Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007546

Physical Location & Seq

Genomic Coordinates Reverse (-)

3465565 .. 3466523

Gene Structure 959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G003760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGAGGCGGCAGATCTACGATATCTATATGTCCCCTAGAGCGTTGGGGTTCTTGCGCGAAAGGCAAAGAATCAGTATTCTTGGAAAGGATTTGGGGCAATCTCTAATGCTATACATGAGCTTAAGATCTTCAACGGTTTTGCTATCTTCAGATCTTCATCCCCTTTTAAGACTTTGCGCAATAAGAGCAGTAACAGGTGGTGATAAGGTCTTTGTGCACGACGAGAAATCGCAATCCAAGACAATGAAAGTAGTAGTTGGAATTGATGGGGTGGGTCACTGGCAAAGGAGCTTCCAAATTGAAGTAACAGGAAATGATGTTCATGTAGTTTTGCTCATAACTCTTCTTAGAAAAAAGAATCAAGCATGCTGCGATCGTCAATGTGAACCCTGTCAAAGAGGAGGAGGAGAAGGAGCCCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.95

Weight (kDa)

9.3

Isoelectric Point (pI)

60.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0131821 RchiOBHm_Chr2g0162631 RchiOBHm_Chr4g0410331 RchiOBHm_Chr4g0420191 RchiOBHm_Chr5g0010521
rosa_laevigata	RLG00000016801 RLG00000023312
rosa_roxburghii	Rroxscaffold_2G00085420
rosa_samantha	Rh1AG135000 Rh1AG162200 Rh1AG256800 Rh1AG295900 Rh1CG151700 Rh1DG235900 Rh2BG384100 Rh2CG632200 Rh3BG375400 Rh3CG255600 Rh5AG535000 Rh5DG090700 Rh5DG473500 Rh6AG293000 Rh7BG431900
rosa_wichuraiana	Rw2G003760 Rw5G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	181
AccII	CGCG	1 cut(s)	60
AciI	CCGC	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	135
AflII	CTTAAG	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	135, 305
AloI	GAACNNNNNNTCC	2 cut(s)	306, 338
AluBI	AGCT	2 cut(s)	123, 294
AluI	AGCT	2 cut(s)	123, 294
Alw21I	GWGCWC	1 cut(s)	222
Alw44I	GTGCAC	1 cut(s)	218
ApaLI	GTGCAC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	372
AspLEI	GCGC	2 cut(s)	60, 182
AsuHPI	GGTGA	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	124
BglII	AGATCT	3 cut(s)	15, 128, 154
BisI	GCNGC	2 cut(s)	11, 373
BlsI	GCNGC	2 cut(s)	12, 374
BmiI	GGNNCC	1 cut(s)	418
BsaBI	GATNNNNATC	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	159
BseGI	GGATG	1 cut(s)	160
BseJI	GATNNNNATC	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	3 cut(s)	417, 420, 423
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	359
Bsh1236I	CGCG	1 cut(s)	60
Bsh1285I	CGRYCG	1 cut(s)	379
BsiEI	CGRYCG	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	19
Bsp1286I	GDGCHC	2 cut(s)	222, 421
Bsp143I	GATC	4 cut(s)	15, 128, 154, 376
BspACI	CCGC	1 cut(s)	10
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	418
BspTI	CTTAAG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	287
BssMI	GATC	4 cut(s)	15, 128, 154, 376
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	60, 182
BstKTI	GATC	4 cut(s)	18, 131, 157, 379
BstMBI	GATC	4 cut(s)	15, 128, 154, 376
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 188
BstNSI	RCATGY	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	222
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	359
BstX2I	RGATCY	3 cut(s)	15, 128, 154
BstYI	RGATCY	3 cut(s)	15, 128, 154
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	370
CfoI	GCGC	2 cut(s)	60, 182
CviAII	CATG	3 cut(s)	118, 326, 369
CviJI	RGCY	3 cut(s)	123, 294, 419
CviKI_1	RGCY	3 cut(s)	123, 294, 419
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	4 cut(s)	17, 130, 156, 378
DpnII	GATC	4 cut(s)	15, 128, 154, 376
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	421
Eco32I	GATATC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	135
EcoRV	GATATC	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	421
FaeI	CATG	3 cut(s)	121, 329, 372
FaiI	YATR	7 cut(s)	30, 32, 115, 119, 327, 341, 370
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	3 cut(s)	117, 325, 368
Fnu4HI	GCNGC	2 cut(s)	11, 373
FokI	GGATG	1 cut(s)	147
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	2 cut(s)	11, 373
FspBI	CTAG	1 cut(s)	39
FspI	TGCGCA	1 cut(s)	181
GlaI	GCGC	2 cut(s)	59, 181
GluI	GCNGC	2 cut(s)	11, 373
HhaI	GCGC	2 cut(s)	60, 182
Hin1II	CATG	3 cut(s)	121, 329, 372
Hin6I	GCGC	2 cut(s)	58, 180
HinP1I	GCGC	2 cut(s)	58, 180
HinfI	GANTC	2 cut(s)	72, 361
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	220, 389
Hpy188I	TCNGA	1 cut(s)	154
Hpy8I	GTNNAC	2 cut(s)	220, 389
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 188
HpyF3I	CTNAG	1 cut(s)	350
Hsp92II	CATG	3 cut(s)	121, 329, 372
HspAI	GCGC	2 cut(s)	58, 180
Kzo9I	GATC	4 cut(s)	15, 128, 154, 376
LmnI	GCTCC	2 cut(s)	291, 416
LpnPI	CCDG	4 cut(s)	183, 268, 297, 406
Lsp1109I	GCAGC	1 cut(s)	359
MaeI	CTAG	1 cut(s)	39
MaeIII	GTNAC	3 cut(s)	193, 278, 307
MalI	GATC	4 cut(s)	17, 130, 156, 378
MboI	GATC	4 cut(s)	15, 128, 154, 376
MboII	GAAGA	4 cut(s)	123, 141, 149, 338
MflI	RGATCY	3 cut(s)	15, 128, 154
MhlI	GDGCHC	2 cut(s)	222, 421
MluCI	AATT	2 cut(s)	264, 300
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	3 cut(s)	395, 398, 401
MseI	TTAA	2 cut(s)	125, 170
MspCI	CTTAAG	1 cut(s)	124
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	64, 188
NdeII	GATC	4 cut(s)	15, 128, 154, 376
NlaIII	CATG	3 cut(s)	121, 329, 372
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	278
NsbI	TGCGCA	1 cut(s)	181
NspI	RCATGY	1 cut(s)	372
PaeI	GCATGC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	72, 361
PkrI	GCNGC	2 cut(s)	12, 374
Ple19I	CGATCG	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	418
PsuI	RGATCY	3 cut(s)	15, 128, 154
PvuI	CGATCG	1 cut(s)	379
SaqAI	TTAA	2 cut(s)	125, 170
SatI	GCNGC	2 cut(s)	11, 373
Sau3AI	GATC	4 cut(s)	15, 128, 154, 376
SduI	GDGCHC	2 cut(s)	222, 421
SetI	ASST	4 cut(s)	125, 202, 213, 296
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
SphI	GCATGC	1 cut(s)	372
Sse9I	AATT	2 cut(s)	264, 300
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	139
TasI	AATT	2 cut(s)	264, 300
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	72, 361
Tru1I	TTAA	2 cut(s)	125, 170
Tru9I	TTAA	2 cut(s)	125, 170
TscAI	CASTG	1 cut(s)	287
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	1 cut(s)	372
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	149, 263, 314
TspRI	CASTG	1 cut(s)	287
Vha464I	CTTAAG	1 cut(s)	124
VneI	GTGCAC	1 cut(s)	218
XceI	RCATGY	1 cut(s)	372
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.