Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005541

Physical Location & Seq

Genomic Coordinates Forward (+)

20821793 .. 20825104

Gene Structure 3312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0119100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

ATGGGAATAAGTGGGATAAGGAGCCTCTCCCTGTGTGGGTGGGTGTCGATTGTAGTCTTTTTTGTTCTTGGCTTATCTACCGCTTCTTCCTCCGGCAAGATCCACACAACAAGTGTTCTGGGCGATAACGGTACGTGTGTCCCTTCTTCCTGCGGCGACGTCCACAACATAAGCTACCCTTTTCGACTACAACAAGATCCAAAGCACTGTGGCGACCAAAGGTTCCCTTTGGAATGTCACAACAACATCCCAGTGCTGCGCCTATTTTCTCACGAGTACTACGTGAAGGCCATTGACTACGATAACATGACAATCCGAGTGGTAGATCCTGGCCTTGAGAAGAACAACTGCGCTTCCCTTCCCTGGTTTCCTTTGGCCTATTTTAATTTCACTTATGATTCAAGTGACGGAATATTGTGGCCATCTTATTCAGATTCTGTAACTTTCTTGAAGTGTGCAAATCCAGTGAATTCTTCTCTGTATGTGAACACTGCACCCTGTATTAAATCCAAAGGGTATGGTTATTGCATTCGAGGCCATATGTCCCGGGAAGATGTGGAGAATGGGTGCAGTATAGATTGGATGGGTATGATCACTTCGATGCACGGAAAGGACCGAAACATTTCCTATCAAGATATACACAATGAACTGGTGTATGGCTTTGAGCTGAGCTGGAGTAATTTGTACATTGTCGATTGCCAACGTCAATGGAATTACACTTATCGGGACGGATCTGAAGCATGTTATCCGCGCAGCATCCCAGGTTTCTTTGGACTTGGTTGGACGGTGTTAATCGGTAAGGGCCATTTCTTTCGACTTGGTTGGACGGTGTTAATCGACCGCGGTCATCTTTACTTGGATCTTATCGTTGCTGCCAGTGTTGTAGTTATCGTTGCTGCCAGTGTTGTAGGGGTAAAACTTATATTTGGAGGTCCATTTGTGATTGCACTTCTGATATACAAGTGGCGAAGAAGACATTGGTCAACCTACAACACTATAGAAGATTTTCTGCATAGTGACAATTTTATGCCTATAAGGTACTCTTACTCCAACATTAAGAAAATGTCTGATGGATTCAAAGATAAGTTGGGCGAAGGGGGCTATGGGTCTGTATTTAAAGGCAAATTGCGAAGTGGCCACTTTGGAGCCATTAAGTTGTTAGGCAAGTCTAATGCTAATGGGGAAGCTTTCACGAGTGAAGTAGCTACTATTGGAAGGATTCATCATGTTAATGTGGTGCAGCTTGTTGGTTACTGTGTTGAGGGTTCAAAGCGCGCTTTAGTATATGATTTCATGCCAAATGGGTCTCTTGATAAATACATTTACTCTAAAGAAGGATCCATCACTTTAAGTTATAAGAAAATATATGAGATTGCAGTTGGAGTAGCTCAGGGTATTGAATATTTGCATCAAGGTTGTGAAATGCAAATTCTACATTTTGATATCAAGCCTCATAATATTCTACTTGATGAGAATTTTATCCCAAAGATTTCTGACTTTGGGCTAGCGAAACTATATCCAGTGAATAACAGCATCGTCTCTTCAATGGCAGCAAGAGGCACTATGGGATACATTGCTCCCGAGTTGTTTTATAAAAACATTGGTGGTGTTTCATACAAAGCTGACGTCTATAGTTTTGGAATGTTGTTGATGGAAATGGCAAGCAGAAGGAAAAATCTAAATGCACTTATAGATCACTCAAGCCAACTTTACTTCCCCTCATGGGTGCATGATCAATATAATGATGGGAAAGACTTGGAGATTGGCGATGGTACAGCAGAGGAAAGGAAATTAATTAAAAAAATGATTGTAACTGCCTTGTGGTGTATTCAAATGAAACCAAGTGATCGACCTTCAATGAAGAGAGTCACACAGATGCTTGTAGGAGATGATGAACACCTAGAAATGCCGCCAAAGCCTTCTCTATGCCCACAACCAATGCCCGTAAGCAATTTGATTCCAGCATGTTCAAATGTGGAGCTCACATGTACTCTTTCAGCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

668

Amino Acids

74.85

Weight (kDa)

7.53

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	46 - 109	3.3e-18	Wall-associated receptor kinase galacturonan-binding
PK_Tyr_Ser-Thr	PF07714	359 - 627	1.1e-41	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	360 - 625	3.5e-42	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06560
malus_domestica	MD02G1242900.v1.1 MD07G1073800.v1.1
prunus_persica	Prupe.2G091700_v2.0.a1
pyrus_communis	pycom02g20960
rosa_chinensis	RchiOBHm_Chr1g0334411 RchiOBHm_Chr1g0335091
rosa_laevigata	RLG00000029393 RLG00000029397 RLG00000029398
rosa_multiflora	Rmu_co8496191.1_g000001 Rmu_sc0002714.1_g000004 Rmu_ssc0000047.1_g000022
rosa_roxburghii	Rroxscaffold_4G00316160 Rroxscaffold_4G00316200 Rroxscaffold_4G00316870
rosa_rugosa	Rorug01G0119000 Rorug01G0119100 Rorug01G0119200
rosa_samantha	Rh1AG138600 Rh1AG141800 Rh1BG110300 Rh1BG111200 Rh1CG130600 Rh1CG133700 Rh1DG142900 Rh1DG146600 Rh1DG148100
rosa_wichuraiana	Rw0G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1356, 1593
AatII	GACGTC	2 cut(s)	162, 1629
AccII	CGCG	3 cut(s)	751, 843, 1275
AciI	CCGC	6 cut(s)	81, 153, 749, 841, 843, 1910
AclWI	GGATC	7 cut(s)	94, 191, 320, 739, 867, 1332, 1345
AcoI	YGGCCR	2 cut(s)	419, 1135
AcsI	RAATTY	3 cut(s)	469, 1428, 1474
AcuI	CTGAAG	1 cut(s)	756
AcyI	GRCGYC	2 cut(s)	159, 1626
AfaI	GTAC	6 cut(s)	133, 278, 686, 1040, 1774, 1990
AfiI	CCNNNNNNNGG	3 cut(s)	36, 363, 1723
AflIII	ACRYGT	2 cut(s)	134, 1985
AgsI	TTSAA	9 cut(s)	402, 451, 1078, 1269, 1400, 1545, 1832, 1857, 1971
AjnI	CCWGG	3 cut(s)	328, 362, 760
AjuI	GAANNNNNNNTTGG	2 cut(s)	961, 993
Alw21I	GWGCWC	1 cut(s)	1983
Alw26I	GTCTC	2 cut(s)	1311, 1543
AlwI	GGATC	7 cut(s)	94, 191, 320, 739, 867, 1332, 1345
AlwNI	CAGNNNCTG	1 cut(s)	437
Ama87I	CYCGRG	2 cut(s)	546, 1580
AoxI	GGCC	7 cut(s)	288, 331, 375, 419, 535, 802, 1135
ApeKI	GCWGC	6 cut(s)	256, 753, 872, 896, 1240, 1550
ApoI	RAATTY	3 cut(s)	469, 1428, 1474
ArsI	GACNNNNNNTTYG	2 cut(s)	1611, 1643
AseI	ATTAAT	1 cut(s)	1793
Asp700I	GAANNNNTTC	2 cut(s)	622, 1005
AspLEI	GCGC	5 cut(s)	261, 353, 753, 1275, 1277
AspS9I	GGNCC	3 cut(s)	613, 802, 932
AsuC2I	CCSGG	2 cut(s)	547, 548
AsuNHI	GCTAGC	2 cut(s)	1504, 2000
AvaI	CYCGRG	2 cut(s)	546, 1580
AvaII	GGWCC	2 cut(s)	613, 932
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BalI	TGGCCA	2 cut(s)	421, 1137
BamHI	GGATCC	1 cut(s)	1337
BanII	GRGCYC	1 cut(s)	1983
BarI	GAAGNNNNNNTAC	2 cut(s)	580, 612
BauI	CACGAG	2 cut(s)	272, 1192
BbsI	GAAGAC	1 cut(s)	979
Bbv12I	GWGCWC	1 cut(s)	1983
BbvI	GCAGC	6 cut(s)	243, 765, 859, 883, 1252, 1562
BccI	CCATC	7 cut(s)	430, 577, 1064, 1349, 1645, 1739, 1763
BciT130I	CCWGG	3 cut(s)	330, 364, 762
BciVI	GTATCC	1 cut(s)	1562
BclI	TGATCA	2 cut(s)	591, 1732
BcnI	CCSGG	2 cut(s)	547, 548
BcoDI	GTCTC	2 cut(s)	1311, 1543
BfaI	CTAG	3 cut(s)	1505, 1901, 2001
BfmI	CTRYAG	2 cut(s)	996, 1630
BfuI	GTATCC	1 cut(s)	1562
BisI	GCNGC	8 cut(s)	154, 257, 754, 873, 897, 1241, 1551, 1910
BlpI	GCTNAGC	1 cut(s)	668
BlsI	GCNGC	8 cut(s)	155, 258, 755, 874, 898, 1242, 1552, 1911
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	5 cut(s)	330, 364, 547, 548, 762
Bme18I	GGWCC	2 cut(s)	613, 932
BmeT110I	CYCGRG	2 cut(s)	546, 1580
BmgT120I	GGNCC	3 cut(s)	613, 802, 932
BmiI	GGNNCC	4 cut(s)	23, 224, 1147, 1339
BmrFI	CCNGG	5 cut(s)	330, 364, 547, 548, 762
BmrI	ACTGGG	1 cut(s)	245
BmsI	GCATC	5 cut(s)	591, 765, 1417, 1542, 1866
BmtI	GCTAGC	2 cut(s)	1508, 2004
BmuI	ACTGGG	1 cut(s)	245
BoxI	GACNNNNGTC	2 cut(s)	843, 979
BpiI	GAAGAC	1 cut(s)	979
BpmI	CTGGAG	1 cut(s)	694
Bpu10I	CCTNAGC	1 cut(s)	1389
Bpu1102I	GCTNAGC	1 cut(s)	668
BpuEI	CTTGAG	2 cut(s)	356, 1684
BpuMI	CCSGG	2 cut(s)	547, 548
BsaAI	YACGTR	2 cut(s)	135, 283
BsaHI	GRCGYC	2 cut(s)	159, 1626
BsaI	GGTCTC	1 cut(s)	1311
BsaJI	CCNNGG	4 cut(s)	362, 546, 760, 841
BsaXI	ACNNNNNCTCC	4 cut(s)	551, 581, 1031, 1061
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 363, 1723
Bse1I	ACTGG	6 cut(s)	251, 464, 654, 876, 900, 1520
Bse3DI	GCAATG	1 cut(s)	1572
BseBI	CCWGG	3 cut(s)	330, 364, 762
BseDI	CCNNGG	4 cut(s)	362, 546, 760, 841
BseGI	GGATG	3 cut(s)	246, 588, 756
BseLI	CCNNNNNNNGG	3 cut(s)	36, 363, 1723
BseMI	GCAATG	1 cut(s)	1572
BseMII	CTCAG	2 cut(s)	659, 1403
BseNI	ACTGG	6 cut(s)	251, 464, 654, 876, 900, 1520
BsePI	GCGCGC	1 cut(s)	1273
BseXI	GCAGC	6 cut(s)	243, 765, 859, 883, 1252, 1562
BsgI	GTGCAG	3 cut(s)	477, 589, 1259
Bsh1236I	CGCG	3 cut(s)	751, 843, 1275
Bsh1285I	CGRYCG	1 cut(s)	841
BshFI	GGCC	7 cut(s)	290, 333, 377, 421, 537, 804, 1137
BsiEI	CGRYCG	1 cut(s)	841
BsiHKAI	GWGCWC	1 cut(s)	1983
BsiHKCI	CYCGRG	2 cut(s)	546, 1580
BsiSI	CCGG	2 cut(s)	93, 547
BslFI	GGGAC	3 cut(s)	125, 529, 740
BslI	CCNNNNNNNGG	3 cut(s)	36, 363, 1723
BsmAI	GTCTC	2 cut(s)	1311, 1543
BsmBI	CGTCTC	1 cut(s)	1543
BsmFI	GGGAC	3 cut(s)	125, 529, 740
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	7 cut(s)	290, 333, 377, 421, 537, 804, 1137
Bso31I	GGTCTC	1 cut(s)	1311
BsoBI	CYCGRG	2 cut(s)	546, 1580
Bsp1286I	GDGCHC	1 cut(s)	1983
Bsp1407I	TGTACA	1 cut(s)	684
Bsp1720I	GCTNAGC	1 cut(s)	668
BspACI	CCGC	6 cut(s)	81, 153, 749, 841, 843, 1910
BspANI	GGCC	7 cut(s)	290, 333, 377, 421, 537, 804, 1137
BspCNI	CTCAG	2 cut(s)	660, 1402
BspFNI	CGCG	3 cut(s)	751, 843, 1275
BspLI	GGNNCC	4 cut(s)	23, 224, 1147, 1339
BspOI	GCTAGC	2 cut(s)	1508, 2004
BspPI	GGATC	7 cut(s)	94, 191, 320, 739, 867, 1332, 1345
BspTNI	GGTCTC	1 cut(s)	1311
BsrDI	GCAATG	1 cut(s)	1572
BsrGI	TGTACA	1 cut(s)	684
BsrI	ACTGG	6 cut(s)	251, 464, 654, 876, 900, 1520
BssECI	CCNNGG	4 cut(s)	362, 546, 760, 841
BssHII	GCGCGC	1 cut(s)	1273
BssNI	GRCGYC	2 cut(s)	159, 1626
BssSI	CACGAG	2 cut(s)	272, 1192
Bst2BI	CACGAG	2 cut(s)	272, 1192
Bst2UI	CCWGG	3 cut(s)	330, 364, 762
Bst4CI	ACNGT	5 cut(s)	131, 209, 787, 829, 1256
Bst6I	CTCTTC	2 cut(s)	1546, 1856
BstACI	GRCGYC	2 cut(s)	159, 1626
BstAUI	TGTACA	1 cut(s)	684
BstBAI	YACGTR	2 cut(s)	135, 283
BstC8I	GCNNGC	4 cut(s)	1275, 1506, 1663, 2002
BstDEI	CTNAG	2 cut(s)	668, 1389
BstDSI	CCRYGG	1 cut(s)	841
BstF5I	GGATG	3 cut(s)	246, 588, 756
BstFNI	CGCG	3 cut(s)	751, 843, 1275
BstHHI	GCGC	5 cut(s)	261, 353, 753, 1275, 1277
BstMAI	GTCTC	2 cut(s)	1311, 1543
BstMCI	CGRYCG	1 cut(s)	841
BstMWI	GCNNNNNNNGC	3 cut(s)	534, 1098, 1915
BstNI	CCWGG	3 cut(s)	330, 364, 762
BstNSI	RCATGY	3 cut(s)	744, 1968, 1989
BstPAI	GACNNNNGTC	2 cut(s)	843, 979
BstSCI	CCNGG	5 cut(s)	328, 362, 545, 546, 760
BstSFI	CTRYAG	2 cut(s)	996, 1630
BstUI	CGCG	3 cut(s)	751, 843, 1275
BstV1I	GCAGC	6 cut(s)	243, 765, 859, 883, 1252, 1562
BstV2I	GAAGAC	1 cut(s)	979
BstX2I	RGATCY	6 cut(s)	99, 196, 325, 731, 859, 1337
BstYI	RGATCY	6 cut(s)	99, 196, 325, 731, 859, 1337
BsuI	GTATCC	1 cut(s)	1562
BsuRI	GGCC	7 cut(s)	290, 333, 377, 421, 537, 804, 1137
BtgI	CCRYGG	1 cut(s)	841
BtgZI	GCGATG	1 cut(s)	1782
BtsCI	GGATG	3 cut(s)	246, 588, 756
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	7 cut(s)	205, 258, 471, 489, 883, 907, 1527
Cac8I	GCNNGC	4 cut(s)	1275, 1506, 1663, 2002
CaiI	CAGNNNCTG	1 cut(s)	437
CfoI	GCGC	5 cut(s)	261, 353, 753, 1275, 1277
Cfr13I	GGNCC	3 cut(s)	613, 802, 932
Cfr42I	CCGCGG	1 cut(s)	844
Cfr9I	CCCGGG	1 cut(s)	546
Csp6I	GTAC	6 cut(s)	132, 277, 685, 1039, 1773, 1989
CspCI	CAANNNNNGTGG	2 cut(s)	300, 335
CviAII	CATG	8 cut(s)	307, 741, 1226, 1294, 1722, 1730, 1965, 1986
CviQI	GTAC	6 cut(s)	132, 277, 685, 1039, 1773, 1989
DdeI	CTNAG	2 cut(s)	668, 1389
DraI	TTTAAA	1 cut(s)	1117
EaeI	YGGCCR	2 cut(s)	419, 1135
Eam1104I	CTCTTC	2 cut(s)	1546, 1856
EarI	CTCTTC	2 cut(s)	1546, 1856
Ecl136II	GAGCTC	1 cut(s)	1981
Eco24I	GRGCYC	1 cut(s)	1983
Eco31I	GGTCTC	1 cut(s)	1311
Eco32I	GATATC	1 cut(s)	1444
Eco47I	GGWCC	2 cut(s)	613, 932
Eco53kI	GAGCTC	1 cut(s)	1981
Eco57I	CTGAAG	1 cut(s)	756
Eco88I	CYCGRG	2 cut(s)	546, 1580
EcoICRI	GAGCTC	1 cut(s)	1981
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	3 cut(s)	328, 362, 760
EcoRV	GATATC	1 cut(s)	1444
EcoT38I	GRGCYC	1 cut(s)	1983
Esp3I	CGTCTC	1 cut(s)	1543
FaeI	CATG	8 cut(s)	310, 744, 1229, 1297, 1725, 1733, 1968, 1989
FalI	AAGNNNNNCTT	6 cut(s)	163, 195, 211, 243, 1027, 1059
FaqI	GGGAC	3 cut(s)	125, 529, 740
FatI	CATG	8 cut(s)	306, 740, 1225, 1293, 1721, 1729, 1964, 1985
FauNDI	CATATG	1 cut(s)	540
FbaI	TGATCA	2 cut(s)	591, 1732
Fnu4HI	GCNGC	8 cut(s)	154, 257, 754, 873, 897, 1241, 1551, 1910
FokI	GGATG	3 cut(s)	233, 595, 743
FriOI	GRGCYC	1 cut(s)	1983
Fsp4HI	GCNGC	8 cut(s)	154, 257, 754, 873, 897, 1241, 1551, 1910
FspBI	CTAG	3 cut(s)	1505, 1901, 2001
GlaI	GCGC	5 cut(s)	260, 352, 752, 1274, 1276
GluI	GCNGC	8 cut(s)	154, 257, 754, 873, 897, 1241, 1551, 1910
GsuI	CTGGAG	1 cut(s)	694
HaeIII	GGCC	7 cut(s)	290, 333, 377, 421, 537, 804, 1137
HapII	CCGG	2 cut(s)	93, 547
HhaI	GCGC	5 cut(s)	261, 353, 753, 1275, 1277
Hin1I	GRCGYC	2 cut(s)	159, 1626
Hin1II	CATG	8 cut(s)	310, 744, 1229, 1297, 1725, 1733, 1968, 1989
Hin6I	GCGC	5 cut(s)	259, 351, 751, 1273, 1275
HinP1I	GCGC	5 cut(s)	259, 351, 751, 1273, 1275
HincII	GTYRAC	1 cut(s)	984
HindII	GTYRAC	1 cut(s)	984
HindIII	AAGCTT	1 cut(s)	1185
HinfI	GANTC	6 cut(s)	398, 434, 1074, 1219, 1866, 1957
HpaII	CCGG	2 cut(s)	93, 547
Hpy166II	GTNNAC	3 cut(s)	163, 487, 984
Hpy188I	TCNGA	6 cut(s)	317, 433, 736, 954, 1069, 1495
Hpy188III	TCNNGA	7 cut(s)	272, 448, 632, 725, 1192, 1310, 1580
Hpy8I	GTNNAC	3 cut(s)	163, 487, 984
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	9 cut(s)	153, 280, 368, 1088, 1209, 1328, 1662, 1863, 1929
HpyCH4III	ACNGT	5 cut(s)	131, 209, 787, 829, 1256
HpyCH4IV	ACGT	5 cut(s)	134, 159, 282, 703, 1626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	534, 1098, 1915
HpyF3I	CTNAG	2 cut(s)	668, 1389
HpySE526I	ACGT	5 cut(s)	134, 159, 282, 703, 1626
Hsp92I	GRCGYC	2 cut(s)	159, 1626
Hsp92II	CATG	8 cut(s)	310, 744, 1229, 1297, 1725, 1733, 1968, 1989
HspAI	GCGC	5 cut(s)	259, 351, 751, 1273, 1275
Ksp22I	TGATCA	2 cut(s)	591, 1732
KspI	CCGCGG	1 cut(s)	844
LmnI	GCTCC	4 cut(s)	21, 1145, 1582, 1978
Lsp1109I	GCAGC	6 cut(s)	243, 765, 859, 883, 1252, 1562
LweI	GCATC	5 cut(s)	591, 765, 1417, 1542, 1866
MaeI	CTAG	3 cut(s)	1505, 1901, 2001
MaeII	ACGT	5 cut(s)	134, 159, 282, 703, 1626
MaeIII	GTNAC	7 cut(s)	236, 404, 439, 1016, 1250, 1810, 1867
MflI	RGATCY	6 cut(s)	99, 196, 325, 731, 859, 1337
MhlI	GDGCHC	1 cut(s)	1983
MlsI	TGGCCA	2 cut(s)	421, 1137
MluNI	TGGCCA	2 cut(s)	421, 1137
MlyI	GAGTC	1 cut(s)	1875
MmeI	TCCRAC	4 cut(s)	761, 803, 1074, 1360
MnlI	CCTC	9 cut(s)	35, 100, 527, 923, 1255, 1461, 1550, 1729, 1774
Mox20I	TGGCCA	2 cut(s)	421, 1137
MroXI	GAANNNNTTC	2 cut(s)	622, 1005
MscI	TGGCCA	2 cut(s)	421, 1137
MslI	CAYNNNNRTG	4 cut(s)	251, 599, 1230, 1874
Msp20I	TGGCCA	2 cut(s)	421, 1137
MspA1I	CMGCKG	1 cut(s)	843
MspI	CCGG	2 cut(s)	93, 547
MspR9I	CCNGG	5 cut(s)	330, 364, 547, 548, 762
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	3 cut(s)	330, 364, 762
MvnI	CGCG	3 cut(s)	751, 843, 1275
MwoI	GCNNNNNNNGC	3 cut(s)	534, 1098, 1915
NciI	CCSGG	2 cut(s)	547, 548
NdeI	CATATG	1 cut(s)	540
NheI	GCTAGC	2 cut(s)	1504, 2000
NlaIII	CATG	8 cut(s)	310, 744, 1229, 1297, 1725, 1733, 1968, 1989
NlaIV	GGNNCC	4 cut(s)	23, 224, 1147, 1339
NmuCI	GTSAC	4 cut(s)	236, 404, 1016, 1867
NspI	RCATGY	3 cut(s)	744, 1968, 1989
PacI	TTAATTAA	1 cut(s)	1797
PauI	GCGCGC	1 cut(s)	1273
PciI	ACATGT	1 cut(s)	1985
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	1 cut(s)	528
PdmI	GAANNNNTTC	2 cut(s)	622, 1005
PfeI	GAWTC	5 cut(s)	398, 434, 1074, 1219, 1957
PkrI	GCNGC	8 cut(s)	155, 258, 755, 874, 898, 1242, 1552, 1911
PleI	GAGTC	1 cut(s)	1874
PpsI	GAGTC	1 cut(s)	1874
Ppu21I	YACGTR	2 cut(s)	135, 283
PscI	ACATGT	1 cut(s)	1985
PshAI	GACNNNNGTC	2 cut(s)	843, 979
PshBI	ATTAAT	1 cut(s)	1793
PsiI	TTATAA	2 cut(s)	1356, 1593
Psp124BI	GAGCTC	1 cut(s)	1983
Psp6I	CCWGG	3 cut(s)	328, 362, 760
PspGI	CCWGG	3 cut(s)	328, 362, 760
PspN4I	GGNNCC	4 cut(s)	23, 224, 1147, 1339
PspPI	GGNCC	3 cut(s)	613, 802, 932
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	6 cut(s)	99, 196, 325, 731, 859, 1337
PteI	GCGCGC	1 cut(s)	1273
RsaI	GTAC	6 cut(s)	133, 278, 686, 1040, 1774, 1990
RsaNI	GTAC	6 cut(s)	132, 277, 685, 1039, 1773, 1989
RseI	CAYNNNNRTG	4 cut(s)	251, 599, 1230, 1874
SacI	GAGCTC	1 cut(s)	1983
SacII	CCGCGG	1 cut(s)	844
SatI	GCNGC	8 cut(s)	154, 257, 754, 873, 897, 1241, 1551, 1910
Sau96I	GGNCC	3 cut(s)	613, 802, 932
ScaI	AGTACT	1 cut(s)	278
SchI	GAGTC	1 cut(s)	1875
ScrFI	CCNGG	5 cut(s)	330, 364, 547, 548, 762
SduI	GDGCHC	1 cut(s)	1983
SfaNI	GCATC	5 cut(s)	591, 765, 1417, 1542, 1866
SfcI	CTRYAG	2 cut(s)	996, 1630
Sfr303I	CCGCGG	1 cut(s)	844
SgrBI	CCGCGG	1 cut(s)	844
SinI	GGWCC	2 cut(s)	613, 932
SmaI	CCCGGG	1 cut(s)	548
SmiMI	CAYNNNNRTG	4 cut(s)	251, 599, 1230, 1874
SmlI	CTYRAG	2 cut(s)	335, 1699
SmoI	CTYRAG	2 cut(s)	335, 1699
SsiI	CCGC	6 cut(s)	81, 153, 749, 841, 843, 1910
SspI	AATATT	3 cut(s)	414, 1403, 1459
SspMI	CTAG	3 cut(s)	1505, 1901, 2001
SstI	GAGCTC	1 cut(s)	1983
StyD4I	CCNGG	5 cut(s)	328, 362, 545, 546, 760
TaaI	ACNGT	5 cut(s)	131, 209, 787, 829, 1256
TaiI	ACGT	5 cut(s)	137, 162, 285, 706, 1629
TaqI	TCGA	8 cut(s)	47, 184, 532, 599, 693, 814, 837, 1849
TaqII	GACCGA	1 cut(s)	630
TatI	WGTACW	3 cut(s)	276, 684, 1988
TauI	GCSGC	2 cut(s)	156, 1912
TfiI	GAWTC	5 cut(s)	398, 434, 1074, 1219, 1957
TscAI	CASTG	7 cut(s)	212, 258, 471, 496, 883, 907, 1527
TseFI	GTSAC	4 cut(s)	236, 404, 1016, 1867
TseI	GCWGC	6 cut(s)	256, 753, 872, 896, 1240, 1550
Tsp45I	GTSAC	4 cut(s)	236, 404, 1016, 1867
TspDTI	ATGAA	7 cut(s)	660, 1211, 1282, 1602, 1850, 1874, 1908
TspGWI	ACGGA	3 cut(s)	423, 621, 744
TspMI	CCCGGG	1 cut(s)	546
TspRI	CASTG	7 cut(s)	212, 258, 471, 496, 883, 907, 1527
VpaK11BI	GGWCC	2 cut(s)	613, 932
VspI	ATTAAT	1 cut(s)	1793
XapI	RAATTY	3 cut(s)	469, 1428, 1474
XceI	RCATGY	3 cut(s)	744, 1968, 1989
XmaI	CCCGGG	1 cut(s)	546
XmnI	GAANNNNTTC	2 cut(s)	622, 1005
XspI	CTAG	3 cut(s)	1505, 1901, 2001
ZraI	GACGTC	2 cut(s)	160, 1627
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.