 43, 94, 244
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 3 cut(s) 124, 163, 273
AjuI GAANNNNNNNTTGG 2 cut(s) 253, 285
AluBI AGCT 2 cut(s) 332, 444
AluI AGCT 2 cut(s) 332, 444
Alw26I GTCTC 1 cut(s) 243
Ama87I CYCGRG 1 cut(s) 356
ApeKI GCWGC 2 cut(s) 342, 444
Asp700I GAANNNNTTC 1 cut(s) 87
Asp718I GGTACC 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 278, 296
AvaI CYCGRG 1 cut(s) 356
BanI GGYRCC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 354, 431
BccI CCATC 1 cut(s) 233
BceAI ACGGC 2 cut(s) 301, 330
BcoDI GTCTC 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 140
BisI GCNGC 2 cut(s) 343, 445
BlsI GCNGC 2 cut(s) 344, 446
BmeT110I CYCGRG 1 cut(s) 356
BmiI GGNNCC 2 cut(s) 244, 467
BmsI GCATC 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 245
Bse8I GATNNNNATC 1 cut(s) 84
BseGI GGATG 1 cut(s) 72
BseJI GATNNNNATC 1 cut(s) 84
BseMII CTCAG 1 cut(s) 386
BseXI GCAGC 2 cut(s) 354, 431
BshNI GGYRCC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 1 cut(s) 246
BslFI GGGAC 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 467
BsoBI CYCGRG 1 cut(s) 356
Bsp143I GATC 4 cut(s) 8, 19, 56, 286
BspACI CCGC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 385
BspLI GGNNCC 2 cut(s) 244, 467
BspT107I GGYRCC 1 cut(s) 242
BspTI CTTAAG 1 cut(s) 140
BssMI GATC 4 cut(s) 8, 19, 56, 286
Bst4CI ACNGT 2 cut(s) 36, 458
Bst6I CTCTTC 2 cut(s) 57, 287
BstAFI CTTAAG 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 2 cut(s) 372, 461
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 4 cut(s) 11, 22, 59, 289
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 4 cut(s) 8, 19, 56, 286
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstNSI RCATGY 1 cut(s) 215
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 2 cut(s) 354, 431
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 380, 478
Cac8I GCNNGC 1 cut(s) 213
Csp6I GTAC 3 cut(s) 42, 93, 243
CviAII CATG 2 cut(s) 212, 338
CviJI RGCY 8 cut(s) 49, 167, 199, 234, 332, 345, 354, 444
CviKI_1 RGCY 8 cut(s) 49, 167, 199, 234, 332, 345, 354, 444
CviQI GTAC 3 cut(s) 42, 93, 243
DdeI CTNAG 2 cut(s) 372, 461
DpnI GATC 4 cut(s) 10, 21, 58, 288
DpnII GATC 4 cut(s) 8, 19, 56, 286
Eam1104I CTCTTC 2 cut(s) 57, 287
EarI CTCTTC 2 cut(s) 57, 287
Eco32I GATATC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 311
Eco88I CYCGRG 1 cut(s) 356
EcoRV GATATC 1 cut(s) 363
FaeI CATG 2 cut(s) 215, 341
FaiI YATR 4 cut(s) 107, 213, 339, 404
FaqI GGGAC 1 cut(s) 467
FatI CATG 2 cut(s) 211, 337
FauI CCCGC 1 cut(s) 296
Fnu4HI GCNGC 2 cut(s) 343, 445
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 343, 445
GluI GCNGC 2 cut(s) 343, 445
HapII CCGG 1 cut(s) 246
Hin1II CATG 2 cut(s) 215, 341
HinfI GANTC 2 cut(s) 269, 475
HpaII CCGG 1 cut(s) 246
HphI GGTGA 2 cut(s) 278, 296
Hpy188I TCNGA 5 cut(s) 13, 61, 180, 291, 387
Hpy188III TCNNGA 4 cut(s) 23, 323, 358, 438
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 3 cut(s) 118, 157, 275
HpyCH4III ACNGT 2 cut(s) 36, 458
HpyCH4V TGCA 3 cut(s) 211, 337, 447
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpyF3I CTNAG 2 cut(s) 372, 461
Hsp92II CATG 2 cut(s) 215, 341
KpnI GGTACC 1 cut(s) 246
Kzo9I GATC 4 cut(s) 8, 19, 56, 286
LpnPI CCDG 5 cut(s) 19, 24, 213, 259, 285
Lsp1109I GCAGC 2 cut(s) 354, 431
LweI GCATC 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 416
MalI GATC 4 cut(s) 10, 21, 58, 288
MboI GATC 4 cut(s) 8, 19, 56, 286
MboII GAAGA 3 cut(s) 74, 80, 304
MluCI AATT 1 cut(s) 390
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 4 cut(s) 186, 288, 365, 381
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 2 cut(s) 141, 255
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 351
NdeII GATC 4 cut(s) 8, 19, 56, 286
NlaIII CATG 2 cut(s) 215, 341
NlaIV GGNNCC 2 cut(s) 244, 467
NspI RCATGY 1 cut(s) 215
PaeI GCATGC 1 cut(s) 215
PaeR7I CTCGAG 1 cut(s) 356
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 2 cut(s) 269, 475
PkrI GCNGC 2 cut(s) 344, 446
PspN4I GGNNCC 2 cut(s) 244, 467
RsaI GTAC 3 cut(s) 43, 94, 244
RsaNI GTAC 3 cut(s) 42, 93, 243
SaqAI TTAA 2 cut(s) 141, 255
SatI GCNGC 2 cut(s) 343, 445
Sau3AI GATC 4 cut(s) 8, 19, 56, 286
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 1 cut(s) 105
Sfr274I CTCGAG 1 cut(s) 356
SlaI CTCGAG 1 cut(s) 356
SmlI CTYRAG 2 cut(s) 140, 356
SmoI CTYRAG 2 cut(s) 140, 356
SphI GCATGC 1 cut(s) 215
Sse9I AATT 1 cut(s) 390
SsiI CCGC 1 cut(s) 303
TaaI ACNGT 2 cut(s) 36, 458
TaqI TCGA 2 cut(s) 150, 357
TasI AATT 1 cut(s) 390
TfiI GAWTC 2 cut(s) 269, 475
Tru1I TTAA 2 cut(s) 141, 255
Tru9I TTAA 2 cut(s) 141, 255
TscAI CASTG 1 cut(s) 380
TseI GCWGC 2 cut(s) 342, 444
TspDTI ATGAA 2 cut(s) 96, 342
TspRI CASTG 1 cut(s) 380
Vha464I CTTAAG 1 cut(s) 140
XceI RCATGY 1 cut(s) 215
XhoI CTCGAG 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.