Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005541

Physical Location & Seq

Genomic Coordinates Forward (+)

41806074 .. 41807434

Gene Structure 1361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00316870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGATGCAGAGGAAGAGAAATGAAAAAAGTGCAAGAGGTCAAGATGTGACCATGGTCAGGAGAGCACCAAAGCGTCCACTAAGGGTTGTTGACATACCCGTTGTGACCCCGATGAGTCTTGGACTAGTGAAGTATGCAGGCCAAGCCTGGTGTGACTTATCATCCTTGAGGTGGGTTAGTTCAGGAGCTGCACCATTGAGCAAAGAAGTGGCTGATGAGTTCAGACTGAAGTTTCCTTGGGTTGAGTTGAGGCCGGGGTATGGCCTAACTGCTTTGGGACCTCATAAGGAAGGAGAGTTGTGGCTGAAGAGTCCAATTATAATGAAAGAGTATCTGGGGAATGTGGTAGCAACCATTGCTAGTATTGATGAAGATGGGTGGTTAAAAACTGGTTGCTCCTGCAGAATTGGAAGCAATTCTCTTGAGCCATCTCAAATTCTTGATGCTGCTGTCGTACCGGTTGAAGATGAAGAAGTAGGACAAATACCAATGGCATATGTGGTGAGAGCAGCTAGTATTGAACTGATCACTGAAGACCAAGTGGCCCCCTACAAAAAATTCAGTAAAGTTGGGTTTATATCTGCCATTCCAAGATCAGCTGCAAGCAAAATCTCGAGGAAGGAACTTGTTGGTTTACAAAGCAAACAGCAAATCGTCTCCAGACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

222

Amino Acids

24.48

Weight (kDa)

9.36

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	32 - 91	4.4e-06	AMP-binding enzyme
AMP-binding_C	PF13193	145 - 203	1.9e-07	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06560
malus_domestica	MD02G1242900.v1.1 MD07G1073800.v1.1
prunus_persica	Prupe.2G091700_v2.0.a1
pyrus_communis	pycom02g20960
rosa_chinensis	RchiOBHm_Chr1g0334411 RchiOBHm_Chr1g0335091
rosa_laevigata	RLG00000029393 RLG00000029397 RLG00000029398
rosa_multiflora	Rmu_co8496191.1_g000001 Rmu_sc0002714.1_g000004 Rmu_ssc0000047.1_g000022
rosa_roxburghii	Rroxscaffold_4G00316160 Rroxscaffold_4G00316200 Rroxscaffold_4G00316870
rosa_rugosa	Rorug01G0119000 Rorug01G0119100 Rorug01G0119200
rosa_samantha	Rh1AG138600 Rh1AG141800 Rh1BG110300 Rh1BG111200 Rh1CG130600 Rh1CG133700 Rh1DG142900 Rh1DG146600 Rh1DG148100
rosa_wichuraiana	Rw0G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
AcsI	RAATTY	2 cut(s)	435, 557
AcuI	CTGAAG	3 cut(s)	248, 326, 552
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	3 cut(s)	57, 171, 260
AgeI	ACCGGT	1 cut(s)	457
AgsI	TTSAA	2 cut(s)	464, 521
AhlI	ACTAGT	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	3 cut(s)	188, 512, 599
AluI	AGCT	3 cut(s)	188, 512, 599
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	661
AlwNI	CAGNNNCTG	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	613
AoxI	GGCC	4 cut(s)	139, 251, 262, 543
ApeKI	GCWGC	4 cut(s)	188, 446, 509, 599
ApoI	RAATTY	2 cut(s)	435, 557
AsiGI	ACCGGT	1 cut(s)	457
Asp700I	GAANNNNTTC	1 cut(s)	415
AspS9I	GGNCC	2 cut(s)	278, 544
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	514
AvaI	CYCGRG	1 cut(s)	613
AvaII	GGWCC	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	175, 433, 521, 586
BccI	CCATC	2 cut(s)	368, 436
BciT130I	CCWGG	1 cut(s)	148
BclI	TGATCA	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	661
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	3 cut(s)	125, 360, 513
BfmI	CTRYAG	1 cut(s)	400
BisI	GCNGC	4 cut(s)	189, 447, 510, 600
BlsI	GCNGC	4 cut(s)	190, 448, 511, 601
Bme1390I	CCNGG	2 cut(s)	148, 255
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	613
BmgT120I	GGNCC	2 cut(s)	278, 544
BmiI	GGNNCC	2 cut(s)	279, 546
BmrFI	CCNGG	2 cut(s)	148, 255
BmsI	GCATC	1 cut(s)	433
BoxI	GACNNNNGTC	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	540
BpmI	CTGGAG	1 cut(s)	643
BpuEI	CTTGAG	2 cut(s)	187, 443
BpuMI	CCSGG	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	51, 236, 254
BsaWI	WCCGGW	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 171, 260
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	3 cut(s)	51, 236, 254
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	3 cut(s)	57, 171, 260
BseMI	GCAATG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	394
BseXI	GCAGC	4 cut(s)	175, 433, 521, 586
BsgI	GTGCAG	1 cut(s)	174
BshFI	GGCC	4 cut(s)	141, 253, 264, 545
BshTI	ACCGGT	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	613
BsiSI	CCGG	2 cut(s)	254, 458
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	57, 171, 260
BsmAI	GTCTC	1 cut(s)	661
BsmBI	CGTCTC	1 cut(s)	661
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	4 cut(s)	141, 253, 264, 545
BsoBI	CYCGRG	1 cut(s)	613
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	525, 593
Bsp19I	CCATGG	1 cut(s)	51
BspANI	GGCC	4 cut(s)	141, 253, 264, 545
BspLI	GGNNCC	2 cut(s)	279, 546
BspMAI	CTGCAG	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	3 cut(s)	51, 236, 254
BssMI	GATC	2 cut(s)	525, 593
BssT1I	CCWWGG	2 cut(s)	51, 236
Bst2UI	CCWGG	1 cut(s)	148
Bst6I	CTCTTC	2 cut(s)	8, 302
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	139, 604
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	161
BstKTI	GATC	2 cut(s)	528, 596
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	2 cut(s)	525, 593
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 356
BstNI	CCWGG	1 cut(s)	148
BstPAI	GACNNNNGTC	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	146, 253
BstSFI	CTRYAG	1 cut(s)	400
BstV1I	GCAGC	4 cut(s)	175, 433, 521, 586
BstV2I	GAAGAC	1 cut(s)	540
BsuRI	GGCC	4 cut(s)	141, 253, 264, 545
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	2 cut(s)	139, 604
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	278, 544
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	455
CspAI	ACCGGT	1 cut(s)	457
CviAII	CATG	1 cut(s)	52
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	527, 595
DpnII	GATC	2 cut(s)	525, 593
Eam1104I	CTCTTC	2 cut(s)	8, 302
EarI	CTCTTC	2 cut(s)	8, 302
Eco130I	CCWWGG	2 cut(s)	51, 236
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	3 cut(s)	248, 326, 552
Eco88I	CYCGRG	1 cut(s)	613
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	51, 236
ErhI	CCWWGG	2 cut(s)	51, 236
Esp3I	CGTCTC	1 cut(s)	661
FaeI	CATG	1 cut(s)	55
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	1 cut(s)	51
FauNDI	CATATG	1 cut(s)	496
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	4 cut(s)	189, 447, 510, 600
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	4 cut(s)	189, 447, 510, 600
FspBI	CTAG	3 cut(s)	125, 360, 513
GluI	GCNGC	4 cut(s)	189, 447, 510, 600
GsuI	CTGGAG	1 cut(s)	643
HaeIII	GGCC	4 cut(s)	141, 253, 264, 545
HapII	CCGG	2 cut(s)	254, 458
HgaI	GACGC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	115, 310
HpaII	CCGG	2 cut(s)	254, 458
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	3 cut(s)	77, 91, 635
Hpy188I	TCNGA	1 cut(s)	224
Hpy188III	TCNNGA	7 cut(s)	41, 58, 183, 422, 440, 613, 660
Hpy8I	GTNNAC	3 cut(s)	77, 91, 635
HpyAV	CCTTC	2 cut(s)	284, 613
HpyCH4V	TGCA	6 cut(s)	7, 32, 137, 191, 402, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 356
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	55
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	2 cut(s)	525, 593
LmnI	GCTCC	2 cut(s)	185, 401
Lsp1109I	GCAGC	4 cut(s)	175, 433, 521, 586
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	3 cut(s)	125, 360, 513
MaeIII	GTNAC	3 cut(s)	46, 103, 152
MalI	GATC	2 cut(s)	527, 595
MboI	GATC	2 cut(s)	525, 593
MboII	GAAGA	6 cut(s)	25, 319, 383, 476, 482, 545
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	5 cut(s)	315, 405, 415, 435, 557
MlyI	GAGTC	2 cut(s)	124, 319
MnlI	CCTC	6 cut(s)	3, 29, 162, 243, 291, 609
MroXI	GAANNNNTTC	1 cut(s)	415
MseI	TTAA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	2 cut(s)	254, 458
MspR9I	CCNGG	2 cut(s)	148, 255
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	143, 356
NciI	CCSGG	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	51
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	2 cut(s)	525, 593
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	2 cut(s)	279, 546
NmuCI	GTSAC	3 cut(s)	46, 103, 152
PaeR7I	CTCGAG	1 cut(s)	613
PdmI	GAANNNNTTC	1 cut(s)	415
PinAI	ACCGGT	1 cut(s)	457
PkrI	GCNGC	4 cut(s)	190, 448, 511, 601
PleI	GAGTC	2 cut(s)	123, 318
PpsI	GAGTC	2 cut(s)	123, 318
PpuMI	RGGWCCY	1 cut(s)	278
PshAI	GACNNNNGTC	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	279, 546
PspPI	GGNCC	2 cut(s)	278, 544
PspPPI	RGGWCCY	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	404
PstNI	CAGNNNCTG	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	4 cut(s)	189, 447, 510, 600
Sau3AI	GATC	2 cut(s)	525, 593
Sau96I	GGNCC	2 cut(s)	278, 544
SchI	GAGTC	2 cut(s)	124, 319
ScrFI	CCNGG	2 cut(s)	148, 255
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	6 cut(s)	40, 173, 190, 283, 514, 601
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	400
Sfr274I	CTCGAG	1 cut(s)	613
SinI	GGWCC	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	613
SmlI	CTYRAG	3 cut(s)	166, 422, 613
SmoI	CTYRAG	3 cut(s)	166, 422, 613
SpeI	ACTAGT	1 cut(s)	124
Sse9I	AATT	5 cut(s)	315, 405, 415, 435, 557
SspMI	CTAG	3 cut(s)	125, 360, 513
StyD4I	CCNGG	2 cut(s)	146, 253
StyI	CCWWGG	2 cut(s)	51, 236
TaqI	TCGA	1 cut(s)	614
TasI	AATT	5 cut(s)	315, 405, 415, 435, 557
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TscAI	CASTG	1 cut(s)	535
TseFI	GTSAC	3 cut(s)	46, 103, 152
TseI	GCWGC	4 cut(s)	188, 446, 509, 599
Tsp45I	GTSAC	3 cut(s)	46, 103, 152
TspDTI	ATGAA	4 cut(s)	36, 338, 384, 483
TspRI	CASTG	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	2 cut(s)	435, 557
XhoI	CTCGAG	1 cut(s)	613
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	3 cut(s)	125, 360, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.