transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0131821 RchiOBHm_Chr2g0162631 RchiOBHm_Chr4g0410331 RchiOBHm_Chr4g0420191 RchiOBHm_Chr5g0010521 |
| rosa_laevigata | RLG00000016801 RLG00000023312 |
| rosa_roxburghii | Rroxscaffold_2G00085420 |
| rosa_samantha | Rh1AG135000 Rh1AG162200 Rh1AG256800 Rh1AG295900 Rh1CG151700 Rh1DG235900 Rh2BG384100 Rh2CG632200 Rh3BG375400 Rh3CG255600 Rh5AG535000 Rh5DG090700 Rh5DG473500 Rh6AG293000 Rh7BG431900 |
| rosa_wichuraiana | Rw2G003760 Rw5G026980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 68 |
| AgsI | TTSAA | 4 cut(s) | 124, 136, 181, 314 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 315, 347 |
| AluBI | AGCT | 3 cut(s) | 145, 192, 303 |
| AluI | AGCT | 3 cut(s) | 145, 192, 303 |
| Alw21I | GWGCWC | 2 cut(s) | 147, 231 |
| Alw44I | GTGCAC | 1 cut(s) | 227 |
| AoxI | GGCC | 1 cut(s) | 47 |
| ApaLI | GTGCAC | 1 cut(s) | 227 |
| ApeKI | GCWGC | 1 cut(s) | 381 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 87 |
| AspS9I | GGNCC | 1 cut(s) | 47 |
| AsuHPI | GGTGA | 1 cut(s) | 224 |
| BaeGI | GKGCMC | 1 cut(s) | 231 |
| BanII | GRGCYC | 1 cut(s) | 147 |
| Bbv12I | GWGCWC | 2 cut(s) | 147, 231 |
| BbvI | GCAGC | 1 cut(s) | 368 |
| BccI | CCATC | 1 cut(s) | 272 |
| BfmI | CTRYAG | 1 cut(s) | 105 |
| BisI | GCNGC | 1 cut(s) | 382 |
| BlsI | GCNGC | 1 cut(s) | 383 |
| BmgT120I | GGNCC | 1 cut(s) | 47 |
| BmiI | GGNNCC | 1 cut(s) | 427 |
| BmsI | GCATC | 1 cut(s) | 379 |
| BsaBI | GATNNNNATC | 1 cut(s) | 84 |
| BsaJI | CCNNGG | 1 cut(s) | 161 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 134, 164 |
| Bse1I | ACTGG | 2 cut(s) | 128, 296 |
| Bse8I | GATNNNNATC | 1 cut(s) | 84 |
| BseDI | CCNNGG | 1 cut(s) | 161 |
| BseGI | GGATG | 1 cut(s) | 72 |
| BseJI | GATNNNNATC | 1 cut(s) | 84 |
| BseMII | CTCAG | 1 cut(s) | 373 |
| BseNI | ACTGG | 2 cut(s) | 128, 296 |
| BseRI | GAGGAG | 4 cut(s) | 155, 426, 429, 432 |
| BseSI | GKGCMC | 1 cut(s) | 231 |
| BseXI | GCAGC | 1 cut(s) | 368 |
| Bsh1285I | CGRYCG | 2 cut(s) | 38, 388 |
| BshFI | GGCC | 1 cut(s) | 49 |
| BsiEI | CGRYCG | 2 cut(s) | 38, 388 |
| BsiHKAI | GWGCWC | 2 cut(s) | 147, 231 |
| BsnI | GGCC | 1 cut(s) | 49 |
| Bsp1286I | GDGCHC | 2 cut(s) | 147, 231 |
| Bsp143I | GATC | 4 cut(s) | 8, 19, 56, 385 |
| BspANI | GGCC | 1 cut(s) | 49 |
| BspCNI | CTCAG | 1 cut(s) | 372 |
| BspLI | GGNNCC | 1 cut(s) | 427 |
| BsrI | ACTGG | 2 cut(s) | 128, 296 |
| BssECI | CCNNGG | 1 cut(s) | 161 |
| BssMI | GATC | 4 cut(s) | 8, 19, 56, 385 |
| BssT1I | CCWWGG | 1 cut(s) | 161 |
| Bst4CI | ACNGT | 3 cut(s) | 36, 106, 199 |
| Bst6I | CTCTTC | 2 cut(s) | 57, 360 |
| BstC8I | GCNNGC | 1 cut(s) | 379 |
| BstDEI | CTNAG | 1 cut(s) | 359 |
| BstF5I | GGATG | 1 cut(s) | 72 |
| BstKTI | GATC | 4 cut(s) | 11, 22, 59, 388 |
| BstMBI | GATC | 4 cut(s) | 8, 19, 56, 385 |
| BstMCI | CGRYCG | 2 cut(s) | 38, 388 |
| BstNSI | RCATGY | 1 cut(s) | 381 |
| BstSFI | CTRYAG | 1 cut(s) | 105 |
| BstSLI | GKGCMC | 1 cut(s) | 231 |
| BstV1I | GCAGC | 1 cut(s) | 368 |
| BsuRI | GGCC | 1 cut(s) | 49 |
| BtsCI | GGATG | 1 cut(s) | 72 |
| BtsIMutI | CAGTG | 1 cut(s) | 289 |
| Cac8I | GCNNGC | 1 cut(s) | 379 |
| Cfr13I | GGNCC | 1 cut(s) | 47 |
| Csp6I | GTAC | 1 cut(s) | 67 |
| CviAII | CATG | 4 cut(s) | 148, 186, 335, 378 |
| CviJI | RGCY | 5 cut(s) | 49, 145, 192, 303, 428 |
| CviKI_1 | RGCY | 5 cut(s) | 49, 145, 192, 303, 428 |
| CviQI | GTAC | 1 cut(s) | 67 |
| DdeI | CTNAG | 1 cut(s) | 359 |
| DpnI | GATC | 4 cut(s) | 10, 21, 58, 387 |
| DpnII | GATC | 4 cut(s) | 8, 19, 56, 385 |
| Eam1104I | CTCTTC | 2 cut(s) | 57, 360 |
| EarI | CTCTTC | 2 cut(s) | 57, 360 |
| Ecl136II | GAGCTC | 1 cut(s) | 145 |
| Eco130I | CCWWGG | 1 cut(s) | 161 |
| Eco24I | GRGCYC | 1 cut(s) | 147 |
| Eco53kI | GAGCTC | 1 cut(s) | 145 |
| EcoICRI | GAGCTC | 1 cut(s) | 145 |
| EcoT14I | CCWWGG | 1 cut(s) | 161 |
| EcoT38I | GRGCYC | 1 cut(s) | 147 |
| ErhI | CCWWGG | 1 cut(s) | 161 |
| FaeI | CATG | 4 cut(s) | 151, 189, 338, 381 |
| FaiI | YATR | 7 cut(s) | 44, 149, 171, 187, 336, 350, 379 |
| FatI | CATG | 4 cut(s) | 147, 185, 334, 377 |
| Fnu4HI | GCNGC | 1 cut(s) | 382 |
| FokI | GGATG | 1 cut(s) | 59 |
| FriOI | GRGCYC | 1 cut(s) | 147 |
| Fsp4HI | GCNGC | 1 cut(s) | 382 |
| GluI | GCNGC | 1 cut(s) | 382 |
| HaeIII | GGCC | 1 cut(s) | 49 |
| Hin1II | CATG | 4 cut(s) | 151, 189, 338, 381 |
| HinfI | GANTC | 1 cut(s) | 124 |
| HphI | GGTGA | 1 cut(s) | 224 |
| Hpy166II | GTNNAC | 2 cut(s) | 229, 398 |
| Hpy188I | TCNGA | 3 cut(s) | 13, 61, 362 |
| Hpy188III | TCNNGA | 2 cut(s) | 23, 133 |
| Hpy8I | GTNNAC | 2 cut(s) | 229, 398 |
| Hpy99I | CGWCG | 2 cut(s) | 55, 236 |
| HpyAV | CCTTC | 3 cut(s) | 175, 253, 416 |
| HpyCH4III | ACNGT | 3 cut(s) | 36, 106, 199 |
| HpyCH4V | TGCA | 1 cut(s) | 229 |
| HpyF3I | CTNAG | 1 cut(s) | 359 |
| Hsp92II | CATG | 4 cut(s) | 151, 189, 338, 381 |
| Kzo9I | GATC | 4 cut(s) | 8, 19, 56, 385 |
| LmnI | GCTCC | 4 cut(s) | 142, 189, 300, 425 |
| LpnPI | CCDG | 7 cut(s) | 19, 90, 141, 192, 277, 306, 415 |
| Lsp1109I | GCAGC | 1 cut(s) | 368 |
| LweI | GCATC | 1 cut(s) | 379 |
| MaeIII | GTNAC | 4 cut(s) | 116, 202, 287, 316 |
| MalI | GATC | 4 cut(s) | 10, 21, 58, 387 |
| MboI | GATC | 4 cut(s) | 8, 19, 56, 385 |
| MboII | GAAGA | 3 cut(s) | 74, 80, 347 |
| MhlI | GDGCHC | 2 cut(s) | 147, 231 |
| MluCI | AATT | 3 cut(s) | 176, 273, 309 |
| MmeI | TCCRAC | 1 cut(s) | 250 |
| MnlI | CCTC | 4 cut(s) | 133, 404, 407, 410 |
| MroXI | GAANNNNTTC | 1 cut(s) | 87 |
| NdeII | GATC | 4 cut(s) | 8, 19, 56, 385 |
| NlaIII | CATG | 4 cut(s) | 151, 189, 338, 381 |
| NlaIV | GGNNCC | 1 cut(s) | 427 |
| NmuCI | GTSAC | 1 cut(s) | 287 |
| NspI | RCATGY | 1 cut(s) | 381 |
| PaeI | GCATGC | 1 cut(s) | 381 |
| PdmI | GAANNNNTTC | 1 cut(s) | 87 |
| PfeI | GAWTC | 1 cut(s) | 124 |
| PkrI | GCNGC | 1 cut(s) | 383 |
| Ple19I | CGATCG | 1 cut(s) | 388 |
| Psp124BI | GAGCTC | 1 cut(s) | 147 |
| PspN4I | GGNNCC | 1 cut(s) | 427 |
| PspPI | GGNCC | 1 cut(s) | 47 |
| PvuI | CGATCG | 1 cut(s) | 388 |
| RsaI | GTAC | 1 cut(s) | 68 |
| RsaNI | GTAC | 1 cut(s) | 67 |
| SacI | GAGCTC | 1 cut(s) | 147 |
| SatI | GCNGC | 1 cut(s) | 382 |
| Sau3AI | GATC | 4 cut(s) | 8, 19, 56, 385 |
| Sau96I | GGNCC | 1 cut(s) | 47 |
| SduI | GDGCHC | 2 cut(s) | 147, 231 |
| SetI | ASST | 6 cut(s) | 147, 194, 211, 222, 264, 305 |
| SfaNI | GCATC | 1 cut(s) | 379 |
| SfcI | CTRYAG | 1 cut(s) | 105 |
| SphI | GCATGC | 1 cut(s) | 381 |
| Sse9I | AATT | 3 cut(s) | 176, 273, 309 |
| SstI | GAGCTC | 1 cut(s) | 147 |
| StyI | CCWWGG | 1 cut(s) | 161 |
| TaaI | ACNGT | 3 cut(s) | 36, 106, 199 |
| TasI | AATT | 3 cut(s) | 176, 273, 309 |
| TfiI | GAWTC | 1 cut(s) | 124 |
| TscAI | CASTG | 1 cut(s) | 296 |
| TseFI | GTSAC | 1 cut(s) | 287 |
| TseI | GCWGC | 1 cut(s) | 381 |
| Tsp45I | GTSAC | 1 cut(s) | 287 |
| TspDTI | ATGAA | 3 cut(s) | 96, 272, 323 |
| TspRI | CASTG | 1 cut(s) | 296 |
| VneI | GTGCAC | 1 cut(s) | 227 |
| XceI | RCATGY | 1 cut(s) | 381 |
| XmnI | GAANNNNTTC | 1 cut(s) | 87 |