Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005541

Physical Location & Seq

Genomic Coordinates Forward (+)

40863811 .. 40870512

Gene Structure 6702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00316200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGAAAAAGTGCAAGAGGTCAAGATGTGACCATGGTCAGGAGAGCACCAAAGCGTCCACTAAGGGTTGTTGACATACCCGTTGTGACCCCGATGAGTCTTGGACTAGTGAAGTATGCAGGCCAAGCCTGGTGTGACCTATCATCCTTGAGGAGGGTCAGTTCAGGAGCTGCACCATTGAGCAAAGAAGTGGCTGATGAGTTCAGACTGAAGTTTCCTTGGGAGTTGAAGCCGGGGTATGGCCTAACTGAAAGTTTCAGGGCAGCAACTTTCTTTATTTCCAATGAACAAGACACACCGGCTCATGTGGGCATCTGGTTCCAAGATTTGCTGCTAAGATTGTGGATATTGAAACTGGACAGGCTTTGGAACCTTATAAGGAAGGAGAGTTGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

132

Amino Acids

15.07

Weight (kDa)

10.01

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	26 - 105	1e-09	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06560
malus_domestica	MD02G1242900.v1.1 MD07G1073800.v1.1
prunus_persica	Prupe.2G091700_v2.0.a1
pyrus_communis	pycom02g20960
rosa_chinensis	RchiOBHm_Chr1g0334411 RchiOBHm_Chr1g0335091
rosa_laevigata	RLG00000029393 RLG00000029397 RLG00000029398
rosa_multiflora	Rmu_co8496191.1_g000001 Rmu_sc0002714.1_g000004 Rmu_ssc0000047.1_g000022
rosa_roxburghii	Rroxscaffold_4G00316160 Rroxscaffold_4G00316200 Rroxscaffold_4G00316870
rosa_rugosa	Rorug01G0119000 Rorug01G0119100 Rorug01G0119200
rosa_samantha	Rh1AG138600 Rh1AG141800 Rh1BG110300 Rh1BG111200 Rh1CG130600 Rh1CG133700 Rh1DG142900 Rh1DG146600 Rh1DG148100
rosa_wichuraiana	Rw0G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	230
AfiI	CCNNNNNNNGG	3 cut(s)	39, 153, 239
AgsI	TTSAA	2 cut(s)	229, 352
AhlI	ACTAGT	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	128
AloI	GAACNNNNNNTCC	2 cut(s)	145, 177
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw21I	GWGCWC	1 cut(s)	49
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	121, 241
ApeKI	GCWGC	3 cut(s)	170, 263, 331
AsuC2I	CCSGG	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	157, 275, 318
BciT130I	CCWGG	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	234
BcuI	ACTAGT	1 cut(s)	106
BfaI	CTAG	1 cut(s)	107
BisI	GCNGC	3 cut(s)	171, 264, 332
BlsI	GCNGC	3 cut(s)	172, 265, 333
Bme1390I	CCNGG	2 cut(s)	130, 234
BmiI	GGNNCC	2 cut(s)	320, 371
BmrFI	CCNGG	2 cut(s)	130, 234
BmsI	GCATC	1 cut(s)	321
BoxI	GACNNNNGTC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	33, 218, 233
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 153, 239
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	3 cut(s)	33, 218, 233
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	3 cut(s)	39, 153, 239
BseNI	ACTGG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	157, 275, 318
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	123, 243
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	233, 299
BslI	CCNNNNNNNGG	3 cut(s)	39, 153, 239
BsnI	GGCC	2 cut(s)	123, 243
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp19I	CCATGG	1 cut(s)	33
BspANI	GGCC	2 cut(s)	123, 243
BspLI	GGNNCC	2 cut(s)	320, 371
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	360
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	3 cut(s)	33, 218, 233
BssT1I	CCWWGG	2 cut(s)	33, 218
Bst2UI	CCWGG	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	62, 335
BstDSI	CCRYGG	1 cut(s)	33
BstENI	CCTNNNNNAGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	130
BstPAI	GACNNNNGTC	1 cut(s)	35
BstSCI	CCNGG	2 cut(s)	128, 232
BstV1I	GCAGC	3 cut(s)	157, 275, 318
BsuRI	GGCC	2 cut(s)	123, 243
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	298
CseI	GACGC	1 cut(s)	44
CviAII	CATG	2 cut(s)	34, 305
CviJI	RGCY	9 cut(s)	123, 128, 170, 194, 232, 243, 302, 364, 396
CviKI_1	RGCY	9 cut(s)	123, 128, 170, 194, 232, 243, 302, 364, 396
DdeI	CTNAG	2 cut(s)	62, 335
Eco130I	CCWWGG	2 cut(s)	33, 218
Eco57I	CTGAAG	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	2 cut(s)	33, 218
ErhI	CCWWGG	2 cut(s)	33, 218
FaeI	CATG	2 cut(s)	37, 308
FaiI	YATR	6 cut(s)	35, 77, 117, 240, 306, 377
FatI	CATG	2 cut(s)	33, 304
Fnu4HI	GCNGC	3 cut(s)	171, 264, 332
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	3 cut(s)	171, 264, 332
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	3 cut(s)	171, 264, 332
HaeIII	GGCC	2 cut(s)	123, 243
HapII	CCGG	2 cut(s)	233, 299
HgaI	GACGC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	37, 308
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	2 cut(s)	233, 299
Hpy166II	GTNNAC	2 cut(s)	59, 73
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	3 cut(s)	23, 40, 165
Hpy8I	GTNNAC	2 cut(s)	59, 73
HpyAV	CCTTC	1 cut(s)	376
HpyCH4V	TGCA	3 cut(s)	14, 119, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	2 cut(s)	62, 335
Hsp92II	CATG	2 cut(s)	37, 308
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	3 cut(s)	157, 275, 318
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	3 cut(s)	28, 85, 134
MhlI	GDGCHC	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	11, 144, 147
MspI	CCGG	2 cut(s)	233, 299
MspR9I	CCNGG	2 cut(s)	130, 234
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	234
NcoI	CCATGG	1 cut(s)	33
NlaIII	CATG	2 cut(s)	37, 308
NlaIV	GGNNCC	2 cut(s)	320, 371
NmuCI	GTSAC	3 cut(s)	28, 85, 134
PkrI	GCNGC	3 cut(s)	172, 265, 333
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PshAI	GACNNNNGTC	1 cut(s)	35
PsiI	TTATAA	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	2 cut(s)	320, 371
PstNI	CAGNNNCTG	1 cut(s)	170
SatI	GCNGC	3 cut(s)	171, 264, 332
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	130, 234
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	4 cut(s)	22, 141, 172, 375
SfaNI	GCATC	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
SpeI	ACTAGT	1 cut(s)	106
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	128, 232
StyI	CCWWGG	2 cut(s)	33, 218
TseFI	GTSAC	3 cut(s)	28, 85, 134
TseI	GCWGC	3 cut(s)	170, 263, 331
Tsp45I	GTSAC	3 cut(s)	28, 85, 134
TspDTI	ATGAA	1 cut(s)	300
XagI	CCTNNNNNAGG	1 cut(s)	151
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.