Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005541

Physical Location & Seq

Genomic Coordinates Forward (+)

19039425 .. 19040025

Gene Structure 601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG111200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGAAAAAGTGCAAGAGGTCAAGATGTGACCATGGTCAGGAGAGCACCAAAGCGTCCACAAAGGGTTGTTGACATACCCGTTGTGACCCCGATGAGTCTTGGACTAGTGAAATATGCAGGTCAAGCCTGGTGTGACCTATCATCCTTGAGGAGGGTCAGTTCAGGAGCTGCACCATTGAGCAAAGAAGTGGCTGATGAGTTCAGACTGAAGTTTCCTTGGGTTGAGTTGAAGCCGGGGTATGGCCTAACTGAAAGTTTCGGGGCAGCAACTTTCTTTATTTCCAATGAACAAGACACACCGGCTCATGCGGGCATCTGGTTCCAAGATTTGCTGCTAAGATTGTGGATATTGAAACTGGACAGGCTTTGGAACCTTATAAGGAAGGAGAGTTGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

133

Amino Acids

15.06

Weight (kDa)

9.85

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	26 - 106	3.3e-10	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06560
malus_domestica	MD02G1242900.v1.1 MD07G1073800.v1.1
prunus_persica	Prupe.2G091700_v2.0.a1
pyrus_communis	pycom02g20960
rosa_chinensis	RchiOBHm_Chr1g0334411 RchiOBHm_Chr1g0335091
rosa_laevigata	RLG00000029393 RLG00000029397 RLG00000029398
rosa_multiflora	Rmu_co8496191.1_g000001 Rmu_sc0002714.1_g000004 Rmu_ssc0000047.1_g000022
rosa_roxburghii	Rroxscaffold_4G00316160 Rroxscaffold_4G00316200 Rroxscaffold_4G00316870
rosa_rugosa	Rorug01G0119000 Rorug01G0119100 Rorug01G0119200
rosa_samantha	Rh1AG138600 Rh1AG141800 Rh1BG110300 Rh1BG111200 Rh1CG130600 Rh1CG133700 Rh1DG142900 Rh1DG146600 Rh1DG148100
rosa_wichuraiana	Rw0G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
Acc36I	ACCTGC	1 cut(s)	110
AciI	CCGC	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	230
AfiI	CCNNNNNNNGG	3 cut(s)	39, 153, 242
AgsI	TTSAA	2 cut(s)	232, 355
AhlI	ACTAGT	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	128
AloI	GAACNNNNNNTCC	2 cut(s)	145, 177
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw21I	GWGCWC	1 cut(s)	49
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	3 cut(s)	170, 266, 334
AsuC2I	CCSGG	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	157, 278, 321
BciT130I	CCWGG	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	237
BcuI	ACTAGT	1 cut(s)	106
BfaI	CTAG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	110
BisI	GCNGC	3 cut(s)	171, 267, 335
BlsI	GCNGC	3 cut(s)	172, 268, 336
Bme1390I	CCNGG	2 cut(s)	130, 237
BmiI	GGNNCC	2 cut(s)	323, 374
BmrFI	CCNGG	2 cut(s)	130, 237
BmsI	GCATC	1 cut(s)	324
BoxI	GACNNNNGTC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	237
BsaJI	CCNNGG	3 cut(s)	33, 218, 236
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 153, 242
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	3 cut(s)	33, 218, 236
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	3 cut(s)	39, 153, 242
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	157, 278, 321
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	236, 302
BslI	CCNNNNNNNGG	3 cut(s)	39, 153, 242
BsnI	GGCC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	1 cut(s)	311
BspANI	GGCC	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	323, 374
BspMI	ACCTGC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	363
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	3 cut(s)	33, 218, 236
BssT1I	CCWWGG	2 cut(s)	33, 218
Bst2UI	CCWGG	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	33
BstENI	CCTNNNNNAGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	130
BstPAI	GACNNNNGTC	1 cut(s)	35
BstSCI	CCNGG	2 cut(s)	128, 235
BstV1I	GCAGC	3 cut(s)	157, 278, 321
BsuRI	GGCC	1 cut(s)	246
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	143
BveI	ACCTGC	1 cut(s)	110
Cac8I	GCNNGC	1 cut(s)	313
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	301
CseI	GACGC	1 cut(s)	44
CviAII	CATG	2 cut(s)	34, 308
CviJI	RGCY	8 cut(s)	128, 170, 194, 235, 246, 305, 367, 399
CviKI_1	RGCY	8 cut(s)	128, 170, 194, 235, 246, 305, 367, 399
DdeI	CTNAG	1 cut(s)	338
Eco130I	CCWWGG	2 cut(s)	33, 218
Eco57I	CTGAAG	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	2 cut(s)	33, 218
ErhI	CCWWGG	2 cut(s)	33, 218
FaeI	CATG	2 cut(s)	37, 311
FaiI	YATR	6 cut(s)	35, 77, 117, 243, 309, 380
FatI	CATG	2 cut(s)	33, 307
FauI	CCCGC	1 cut(s)	304
Fnu4HI	GCNGC	3 cut(s)	171, 267, 335
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	3 cut(s)	171, 267, 335
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	3 cut(s)	171, 267, 335
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	2 cut(s)	236, 302
HgaI	GACGC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	37, 311
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	2 cut(s)	236, 302
Hpy166II	GTNNAC	2 cut(s)	59, 73
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	3 cut(s)	23, 40, 165
Hpy8I	GTNNAC	2 cut(s)	59, 73
HpyAV	CCTTC	1 cut(s)	379
HpyCH4V	TGCA	3 cut(s)	14, 119, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	338
Hsp92II	CATG	2 cut(s)	37, 311
LmnI	GCTCC	1 cut(s)	167
Lsp1109I	GCAGC	3 cut(s)	157, 278, 321
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	3 cut(s)	28, 85, 134
MhlI	GDGCHC	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	11, 144, 147
MspI	CCGG	2 cut(s)	236, 302
MspR9I	CCNGG	2 cut(s)	130, 237
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	237
NcoI	CCATGG	1 cut(s)	33
NlaIII	CATG	2 cut(s)	37, 311
NlaIV	GGNNCC	2 cut(s)	323, 374
NmuCI	GTSAC	3 cut(s)	28, 85, 134
PkrI	GCNGC	3 cut(s)	172, 268, 336
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PshAI	GACNNNNGTC	1 cut(s)	35
PsiI	TTATAA	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	2 cut(s)	323, 374
PstNI	CAGNNNCTG	1 cut(s)	170
SatI	GCNGC	3 cut(s)	171, 267, 335
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	130, 237
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	5 cut(s)	22, 124, 141, 172, 378
SfaNI	GCATC	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
SpeI	ACTAGT	1 cut(s)	106
SsiI	CCGC	1 cut(s)	311
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	128, 235
StyI	CCWWGG	2 cut(s)	33, 218
TseFI	GTSAC	3 cut(s)	28, 85, 134
TseI	GCWGC	3 cut(s)	170, 266, 334
Tsp45I	GTSAC	3 cut(s)	28, 85, 134
TspDTI	ATGAA	1 cut(s)	303
XagI	CCTNNNNNAGG	1 cut(s)	151
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.