Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007546

Physical Location & Seq

Genomic Coordinates Reverse (-)

52685928 .. 52687660

Gene Structure 1733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG295900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGACCAGATCAGACACCGATCAAGACACCAAACGGTCGGGTATAGGGCCGACGAGATCGGAAGAGTACGGCATCCCCGATGAATATCTTCGTAGAAAGACAACTATAGTAAGGAGTAACTTGAATCCAGTCTTGAATGAGGAGCTCATGTTGTCTGTTCCTTGGCGATATGGAGAATTGAAGGCATGGAGCTTTACAGTTGATCTAAAGCTTAGTCTCAGAAAAATTGATGCTTTGCCTTTGTGGATTAGCTTTTGGTTGCCTTGGAGGAGCAGGAGACTACTTTTCTCAAACAGTTTGATCAAGCTCCAAAAAAGCTTTAGCCAAGTTCATAAGTTCAAGATTTACGGCAAGGATTTACTACAGTTAATCAGGAAGCTAAAGCATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009555 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048229 GO:0048856 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

130

Amino Acids

15.51

Weight (kDa)

10.14

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131821 RchiOBHm_Chr2g0162631 RchiOBHm_Chr4g0410331 RchiOBHm_Chr4g0420191 RchiOBHm_Chr5g0010521
rosa_laevigata	RLG00000016801 RLG00000023312
rosa_roxburghii	Rroxscaffold_2G00085420
rosa_samantha	Rh1AG135000 Rh1AG162200 Rh1AG256800 Rh1AG295900 Rh1CG151700 Rh1DG235900 Rh2BG384100 Rh2CG632200 Rh3BG375400 Rh3CG255600 Rh5AG535000 Rh5DG090700 Rh5DG473500 Rh6AG293000 Rh7BG431900
rosa_wichuraiana	Rw2G003760 Rw5G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	68
AgsI	TTSAA	4 cut(s)	124, 136, 181, 340
AluBI	AGCT	7 cut(s)	145, 192, 211, 252, 307, 318, 379
AluI	AGCT	7 cut(s)	145, 192, 211, 252, 307, 318, 379
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	221, 271
AoxI	GGCC	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	147
BceAI	ACGGC	2 cut(s)	85, 364
BclI	TGATCA	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	221, 271
BfmI	CTRYAG	2 cut(s)	105, 362
BmgT120I	GGNCC	1 cut(s)	47
BmsI	GCATC	2 cut(s)	81, 220
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	161, 263
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bse1I	ACTGG	1 cut(s)	128
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	161, 263
BseGI	GGATG	1 cut(s)	72
BseJI	GATNNNNATC	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	2 cut(s)	155, 283
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	147
BsmAI	GTCTC	2 cut(s)	221, 271
BsnI	GGCC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	5 cut(s)	8, 19, 56, 202, 300
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	161, 263
BssMI	GATC	5 cut(s)	8, 19, 56, 202, 300
BssT1I	CCWWGG	2 cut(s)	161, 263
Bst4CI	ACNGT	4 cut(s)	36, 199, 296, 366
Bst6I	CTCTTC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	212, 218
BstF5I	GGATG	1 cut(s)	72
BstKTI	GATC	5 cut(s)	11, 22, 59, 205, 303
BstMAI	GTCTC	2 cut(s)	221, 271
BstMBI	GATC	5 cut(s)	8, 19, 56, 202, 300
BstMCI	CGRYCG	1 cut(s)	38
BstSFI	CTRYAG	2 cut(s)	105, 362
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	2 cut(s)	148, 186
CviJI	RGCY	9 cut(s)	49, 145, 192, 211, 252, 307, 318, 324, 379
CviKI_1	RGCY	9 cut(s)	49, 145, 192, 211, 252, 307, 318, 324, 379
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	2 cut(s)	212, 218
DpnI	GATC	5 cut(s)	10, 21, 58, 204, 302
DpnII	GATC	5 cut(s)	8, 19, 56, 202, 300
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	2 cut(s)	161, 263
Eco24I	GRGCYC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	161, 263
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	2 cut(s)	161, 263
FaeI	CATG	2 cut(s)	151, 189
FaiI	YATR	6 cut(s)	44, 107, 149, 171, 187, 333
FatI	CATG	2 cut(s)	147, 185
FbaI	TGATCA	1 cut(s)	300
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	49
Hin1II	CATG	2 cut(s)	151, 189
HindIII	AAGCTT	2 cut(s)	209, 316
HinfI	GANTC	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	13, 61, 221
Hpy188III	TCNNGA	4 cut(s)	23, 133, 340, 373
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	4 cut(s)	36, 199, 296, 366
HpyF3I	CTNAG	2 cut(s)	212, 218
Hsp92II	CATG	2 cut(s)	151, 189
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	5 cut(s)	8, 19, 56, 202, 300
LmnI	GCTCC	4 cut(s)	142, 189, 270, 312
LpnPI	CCDG	4 cut(s)	19, 141, 259, 358
LweI	GCATC	2 cut(s)	81, 220
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	5 cut(s)	10, 21, 58, 204, 302
MboI	GATC	5 cut(s)	8, 19, 56, 202, 300
MboII	GAAGA	2 cut(s)	74, 80
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	2 cut(s)	176, 225
MnlI	CCTC	2 cut(s)	133, 261
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	2 cut(s)	368, 391
NdeII	GATC	5 cut(s)	8, 19, 56, 202, 300
NlaIII	CATG	2 cut(s)	151, 189
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	47
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	368, 391
Sau3AI	GATC	5 cut(s)	8, 19, 56, 202, 300
Sau96I	GGNCC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	7 cut(s)	147, 194, 213, 254, 309, 320, 381
SfaNI	GCATC	2 cut(s)	81, 220
SfcI	CTRYAG	2 cut(s)	105, 362
Sse9I	AATT	2 cut(s)	176, 225
SstI	GAGCTC	1 cut(s)	147
StyI	CCWWGG	2 cut(s)	161, 263
TaaI	ACNGT	4 cut(s)	36, 199, 296, 366
TasI	AATT	2 cut(s)	176, 225
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	368, 391
Tru9I	TTAA	2 cut(s)	368, 391
TspDTI	ATGAA	2 cut(s)	96, 320
XmnI	GAANNNNTTC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.