Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005541

Physical Location & Seq

Genomic Coordinates Reverse (-)

26255650 .. 26256217

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG138600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGTCAGGAGAGCACCAAAGCGTCCACTAAGGGTTGTTGACATACCCGTTGTGACCCCGATGAGTCTTGGACTAGTGAAGTATGCAGGCCAAGCCTGGTGTGACTTATCATCCTTGAGGTGGGTCAGTTCAGGAGCTGCACCATTGAGCAAAGAAGTGGCTGATGAGTTCAGACTGAAGTTTCCTTGGGTTGAGTTGAGGCCGGGGTATGGCCTAACTGTAAGTTTCGGGGCAGCAACTTTCTTTATTTCCAATGAACAAGACACACCGGCTCATGCGGGCATCTGGTTCCAAGATTTGCTGCTAAGATTGTGGATATTGAAACTGGACAGGCTTTGGGACCTTATAAGGAAGGAGAGTTGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

122

Amino Acids

13.84

Weight (kDa)

9.39

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	15 - 95	1.6e-08	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06560
malus_domestica	MD02G1242900.v1.1 MD07G1073800.v1.1
prunus_persica	Prupe.2G091700_v2.0.a1
pyrus_communis	pycom02g20960
rosa_chinensis	RchiOBHm_Chr1g0334411 RchiOBHm_Chr1g0335091
rosa_laevigata	RLG00000029393 RLG00000029397 RLG00000029398
rosa_multiflora	Rmu_co8496191.1_g000001 Rmu_sc0002714.1_g000004 Rmu_ssc0000047.1_g000022
rosa_roxburghii	Rroxscaffold_4G00316160 Rroxscaffold_4G00316200 Rroxscaffold_4G00316870
rosa_rugosa	Rorug01G0119000 Rorug01G0119100 Rorug01G0119200
rosa_samantha	Rh1AG138600 Rh1AG141800 Rh1BG110300 Rh1BG111200 Rh1CG130600 Rh1CG133700 Rh1DG142900 Rh1DG146600 Rh1DG148100
rosa_wichuraiana	Rw0G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
AciI	CCGC	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	120, 209
AgsI	TTSAA	1 cut(s)	322
AhlI	ACTAGT	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw21I	GWGCWC	1 cut(s)	16
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	3 cut(s)	88, 200, 211
ApeKI	GCWGC	3 cut(s)	137, 233, 301
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	3 cut(s)	124, 245, 288
BciT130I	CCWGG	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	204
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	3 cut(s)	138, 234, 302
BlsI	GCNGC	3 cut(s)	139, 235, 303
Bme1390I	CCNGG	2 cut(s)	97, 204
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	290, 341
BmrFI	CCNGG	2 cut(s)	97, 204
BmsI	GCATC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	185, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 209
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	185, 203
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	120, 209
BseNI	ACTGG	1 cut(s)	330
BseXI	GCAGC	3 cut(s)	124, 245, 288
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	3 cut(s)	90, 202, 213
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	203, 269
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	120, 209
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	3 cut(s)	90, 202, 213
Bsp1286I	GDGCHC	1 cut(s)	16
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	3 cut(s)	90, 202, 213
BspLI	GGNNCC	2 cut(s)	290, 341
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	185, 203
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	88, 280
BstDEI	CTNAG	2 cut(s)	29, 305
BstF5I	GGATG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	2 cut(s)	95, 202
BstV1I	GCAGC	3 cut(s)	124, 245, 288
BsuRI	GGCC	3 cut(s)	90, 202, 213
BtsCI	GGATG	1 cut(s)	110
Cac8I	GCNNGC	2 cut(s)	88, 280
CaiI	CAGNNNCTG	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	340
CseI	GACGC	1 cut(s)	11
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	9 cut(s)	90, 95, 137, 161, 202, 213, 272, 334, 366
CviKI_1	RGCY	9 cut(s)	90, 95, 137, 161, 202, 213, 272, 334, 366
DdeI	CTNAG	2 cut(s)	29, 305
Eco130I	CCWWGG	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	1 cut(s)	278
FaiI	YATR	5 cut(s)	44, 84, 210, 276, 347
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	1 cut(s)	274
FauI	CCCGC	1 cut(s)	271
Fnu4HI	GCNGC	3 cut(s)	138, 234, 302
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	3 cut(s)	138, 234, 302
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	3 cut(s)	138, 234, 302
HaeIII	GGCC	3 cut(s)	90, 202, 213
HapII	CCGG	2 cut(s)	203, 269
HgaI	GACGC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	278
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	64
HpaII	CCGG	2 cut(s)	203, 269
Hpy166II	GTNNAC	2 cut(s)	26, 40
Hpy188I	TCNGA	1 cut(s)	173
Hpy188III	TCNNGA	2 cut(s)	7, 132
Hpy8I	GTNNAC	2 cut(s)	26, 40
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	86, 140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	29, 305
Hsp92II	CATG	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	9 cut(s)	72, 82, 109, 117, 216, 271, 282, 311, 316
Lsp1109I	GCAGC	3 cut(s)	124, 245, 288
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	52, 101
MhlI	GDGCHC	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	2 cut(s)	111, 192
MspI	CCGG	2 cut(s)	203, 269
MspR9I	CCNGG	2 cut(s)	97, 204
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	92
NciI	CCSGG	1 cut(s)	204
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	2 cut(s)	290, 341
NmuCI	GTSAC	2 cut(s)	52, 101
PkrI	GCNGC	3 cut(s)	139, 235, 303
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PpuMI	RGGWCCY	1 cut(s)	340
PsiI	TTATAA	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	290, 341
PspPI	GGNCC	1 cut(s)	340
PspPPI	RGGWCCY	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	137
SatI	GCNGC	3 cut(s)	138, 234, 302
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	2 cut(s)	97, 204
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	3 cut(s)	122, 139, 345
SfaNI	GCATC	1 cut(s)	291
SinI	GGWCC	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
SpeI	ACTAGT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	2 cut(s)	95, 202
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	1 cut(s)	220
TseFI	GTSAC	2 cut(s)	52, 101
TseI	GCWGC	3 cut(s)	137, 233, 301
Tsp45I	GTSAC	2 cut(s)	52, 101
TspDTI	ATGAA	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	340
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.