transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0131821 RchiOBHm_Chr2g0162631 RchiOBHm_Chr4g0410331 RchiOBHm_Chr4g0420191 RchiOBHm_Chr5g0010521 |
| rosa_laevigata | RLG00000016801 RLG00000023312 |
| rosa_roxburghii | Rroxscaffold_2G00085420 |
| rosa_samantha | Rh1AG135000 Rh1AG162200 Rh1AG256800 Rh1AG295900 Rh1CG151700 Rh1DG235900 Rh2BG384100 Rh2CG632200 Rh3BG375400 Rh3CG255600 Rh5AG535000 Rh5DG090700 Rh5DG473500 Rh6AG293000 Rh7BG431900 |
| rosa_wichuraiana | Rw2G003760 Rw5G026980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 1 cut(s) | 170 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 171, 203 |
| AluBI | AGCT | 1 cut(s) | 159 |
| AluI | AGCT | 1 cut(s) | 159 |
| Alw21I | GWGCWC | 1 cut(s) | 87 |
| Alw44I | GTGCAC | 1 cut(s) | 83 |
| ApaLI | GTGCAC | 1 cut(s) | 83 |
| ApeKI | GCWGC | 1 cut(s) | 237 |
| AsuHPI | GGTGA | 1 cut(s) | 80 |
| BaeGI | GKGCMC | 1 cut(s) | 87 |
| Bbv12I | GWGCWC | 1 cut(s) | 87 |
| BbvI | GCAGC | 1 cut(s) | 224 |
| BccI | CCATC | 1 cut(s) | 128 |
| BglII | AGATCT | 1 cut(s) | 19 |
| BisI | GCNGC | 1 cut(s) | 238 |
| BlsI | GCNGC | 1 cut(s) | 239 |
| BmiI | GGNNCC | 1 cut(s) | 283 |
| BmsI | GCATC | 1 cut(s) | 235 |
| BsaBI | GATNNNNATC | 1 cut(s) | 24 |
| Bse1I | ACTGG | 1 cut(s) | 152 |
| Bse8I | GATNNNNATC | 1 cut(s) | 24 |
| BseGI | GGATG | 1 cut(s) | 25 |
| BseJI | GATNNNNATC | 1 cut(s) | 24 |
| BseMII | CTCAG | 1 cut(s) | 229 |
| BseNI | ACTGG | 1 cut(s) | 152 |
| BseRI | GAGGAG | 3 cut(s) | 282, 285, 288 |
| BseSI | GKGCMC | 1 cut(s) | 87 |
| BseXI | GCAGC | 1 cut(s) | 224 |
| Bsh1285I | CGRYCG | 1 cut(s) | 244 |
| BsiEI | CGRYCG | 1 cut(s) | 244 |
| BsiHKAI | GWGCWC | 1 cut(s) | 87 |
| Bsp1286I | GDGCHC | 1 cut(s) | 87 |
| Bsp143I | GATC | 2 cut(s) | 19, 241 |
| BspCNI | CTCAG | 1 cut(s) | 228 |
| BspLI | GGNNCC | 1 cut(s) | 283 |
| BsrI | ACTGG | 1 cut(s) | 152 |
| BssMI | GATC | 2 cut(s) | 19, 241 |
| Bst6I | CTCTTC | 1 cut(s) | 216 |
| BstC8I | GCNNGC | 1 cut(s) | 235 |
| BstDEI | CTNAG | 1 cut(s) | 215 |
| BstF5I | GGATG | 1 cut(s) | 25 |
| BstKTI | GATC | 2 cut(s) | 22, 244 |
| BstMBI | GATC | 2 cut(s) | 19, 241 |
| BstMCI | CGRYCG | 1 cut(s) | 244 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 53 |
| BstNSI | RCATGY | 1 cut(s) | 237 |
| BstSLI | GKGCMC | 1 cut(s) | 87 |
| BstV1I | GCAGC | 1 cut(s) | 224 |
| BstX2I | RGATCY | 1 cut(s) | 19 |
| BstYI | RGATCY | 1 cut(s) | 19 |
| BtsCI | GGATG | 1 cut(s) | 25 |
| BtsIMutI | CAGTG | 1 cut(s) | 145 |
| Cac8I | GCNNGC | 1 cut(s) | 235 |
| CviAII | CATG | 2 cut(s) | 191, 234 |
| CviJI | RGCY | 2 cut(s) | 159, 284 |
| CviKI_1 | RGCY | 2 cut(s) | 159, 284 |
| DdeI | CTNAG | 1 cut(s) | 215 |
| DpnI | GATC | 2 cut(s) | 21, 243 |
| DpnII | GATC | 2 cut(s) | 19, 241 |
| Eam1104I | CTCTTC | 1 cut(s) | 216 |
| EarI | CTCTTC | 1 cut(s) | 216 |
| FaeI | CATG | 2 cut(s) | 194, 237 |
| FaiI | YATR | 3 cut(s) | 192, 206, 235 |
| FatI | CATG | 2 cut(s) | 190, 233 |
| Fnu4HI | GCNGC | 1 cut(s) | 238 |
| FokI | GGATG | 1 cut(s) | 12 |
| Fsp4HI | GCNGC | 1 cut(s) | 238 |
| GluI | GCNGC | 1 cut(s) | 238 |
| Hin1II | CATG | 2 cut(s) | 194, 237 |
| HphI | GGTGA | 1 cut(s) | 80 |
| Hpy166II | GTNNAC | 2 cut(s) | 85, 254 |
| Hpy188I | TCNGA | 2 cut(s) | 19, 218 |
| Hpy8I | GTNNAC | 2 cut(s) | 85, 254 |
| Hpy99I | CGWCG | 1 cut(s) | 92 |
| HpyAV | CCTTC | 2 cut(s) | 109, 272 |
| HpyCH4V | TGCA | 1 cut(s) | 85 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 53 |
| HpyF3I | CTNAG | 1 cut(s) | 215 |
| Hsp92II | CATG | 2 cut(s) | 194, 237 |
| Kzo9I | GATC | 2 cut(s) | 19, 241 |
| LmnI | GCTCC | 2 cut(s) | 156, 281 |
| LpnPI | CCDG | 4 cut(s) | 48, 133, 162, 271 |
| Lsp1109I | GCAGC | 1 cut(s) | 224 |
| LweI | GCATC | 1 cut(s) | 235 |
| MaeIII | GTNAC | 3 cut(s) | 58, 143, 172 |
| MalI | GATC | 2 cut(s) | 21, 243 |
| MboI | GATC | 2 cut(s) | 19, 241 |
| MboII | GAAGA | 3 cut(s) | 6, 14, 203 |
| MflI | RGATCY | 1 cut(s) | 19 |
| MhlI | GDGCHC | 1 cut(s) | 87 |
| MluCI | AATT | 2 cut(s) | 129, 165 |
| MmeI | TCCRAC | 1 cut(s) | 106 |
| MnlI | CCTC | 3 cut(s) | 260, 263, 266 |
| MseI | TTAA | 1 cut(s) | 35 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 53 |
| NdeII | GATC | 2 cut(s) | 19, 241 |
| NlaIII | CATG | 2 cut(s) | 194, 237 |
| NlaIV | GGNNCC | 1 cut(s) | 283 |
| NmuCI | GTSAC | 1 cut(s) | 143 |
| NspI | RCATGY | 1 cut(s) | 237 |
| PaeI | GCATGC | 1 cut(s) | 237 |
| PkrI | GCNGC | 1 cut(s) | 239 |
| Ple19I | CGATCG | 1 cut(s) | 244 |
| PspN4I | GGNNCC | 1 cut(s) | 283 |
| PsuI | RGATCY | 1 cut(s) | 19 |
| PvuI | CGATCG | 1 cut(s) | 244 |
| SaqAI | TTAA | 1 cut(s) | 35 |
| SatI | GCNGC | 1 cut(s) | 238 |
| Sau3AI | GATC | 2 cut(s) | 19, 241 |
| SduI | GDGCHC | 1 cut(s) | 87 |
| SetI | ASST | 4 cut(s) | 67, 78, 120, 161 |
| SfaNI | GCATC | 1 cut(s) | 235 |
| SphI | GCATGC | 1 cut(s) | 237 |
| Sse9I | AATT | 2 cut(s) | 129, 165 |
| TasI | AATT | 2 cut(s) | 129, 165 |
| Tru1I | TTAA | 1 cut(s) | 35 |
| Tru9I | TTAA | 1 cut(s) | 35 |
| TscAI | CASTG | 1 cut(s) | 152 |
| TseFI | GTSAC | 1 cut(s) | 143 |
| TseI | GCWGC | 1 cut(s) | 237 |
| Tsp45I | GTSAC | 1 cut(s) | 143 |
| TspDTI | ATGAA | 3 cut(s) | 14, 128, 179 |
| TspRI | CASTG | 1 cut(s) | 152 |
| VneI | GTGCAC | 1 cut(s) | 83 |
| XceI | RCATGY | 1 cut(s) | 237 |