Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007546

Physical Location & Seq

Genomic Coordinates Reverse (-)

48994541 .. 48996382

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG293000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCCACGAGTAATCCTATTTTCATTACTTTATGAGCTTTCTGTTATAGAAAGTACCCTACTTATTGCCTCATTACTTGTGGTTTTGCAGAAGCCAGACGAGTTGGTTTACATTGCTACCTATGATATTCTTTTCGGCCAGATTTATGCTGGTTCATTTGTAATTCCTCTGTTCCAGTGGATTGTCTTGCTCAAGAGAAATGCTGACATAGAAAAAAGAAATCTAGCTAGACAGCAATTTGCTCAACACAATGAATTGTCTGATCTCTTACTAAGACGAAAGGATGGTCAAAAGAAGCAACCAACAACTGTAACAAAAGCCTCAAAGGATACCCAGCCTGCAGCTTCTCCACCATCTCCCAAGTTTTCAGACGTGTTTGCATTCAGTGGACCAGCACCGGAGAGAATCAACGGCAGGCTGGCAATGGTGGGCTTCGTTGCAGCTCTGGCTGTCGAACTATCAAAGGGGCAAGATGTGTTTGCTCAGATATCCAACGGCCCCGGGGTACCTTTGTTCATCGGCACAAGTATTTTGCTATCAGTAGCATCCTTGGTTCCTCTATTGAAAGGAGTGACCGTGGAGTCCAAATCCGACGGAATCTTTACCTCGGATGCAGAGCTCTGGAACGGAAGGTTGGCCATGTTGGGTCTTGTAGCTTTGGCCTTCACCGAGTACATGACCGGCAGTGCCCTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

232

Amino Acids

25.21

Weight (kDa)

7.89

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131821 RchiOBHm_Chr2g0162631 RchiOBHm_Chr4g0410331 RchiOBHm_Chr4g0420191 RchiOBHm_Chr5g0010521
rosa_laevigata	RLG00000016801 RLG00000023312
rosa_roxburghii	Rroxscaffold_2G00085420
rosa_samantha	Rh1AG135000 Rh1AG162200 Rh1AG256800 Rh1AG295900 Rh1CG151700 Rh1DG235900 Rh2BG384100 Rh2CG632200 Rh3BG375400 Rh3CG255600 Rh5AG535000 Rh5DG090700 Rh5DG473500 Rh6AG293000 Rh7BG431900
rosa_wichuraiana	Rw2G003760 Rw5G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	580
Acc65I	GGTACC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	505
AcoI	YGGCCR	2 cut(s)	136, 636
AfaI	GTAC	3 cut(s)	55, 507, 674
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	1 cut(s)	565
AjiI	CACGTC	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AluBI	AGCT	6 cut(s)	37, 227, 344, 443, 619, 656
AluI	AGCT	6 cut(s)	37, 227, 344, 443, 619, 656
Alw21I	GWGCWC	1 cut(s)	621
Ama87I	CYCGRG	1 cut(s)	500
AoxI	GGCC	4 cut(s)	136, 496, 636, 660
ApeKI	GCWGC	2 cut(s)	341, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	271, 303
Asp718I	GGTACC	1 cut(s)	505
AspS9I	GGNCC	2 cut(s)	389, 497
AsuC2I	CCSGG	2 cut(s)	501, 502
AsuHPI	GGTGA	1 cut(s)	658
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	691
BaeI	ACNNNNGTAYC	2 cut(s)	497, 530
BalI	TGGCCA	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	621
BauI	CACGAG	1 cut(s)	6
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	353, 452
BccI	CCATC	2 cut(s)	278, 361
BceAI	ACGGC	2 cut(s)	427, 511
BciVI	GTATCC	1 cut(s)	322
BcnI	CCSGG	2 cut(s)	501, 502
BfaI	CTAG	3 cut(s)	224, 228, 692
BfmI	CTRYAG	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	322
BisI	GCNGC	2 cut(s)	342, 441
BlsI	GCNGC	2 cut(s)	343, 442
Bme1390I	CCNGG	2 cut(s)	501, 502
Bme18I	GGWCC	1 cut(s)	389
BmeT110I	CYCGRG	1 cut(s)	500
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	389, 497
BmiI	GGNNCC	3 cut(s)	499, 507, 555
BmrFI	CCNGG	2 cut(s)	501, 502
BmsI	GCATC	2 cut(s)	554, 601
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	2 cut(s)	501, 502
BsaJI	CCNNGG	6 cut(s)	499, 500, 501, 549, 576, 606
BsaWI	WCCGGW	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bse118I	RCCGGY	1 cut(s)	680
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	2 cut(s)	111, 429
BseDI	CCNNGG	6 cut(s)	499, 500, 501, 549, 576, 606
BseGI	GGATG	3 cut(s)	289, 545, 616
BseMI	GCAATG	2 cut(s)	111, 429
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	175
BseSI	GKGCMC	1 cut(s)	691
BseXI	GCAGC	2 cut(s)	353, 452
BseYI	CCCAGC	1 cut(s)	333
BshFI	GGCC	4 cut(s)	138, 498, 638, 662
BshNI	GGYRCC	1 cut(s)	505
BsiHKAI	GWGCWC	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	3 cut(s)	398, 501, 681
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	4 cut(s)	138, 498, 638, 662
BsoBI	CYCGRG	1 cut(s)	500
Bsp1286I	GDGCHC	2 cut(s)	621, 691
Bsp143I	GATC	1 cut(s)	262
BspANI	GGCC	4 cut(s)	138, 498, 638, 662
BspCNI	CTCAG	1 cut(s)	496
BspLI	GGNNCC	3 cut(s)	499, 507, 555
BspMAI	CTGCAG	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	505
BsrDI	GCAATG	2 cut(s)	111, 429
BsrFI	RCCGGY	1 cut(s)	680
BsrI	ACTGG	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	680
BssECI	CCNNGG	6 cut(s)	499, 500, 501, 549, 576, 606
BssMI	GATC	1 cut(s)	262
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	549
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	310, 577
BstC8I	GCNNGC	3 cut(s)	339, 416, 420
BstDEI	CTNAG	2 cut(s)	272, 483
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	3 cut(s)	289, 545, 616
BstKTI	GATC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	499, 500
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	691
BstV1I	GCAGC	2 cut(s)	353, 452
BsuI	GTATCC	1 cut(s)	322
BsuRI	GGCC	4 cut(s)	138, 498, 638, 662
BtgI	CCRYGG	1 cut(s)	576
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	3 cut(s)	289, 545, 616
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	3 cut(s)	182, 391, 691
Cac8I	GCNNGC	3 cut(s)	339, 416, 420
Cfr10I	RCCGGY	1 cut(s)	680
Cfr13I	GGNCC	2 cut(s)	389, 497
Cfr9I	CCCGGG	1 cut(s)	500
Csp6I	GTAC	3 cut(s)	54, 506, 673
CviAII	CATG	2 cut(s)	640, 676
CviQI	GTAC	3 cut(s)	54, 506, 673
DdeI	CTNAG	2 cut(s)	272, 483
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
DrdI	GACNNNNNNGTC	1 cut(s)	580
DseDI	GACNNNNNNGTC	1 cut(s)	580
EaeI	YGGCCR	2 cut(s)	136, 636
Ecl136II	GAGCTC	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	549
Eco24I	GRGCYC	1 cut(s)	621
Eco32I	GATATC	1 cut(s)	489
Eco47I	GGWCC	1 cut(s)	389
Eco53kI	GAGCTC	1 cut(s)	619
Eco88I	CYCGRG	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	619
EcoRV	GATATC	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	2 cut(s)	643, 679
FaiI	YATR	7 cut(s)	33, 47, 123, 147, 209, 641, 677
FatI	CATG	2 cut(s)	639, 675
Fnu4HI	GCNGC	2 cut(s)	342, 441
FokI	GGATG	3 cut(s)	296, 532, 623
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	2 cut(s)	342, 441
FspBI	CTAG	3 cut(s)	224, 228, 692
GluI	GCNGC	2 cut(s)	342, 441
GsaI	CCCAGC	1 cut(s)	337
HaeIII	GGCC	4 cut(s)	138, 498, 638, 662
HapII	CCGG	3 cut(s)	398, 501, 681
Hin1II	CATG	2 cut(s)	643, 679
HinfI	GANTC	3 cut(s)	405, 581, 597
HpaII	CCGG	3 cut(s)	398, 501, 681
HphI	GGTGA	1 cut(s)	658
Hpy166II	GTNNAC	2 cut(s)	109, 389
Hpy188I	TCNGA	5 cut(s)	262, 370, 486, 592, 610
Hpy188III	TCNNGA	2 cut(s)	193, 622
Hpy8I	GTNNAC	2 cut(s)	109, 389
Hpy99I	CGWCG	1 cut(s)	596
HpyAV	CCTTC	2 cut(s)	624, 673
HpyCH4III	ACNGT	2 cut(s)	310, 577
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	5 cut(s)	88, 341, 380, 440, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	2 cut(s)	272, 483
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	643, 679
KpnI	GGTACC	1 cut(s)	509
Kzo9I	GATC	1 cut(s)	262
Lsp1109I	GCAGC	2 cut(s)	353, 452
LweI	GCATC	2 cut(s)	554, 601
MaeI	CTAG	3 cut(s)	224, 228, 692
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	2 cut(s)	310, 571
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	621, 691
MlsI	TGGCCA	1 cut(s)	638
MluCI	AATT	3 cut(s)	162, 236, 254
MluNI	TGGCCA	1 cut(s)	638
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	2 cut(s)	516, 615
MnlI	CCTC	5 cut(s)	79, 177, 331, 567, 616
Mox20I	TGGCCA	1 cut(s)	638
MscI	TGGCCA	1 cut(s)	638
Msp20I	TGGCCA	1 cut(s)	638
MspI	CCGG	3 cut(s)	398, 501, 681
MspR9I	CCNGG	2 cut(s)	501, 502
Mva1269I	GAATGC	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	446
NciI	CCSGG	2 cut(s)	501, 502
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	2 cut(s)	643, 679
NlaIV	GGNNCC	3 cut(s)	499, 507, 555
NmuCI	GTSAC	1 cut(s)	571
PctI	GAATGC	1 cut(s)	380
PfeI	GAWTC	2 cut(s)	405, 597
PkrI	GCNGC	2 cut(s)	343, 442
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
Psp124BI	GAGCTC	1 cut(s)	621
PspFI	CCCAGC	1 cut(s)	333
PspN4I	GGNNCC	3 cut(s)	499, 507, 555
PspPI	GGNCC	2 cut(s)	389, 497
PstI	CTGCAG	1 cut(s)	343
RsaI	GTAC	3 cut(s)	55, 507, 674
RsaNI	GTAC	3 cut(s)	54, 506, 673
SacI	GAGCTC	1 cut(s)	621
SatI	GCNGC	2 cut(s)	342, 441
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	2 cut(s)	389, 497
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	2 cut(s)	501, 502
SduI	GDGCHC	2 cut(s)	621, 691
SfaNI	GCATC	2 cut(s)	554, 601
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	389
SmaI	CCCGGG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	162, 236, 254
SspMI	CTAG	3 cut(s)	224, 228, 692
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	2 cut(s)	499, 500
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	310, 577
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	1 cut(s)	453
TasI	AATT	3 cut(s)	162, 236, 254
TatI	WGTACW	1 cut(s)	672
TfiI	GAWTC	2 cut(s)	405, 597
TscAI	CASTG	3 cut(s)	182, 391, 691
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	2 cut(s)	341, 440
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	4 cut(s)	12, 144, 267, 505
TspGWI	ACGGA	2 cut(s)	609, 642
TspMI	CCCGGG	1 cut(s)	500
TspRI	CASTG	3 cut(s)	182, 391, 691
VpaK11BI	GGWCC	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XmaI	CCCGGG	1 cut(s)	500
XspI	CTAG	3 cut(s)	224, 228, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.