Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005541

Physical Location & Seq

Genomic Coordinates Reverse (-)

37982371 .. 37984210

Gene Structure 1840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029393

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAAAAAAAGTGCAAGAGGTCAAGATGTGACCATGGTCAGGAGAGCACCAAAGCGTCCACTAAGGGTTGTTGACATACCCGTTGTGACCCCGATGAGTCTTGGACTAGTGAAGTATGCAGGCCAAGCCTGGTGTGACCTATCATCCTTGAGGAGGGTCAGTTCAGGAGCTGCACCACTGAGCAAAGAAGTGGCTGATGAGTTCAGACTGAAGTTTCCTTGGGTTGAGTTGAAGCCGGGATTTGCTGCTAAGATTGTGGATATTGAAACTGGACAGGCTTTGGAATCTTATAAGGAAGGAGACTTGTGGCTGAAGAGTCCAACTACAATGAAAGAGTATATGGGGAATGTGGTAGAAGCCATTGCTAGTATTGATGAAGATGGGTGGTTGAAACTGGTGATCTTTGTTATTTTGATGAGGGATGGACTGCTTTACATTGTTGATCGTATCAAGGAGTTCATCAAGCATAATGGATATCAGGTACAAAACTCAATTCATAGCACCAATGTAATGCTTTCCTTGGTTGAAGACGAAGAAGCAGGACAAATTCCAACGGCATATGTGGTGAGAGCAGCTAGTACTGAACTGAGCACTGAATACCAAGTCATTCAATTTGTTGCCGGCCAGGTGGTCCCCTACAAAAAAGTCAGACAAGTAGGGTTTATATCTGCCATTCCAAGATCAGCTGCAAGCAAAATCTTGAGGAAGGAACTTGTTAGTTTACAAAGCAAACAGCAAATGGCCGGTCTCCAGACTATAATGCCTTTTCCTGCTGGCCAACTTCTTTCAGTAGAACATAGTGAGAAAGAGGCTCCTCTAGAAAGTGAAATATCCGATGGATCGTCTGGTTATCCATTTATGGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

290

Amino Acids

32.04

Weight (kDa)

6.87

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06560
malus_domestica	MD02G1242900.v1.1 MD07G1073800.v1.1
prunus_persica	Prupe.2G091700_v2.0.a1
pyrus_communis	pycom02g20960
rosa_chinensis	RchiOBHm_Chr1g0334411 RchiOBHm_Chr1g0335091
rosa_laevigata	RLG00000029393 RLG00000029397 RLG00000029398
rosa_multiflora	Rmu_co8496191.1_g000001 Rmu_sc0002714.1_g000004 Rmu_ssc0000047.1_g000022
rosa_roxburghii	Rroxscaffold_4G00316160 Rroxscaffold_4G00316200 Rroxscaffold_4G00316870
rosa_rugosa	Rorug01G0119000 Rorug01G0119100 Rorug01G0119200
rosa_samantha	Rh1AG138600 Rh1AG141800 Rh1BG110300 Rh1BG111200 Rh1CG130600 Rh1CG133700 Rh1DG142900 Rh1DG146600 Rh1DG148100
rosa_wichuraiana	Rw0G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AclWI	GGATC	1 cut(s)	847
AcoI	YGGCCR	3 cut(s)	622, 741, 775
AcsI	RAATTY	1 cut(s)	546
AcuI	CTGAAG	2 cut(s)	230, 332
AfaI	GTAC	2 cut(s)	483, 580
AfiI	CCNNNNNNNGG	3 cut(s)	39, 153, 860
AgsI	TTSAA	5 cut(s)	232, 266, 391, 527, 611
AhlI	ACTAGT	1 cut(s)	106
AjnI	CCWGG	2 cut(s)	128, 624
AloI	GAACNNNNNNTCC	2 cut(s)	145, 177
AluBI	AGCT	3 cut(s)	170, 575, 686
AluI	AGCT	3 cut(s)	170, 575, 686
Alw21I	GWGCWC	2 cut(s)	49, 593
Alw26I	GTCTC	2 cut(s)	294, 752
AlwI	GGATC	1 cut(s)	847
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	4 cut(s)	121, 622, 741, 775
ApeKI	GCWGC	4 cut(s)	170, 245, 572, 686
ApoI	RAATTY	1 cut(s)	546
ArsI	GACNNNNNNTTYG	2 cut(s)	730, 762
AspS9I	GGNCC	1 cut(s)	631
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	409, 577
AvaII	GGWCC	1 cut(s)	631
BalI	TGGCCA	1 cut(s)	777
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	2 cut(s)	49, 593
BbvI	GCAGC	4 cut(s)	157, 232, 584, 673
BccI	CCATC	3 cut(s)	374, 416, 830
BceAI	ACGGC	1 cut(s)	570
BciT130I	CCWGG	2 cut(s)	130, 626
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	2 cut(s)	294, 752
BcuI	ACTAGT	1 cut(s)	106
BfaI	CTAG	4 cut(s)	107, 366, 576, 818
BisI	GCNGC	4 cut(s)	171, 246, 573, 687
BlsI	GCNGC	4 cut(s)	172, 247, 574, 688
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	3 cut(s)	130, 237, 626
Bme18I	GGWCC	1 cut(s)	631
BmgT120I	GGNCC	1 cut(s)	631
BmiI	GGNNCC	2 cut(s)	633, 813
BmrFI	CCNGG	3 cut(s)	130, 237, 626
BoxI	GACNNNNGTC	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	734
BpuEI	CTTGAG	2 cut(s)	169, 721
BpuMI	CCSGG	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	752
BsaJI	CCNNGG	3 cut(s)	33, 218, 519
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 153, 860
Bse118I	RCCGGY	2 cut(s)	620, 743
Bse1I	ACTGG	2 cut(s)	274, 399
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	130, 626
BseDI	CCNNGG	3 cut(s)	33, 218, 519
BseGI	GGATG	2 cut(s)	143, 427
BseLI	CCNNNNNNNGG	3 cut(s)	39, 153, 860
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	2 cut(s)	170, 578
BseNI	ACTGG	2 cut(s)	274, 399
BseRI	GAGGAG	2 cut(s)	166, 804
BseXI	GCAGC	4 cut(s)	157, 232, 584, 673
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	4 cut(s)	123, 624, 743, 777
BsiHKAI	GWGCWC	2 cut(s)	49, 593
BsiSI	CCGG	3 cut(s)	236, 621, 744
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	3 cut(s)	39, 153, 860
BsmAI	GTCTC	2 cut(s)	294, 752
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	4 cut(s)	123, 624, 743, 777
Bso31I	GGTCTC	1 cut(s)	752
Bsp1286I	GDGCHC	2 cut(s)	49, 593
Bsp143I	GATC	4 cut(s)	399, 442, 680, 839
Bsp19I	CCATGG	1 cut(s)	33
BspANI	GGCC	4 cut(s)	123, 624, 743, 777
BspCNI	CTCAG	2 cut(s)	171, 579
BspLI	GGNNCC	2 cut(s)	633, 813
BspPI	GGATC	1 cut(s)	847
BspTNI	GGTCTC	1 cut(s)	752
BsrDI	GCAATG	1 cut(s)	360
BsrFI	RCCGGY	2 cut(s)	620, 743
BsrI	ACTGG	2 cut(s)	274, 399
BssAI	RCCGGY	2 cut(s)	620, 743
BssECI	CCNNGG	3 cut(s)	33, 218, 519
BssMI	GATC	4 cut(s)	399, 442, 680, 839
BssT1I	CCWWGG	3 cut(s)	33, 218, 519
Bst2UI	CCWGG	2 cut(s)	130, 626
Bst6I	CTCTTC	1 cut(s)	308
BstC8I	GCNNGC	4 cut(s)	121, 622, 691, 775
BstDEI	CTNAG	4 cut(s)	62, 179, 249, 587
BstDSI	CCRYGG	1 cut(s)	33
BstENI	CCTNNNNNAGG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	143, 427
BstKTI	GATC	4 cut(s)	402, 445, 683, 842
BstMAI	GTCTC	2 cut(s)	294, 752
BstMBI	GATC	4 cut(s)	399, 442, 680, 839
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	2 cut(s)	130, 626
BstPAI	GACNNNNGTC	1 cut(s)	35
BstSCI	CCNGG	3 cut(s)	128, 235, 624
BstV1I	GCAGC	4 cut(s)	157, 232, 584, 673
BstV2I	GAAGAC	1 cut(s)	534
BsuRI	GGCC	4 cut(s)	123, 624, 743, 777
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	143, 427
BtsIMutI	CAGTG	2 cut(s)	176, 591
Cac8I	GCNNGC	4 cut(s)	121, 622, 691, 775
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr10I	RCCGGY	2 cut(s)	620, 743
Cfr13I	GGNCC	1 cut(s)	631
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	482, 579
CviAII	CATG	1 cut(s)	34
CviQI	GTAC	2 cut(s)	482, 579
DdeI	CTNAG	4 cut(s)	62, 179, 249, 587
DpnI	GATC	4 cut(s)	401, 444, 682, 841
DpnII	GATC	4 cut(s)	399, 442, 680, 839
EaeI	YGGCCR	3 cut(s)	622, 741, 775
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco130I	CCWWGG	3 cut(s)	33, 218, 519
Eco31I	GGTCTC	1 cut(s)	752
Eco32I	GATATC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	631
Eco57I	CTGAAG	2 cut(s)	230, 332
EcoNI	CCTNNNNNAGG	1 cut(s)	151
EcoRII	CCWGG	2 cut(s)	128, 624
EcoRV	GATATC	1 cut(s)	476
EcoT14I	CCWWGG	3 cut(s)	33, 218, 519
ErhI	CCWWGG	3 cut(s)	33, 218, 519
FaeI	CATG	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	1 cut(s)	33
FauNDI	CATATG	1 cut(s)	559
Fnu4HI	GCNGC	4 cut(s)	171, 246, 573, 687
FokI	GGATG	2 cut(s)	130, 434
Fsp4HI	GCNGC	4 cut(s)	171, 246, 573, 687
FspBI	CTAG	4 cut(s)	107, 366, 576, 818
GluI	GCNGC	4 cut(s)	171, 246, 573, 687
GsuI	CTGGAG	1 cut(s)	734
HaeIII	GGCC	4 cut(s)	123, 624, 743, 777
HapII	CCGG	3 cut(s)	236, 621, 744
HgaI	GACGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	3 cut(s)	97, 284, 316
HpaII	CCGG	3 cut(s)	236, 621, 744
HphI	GGTGA	2 cut(s)	409, 577
Hpy166II	GTNNAC	3 cut(s)	59, 73, 722
Hpy188I	TCNGA	3 cut(s)	206, 650, 835
Hpy188III	TCNNGA	6 cut(s)	23, 40, 165, 700, 751, 818
Hpy8I	GTNNAC	3 cut(s)	59, 73, 722
HpyAV	CCTTC	2 cut(s)	290, 700
HpyCH4V	TGCA	4 cut(s)	14, 119, 173, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	4 cut(s)	62, 179, 249, 587
Hsp92II	CATG	1 cut(s)	37
KroI	GCCGGC	1 cut(s)	620
KroNI	GCCGGC	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	399, 442, 680, 839
LmnI	GCTCC	2 cut(s)	167, 817
Lsp1109I	GCAGC	4 cut(s)	157, 232, 584, 673
MaeI	CTAG	4 cut(s)	107, 366, 576, 818
MaeIII	GTNAC	3 cut(s)	28, 85, 134
MalI	GATC	4 cut(s)	401, 444, 682, 841
MboI	GATC	4 cut(s)	399, 442, 680, 839
MboII	GAAGA	4 cut(s)	325, 389, 539, 545
MhlI	GDGCHC	2 cut(s)	49, 593
MlsI	TGGCCA	1 cut(s)	777
MluCI	AATT	3 cut(s)	492, 546, 611
MluNI	TGGCCA	1 cut(s)	777
MlyI	GAGTC	2 cut(s)	106, 325
MmeI	TCCRAC	2 cut(s)	344, 575
MnlI	CCTC	7 cut(s)	11, 144, 147, 411, 696, 802, 825
Mox20I	TGGCCA	1 cut(s)	777
MroNI	GCCGGC	1 cut(s)	620
MscI	TGGCCA	1 cut(s)	777
Msp20I	TGGCCA	1 cut(s)	777
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	3 cut(s)	236, 621, 744
MspR9I	CCNGG	3 cut(s)	130, 237, 626
MvaI	CCWGG	2 cut(s)	130, 626
MwoI	GCNNNNNNNGC	1 cut(s)	125
NaeI	GCCGGC	1 cut(s)	622
NciI	CCSGG	1 cut(s)	237
NcoI	CCATGG	1 cut(s)	33
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	4 cut(s)	399, 442, 680, 839
NgoMIV	GCCGGC	1 cut(s)	620
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	2 cut(s)	633, 813
NmuCI	GTSAC	3 cut(s)	28, 85, 134
PdiI	GCCGGC	1 cut(s)	622
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	4 cut(s)	172, 247, 574, 688
PleI	GAGTC	2 cut(s)	105, 324
PpsI	GAGTC	2 cut(s)	105, 324
PshAI	GACNNNNGTC	1 cut(s)	35
PsiI	TTATAA	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	128, 624
PspGI	CCWGG	2 cut(s)	128, 624
PspN4I	GGNNCC	2 cut(s)	633, 813
PspPI	GGNCC	1 cut(s)	631
PstNI	CAGNNNCTG	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	2 cut(s)	483, 580
RsaNI	GTAC	2 cut(s)	482, 579
SatI	GCNGC	4 cut(s)	171, 246, 573, 687
Sau3AI	GATC	4 cut(s)	399, 442, 680, 839
Sau96I	GGNCC	1 cut(s)	631
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	2 cut(s)	106, 325
ScrFI	CCNGG	3 cut(s)	130, 237, 626
SduI	GDGCHC	2 cut(s)	49, 593
SetI	ASST	7 cut(s)	22, 141, 172, 483, 577, 630, 688
SinI	GGWCC	1 cut(s)	631
SmlI	CTYRAG	2 cut(s)	148, 700
SmoI	CTYRAG	2 cut(s)	148, 700
SpeI	ACTAGT	1 cut(s)	106
Sse9I	AATT	3 cut(s)	492, 546, 611
SspMI	CTAG	4 cut(s)	107, 366, 576, 818
StyD4I	CCNGG	3 cut(s)	128, 235, 624
StyI	CCWWGG	3 cut(s)	33, 218, 519
TasI	AATT	3 cut(s)	492, 546, 611
TatI	WGTACW	1 cut(s)	578
TfiI	GAWTC	1 cut(s)	284
TscAI	CASTG	2 cut(s)	183, 598
TseFI	GTSAC	3 cut(s)	28, 85, 134
TseI	GCWGC	4 cut(s)	170, 245, 572, 686
Tsp45I	GTSAC	3 cut(s)	28, 85, 134
TspDTI	ATGAA	5 cut(s)	17, 344, 390, 448, 485
TspRI	CASTG	2 cut(s)	183, 598
VpaK11BI	GGWCC	1 cut(s)	631
XagI	CCTNNNNNAGG	1 cut(s)	151
XapI	RAATTY	1 cut(s)	546
XbaI	TCTAGA	1 cut(s)	817
XspI	CTAG	4 cut(s)	107, 366, 576, 818
ZrmI	AGTACT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.