Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005541

Physical Location & Seq

Genomic Coordinates Reverse (-)

20839648 .. 20841294

Gene Structure 1647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0119200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCTTTCCATTGATTATCAATATCGATCATCACTAAGGATGTGTTTTTTAAACTTGATTGGAATATTGTCTCAAGAATACAAACATGGCAAAGAGAACAGATGCAGGACTTTGGAATATGAAGTTGCTGATTCTTTGATTTTATATCATCCACATGTCTATAAGAGTACAATAAACTATACTAATTGTTTCCCTATGCGAAATTGGGAATTTGGAGCATGCAGGAATGATTTTCAATGGAACTTCTATTCTTTTTCTACGATAATGGACACAAGACTATTCAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

96

Amino Acids

11.7

Weight (kDa)

8.39

Isoelectric Point (pI)

25.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06560
malus_domestica	MD02G1242900.v1.1 MD07G1073800.v1.1
prunus_persica	Prupe.2G091700_v2.0.a1
pyrus_communis	pycom02g20960
rosa_chinensis	RchiOBHm_Chr1g0334411 RchiOBHm_Chr1g0335091
rosa_laevigata	RLG00000029393 RLG00000029397 RLG00000029398
rosa_multiflora	Rmu_co8496191.1_g000001 Rmu_sc0002714.1_g000004 Rmu_ssc0000047.1_g000022
rosa_roxburghii	Rroxscaffold_4G00316160 Rroxscaffold_4G00316200 Rroxscaffold_4G00316870
rosa_rugosa	Rorug01G0119000 Rorug01G0119100 Rorug01G0119200
rosa_samantha	Rh1AG138600 Rh1AG141800 Rh1BG110300 Rh1BG111200 Rh1CG130600 Rh1CG133700 Rh1DG142900 Rh1DG146600 Rh1DG148100
rosa_wichuraiana	Rw0G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	75
BmsI	GCATC	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	25
BseCI	ATCGAT	1 cut(s)	25
BseGI	GGATG	2 cut(s)	45, 148
BshVI	ATCGAT	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	26
BspDI	ATCGAT	1 cut(s)	25
BssMI	GATC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	45, 148
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	26
BstNSI	RCATGY	2 cut(s)	158, 222
Bsu15I	ATCGAT	1 cut(s)	25
BsuTUI	ATCGAT	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	45, 148
Cac8I	GCNNGC	1 cut(s)	220
ClaI	ATCGAT	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	3 cut(s)	86, 155, 219
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
DraI	TTTAAA	1 cut(s)	51
FaeI	CATG	3 cut(s)	89, 158, 222
FaiI	YATR	9 cut(s)	87, 120, 145, 156, 162, 180, 197, 220, 289
FatI	CATG	3 cut(s)	85, 154, 218
FokI	GGATG	2 cut(s)	52, 135
Hin1II	CATG	3 cut(s)	89, 158, 222
HinfI	GANTC	1 cut(s)	131
Hpy188III	TCNNGA	1 cut(s)	74
HpyCH4V	TGCA	2 cut(s)	105, 222
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	89, 158, 222
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	3 cut(s)	91, 208, 268
LweI	GCATC	1 cut(s)	92
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MluCI	AATT	3 cut(s)	184, 202, 209
MseI	TTAA	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	153
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	3 cut(s)	89, 158, 222
NspI	RCATGY	2 cut(s)	158, 222
PaeI	GCATGC	1 cut(s)	222
PciI	ACATGT	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	131
PscI	ACATGT	1 cut(s)	154
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	50
Sau3AI	GATC	1 cut(s)	26
SfaNI	GCATC	1 cut(s)	92
SgeI	CNNG	8 cut(s)	67, 86, 98, 118, 167, 231, 235, 285
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	3 cut(s)	184, 202, 209
SspI	AATATT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	25
TasI	AATT	3 cut(s)	184, 202, 209
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	135
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	2 cut(s)	158, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.