No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0131821 RchiOBHm_Chr2g0162631 RchiOBHm_Chr4g0410331 RchiOBHm_Chr4g0420191 RchiOBHm_Chr5g0010521 |
| rosa_laevigata | RLG00000016801 RLG00000023312 |
| rosa_roxburghii | Rroxscaffold_2G00085420 |
| rosa_samantha | Rh1AG135000 Rh1AG162200 Rh1AG256800 Rh1AG295900 Rh1CG151700 Rh1DG235900 Rh2BG384100 Rh2CG632200 Rh3BG375400 Rh3CG255600 Rh5AG535000 Rh5DG090700 Rh5DG473500 Rh6AG293000 Rh7BG431900 |
| rosa_wichuraiana | Rw2G003760 Rw5G026980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 288 |
| AfaI | GTAC | 1 cut(s) | 184 |
| AgeI | ACCGGT | 1 cut(s) | 179 |
| AgsI | TTSAA | 1 cut(s) | 225 |
| AluBI | AGCT | 2 cut(s) | 302, 418 |
| AluI | AGCT | 2 cut(s) | 302, 418 |
| Alw26I | GTCTC | 2 cut(s) | 129, 295 |
| ApeKI | GCWGC | 2 cut(s) | 59, 171 |
| AsiGI | ACCGGT | 1 cut(s) | 179 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 174, 207 |
| BbvI | GCAGC | 2 cut(s) | 46, 183 |
| BceAI | ACGGC | 2 cut(s) | 306, 403 |
| BclI | TGATCA | 1 cut(s) | 91 |
| BcoDI | GTCTC | 2 cut(s) | 129, 295 |
| BfaI | CTAG | 2 cut(s) | 27, 419 |
| BfmI | CTRYAG | 1 cut(s) | 401 |
| BisI | GCNGC | 2 cut(s) | 60, 172 |
| BlsI | GCNGC | 2 cut(s) | 61, 173 |
| BmsI | GCATC | 2 cut(s) | 155, 193 |
| BpmI | CTGGAG | 1 cut(s) | 99 |
| BsaBI | GATNNNNATC | 1 cut(s) | 225 |
| BsaWI | WCCGGW | 2 cut(s) | 179, 217 |
| Bse118I | RCCGGY | 1 cut(s) | 179 |
| Bse1I | ACTGG | 1 cut(s) | 82 |
| Bse3DI | GCAATG | 1 cut(s) | 397 |
| Bse8I | GATNNNNATC | 1 cut(s) | 225 |
| BseJI | GATNNNNATC | 1 cut(s) | 225 |
| BseMI | GCAATG | 1 cut(s) | 397 |
| BseMII | CTCAG | 1 cut(s) | 200 |
| BseNI | ACTGG | 1 cut(s) | 82 |
| BseXI | GCAGC | 2 cut(s) | 46, 183 |
| BshTI | ACCGGT | 1 cut(s) | 179 |
| BsiSI | CCGG | 2 cut(s) | 180, 218 |
| BsmAI | GTCTC | 2 cut(s) | 129, 295 |
| Bsp143I | GATC | 3 cut(s) | 91, 101, 271 |
| BspCNI | CTCAG | 1 cut(s) | 199 |
| BsrDI | GCAATG | 1 cut(s) | 397 |
| BsrFI | RCCGGY | 1 cut(s) | 179 |
| BsrI | ACTGG | 1 cut(s) | 82 |
| BssAI | RCCGGY | 1 cut(s) | 179 |
| BssMI | GATC | 3 cut(s) | 91, 101, 271 |
| Bst4CI | ACNGT | 1 cut(s) | 405 |
| BstDEI | CTNAG | 1 cut(s) | 186 |
| BstKTI | GATC | 3 cut(s) | 94, 104, 274 |
| BstMAI | GTCTC | 2 cut(s) | 129, 295 |
| BstMBI | GATC | 3 cut(s) | 91, 101, 271 |
| BstNSI | RCATGY | 1 cut(s) | 114 |
| BstSFI | CTRYAG | 1 cut(s) | 401 |
| BstV1I | GCAGC | 2 cut(s) | 46, 183 |
| Cfr10I | RCCGGY | 1 cut(s) | 179 |
| Csp6I | GTAC | 1 cut(s) | 183 |
| CspAI | ACCGGT | 1 cut(s) | 179 |
| CviAII | CATG | 3 cut(s) | 111, 128, 197 |
| CviJI | RGCY | 5 cut(s) | 174, 302, 308, 321, 418 |
| CviKI_1 | RGCY | 5 cut(s) | 174, 302, 308, 321, 418 |
| CviQI | GTAC | 1 cut(s) | 183 |
| DdeI | CTNAG | 1 cut(s) | 186 |
| DpnI | GATC | 3 cut(s) | 93, 103, 273 |
| DpnII | GATC | 3 cut(s) | 91, 101, 271 |
| Eco57I | CTGAAG | 1 cut(s) | 288 |
| FaeI | CATG | 3 cut(s) | 114, 131, 200 |
| FaiI | YATR | 6 cut(s) | 112, 129, 198, 251, 266, 372 |
| FatI | CATG | 3 cut(s) | 110, 127, 196 |
| FbaI | TGATCA | 1 cut(s) | 91 |
| Fnu4HI | GCNGC | 2 cut(s) | 60, 172 |
| Fsp4HI | GCNGC | 2 cut(s) | 60, 172 |
| FspBI | CTAG | 2 cut(s) | 27, 419 |
| GluI | GCNGC | 2 cut(s) | 60, 172 |
| GsuI | CTGGAG | 1 cut(s) | 99 |
| HapII | CCGG | 2 cut(s) | 180, 218 |
| Hin1II | CATG | 3 cut(s) | 114, 131, 200 |
| HindIII | AAGCTT | 1 cut(s) | 300 |
| HinfI | GANTC | 1 cut(s) | 221 |
| HpaII | CCGG | 2 cut(s) | 180, 218 |
| Hpy188III | TCNNGA | 1 cut(s) | 412 |
| HpyAV | CCTTC | 1 cut(s) | 353 |
| HpyCH4III | ACNGT | 1 cut(s) | 405 |
| HpyCH4IV | ACGT | 1 cut(s) | 165 |
| HpyCH4V | TGCA | 2 cut(s) | 114, 206 |
| HpyF3I | CTNAG | 1 cut(s) | 186 |
| HpySE526I | ACGT | 1 cut(s) | 165 |
| Hsp92II | CATG | 3 cut(s) | 114, 131, 200 |
| Ksp22I | TGATCA | 1 cut(s) | 91 |
| Kzo9I | GATC | 3 cut(s) | 91, 101, 271 |
| LpnPI | CCDG | 6 cut(s) | 63, 173, 193, 231, 300, 397 |
| Lsp1109I | GCAGC | 2 cut(s) | 46, 183 |
| LweI | GCATC | 2 cut(s) | 155, 193 |
| MaeI | CTAG | 2 cut(s) | 27, 419 |
| MaeII | ACGT | 1 cut(s) | 165 |
| MalI | GATC | 3 cut(s) | 93, 103, 273 |
| MboI | GATC | 3 cut(s) | 91, 101, 271 |
| MluCI | AATT | 2 cut(s) | 235, 333 |
| MnlI | CCTC | 1 cut(s) | 23 |
| MseI | TTAA | 3 cut(s) | 336, 407, 430 |
| MslI | CAYNNNNRTG | 1 cut(s) | 201 |
| MspI | CCGG | 2 cut(s) | 180, 218 |
| NdeII | GATC | 3 cut(s) | 91, 101, 271 |
| NlaIII | CATG | 3 cut(s) | 114, 131, 200 |
| NspI | RCATGY | 1 cut(s) | 114 |
| PfeI | GAWTC | 1 cut(s) | 221 |
| PinAI | ACCGGT | 1 cut(s) | 179 |
| PkrI | GCNGC | 2 cut(s) | 61, 173 |
| RsaI | GTAC | 1 cut(s) | 184 |
| RsaNI | GTAC | 1 cut(s) | 183 |
| RseI | CAYNNNNRTG | 1 cut(s) | 201 |
| SaqAI | TTAA | 3 cut(s) | 336, 407, 430 |
| SatI | GCNGC | 2 cut(s) | 60, 172 |
| Sau3AI | GATC | 3 cut(s) | 91, 101, 271 |
| SetI | ASST | 4 cut(s) | 168, 192, 304, 420 |
| SfaNI | GCATC | 2 cut(s) | 155, 193 |
| SfcI | CTRYAG | 1 cut(s) | 401 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 201 |
| Sse9I | AATT | 2 cut(s) | 235, 333 |
| SspMI | CTAG | 2 cut(s) | 27, 419 |
| TaaI | ACNGT | 1 cut(s) | 405 |
| TaiI | ACGT | 1 cut(s) | 168 |
| TasI | AATT | 2 cut(s) | 235, 333 |
| TfiI | GAWTC | 1 cut(s) | 221 |
| Tru1I | TTAA | 3 cut(s) | 336, 407, 430 |
| Tru9I | TTAA | 3 cut(s) | 336, 407, 430 |
| TseI | GCWGC | 2 cut(s) | 59, 171 |
| TspDTI | ATGAA | 1 cut(s) | 359 |
| XceI | RCATGY | 1 cut(s) | 114 |
| XspI | CTAG | 2 cut(s) | 27, 419 |