Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000047.1

Orthogroup ID

OG0005541

Physical Location & Seq

Genomic Coordinates Reverse (-)

105280 .. 106451

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000047.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgaactgtgataaaactctgatatttttaggtcggagagcaacaaagcgtccactaaggcttgttgacatacccgttgtgaccccgatgagtcttggactagtgaagtatgcaggccaagcctggtgtgacttatcatccttgaggtgggtcagttcaggagctgcaccattgagcaaagaagtggctgatgagttcagactgaagtttccttgggttgagttgaggccggggtatggcctaactgctttgggaccttacaaggaaggagagttgtggctgaagagtccaactataatgaaagagtatctggggaatgtggtagcaacgattgctagtattgatgaagatgggagttcatcaagcataatggatatcagaattggaagcaattctcttgagccatctcaaattcttgatgctgctgtcgtaccggttgaagatgaagaagtaggacaaataccaatggcatatgtggtgagagcagctagtactgaactgatcactgaagaccaaagtgacccccctcaaaaaagtcagaaaagttgggtttatatctgccattccaagatcagctgcaagcaaaatcttgaggaaggaacttgttggtttacaaagcaaacagcaaatcgtctccagactataatgccttttcctgcaggccaacttctttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

225

Amino Acids

24.87

Weight (kDa)

5.35

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06560
malus_domestica	MD02G1242900.v1.1 MD07G1073800.v1.1
prunus_persica	Prupe.2G091700_v2.0.a1
pyrus_communis	pycom02g20960
rosa_chinensis	RchiOBHm_Chr1g0334411 RchiOBHm_Chr1g0335091
rosa_laevigata	RLG00000029393 RLG00000029397 RLG00000029398
rosa_multiflora	Rmu_co8496191.1_g000001 Rmu_sc0002714.1_g000004 Rmu_ssc0000047.1_g000022
rosa_roxburghii	Rroxscaffold_4G00316160 Rroxscaffold_4G00316200 Rroxscaffold_4G00316870
rosa_rugosa	Rorug01G0119000 Rorug01G0119100 Rorug01G0119200
rosa_samantha	Rh1AG138600 Rh1AG141800 Rh1BG110300 Rh1BG111200 Rh1CG130600 Rh1CG133700 Rh1DG142900 Rh1DG146600 Rh1DG148100
rosa_wichuraiana	Rw0G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	411
AcuI	CTGAAG	3 cut(s)	224, 302, 528
AfaI	GTAC	2 cut(s)	432, 493
AfiI	CCNNNNNNNGG	2 cut(s)	147, 236
AgeI	ACCGGT	1 cut(s)	433
AgsI	TTSAA	1 cut(s)	440
AhlI	ACTAGT	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	3 cut(s)	164, 488, 576
AluI	AGCT	3 cut(s)	164, 488, 576
Alw26I	GTCTC	1 cut(s)	638
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	4 cut(s)	115, 227, 238, 661
ApeKI	GCWGC	4 cut(s)	164, 422, 485, 576
ApoI	RAATTY	1 cut(s)	411
AsiGI	ACCGGT	1 cut(s)	433
Asp700I	GAANNNNTTC	1 cut(s)	391
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	516
BbvI	GCAGC	4 cut(s)	151, 409, 497, 563
BccI	CCATC	2 cut(s)	344, 412
BciT130I	CCWGG	1 cut(s)	124
BclI	TGATCA	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	638
BcuI	ACTAGT	1 cut(s)	100
BfaI	CTAG	3 cut(s)	101, 336, 489
BfmI	CTRYAG	1 cut(s)	657
BisI	GCNGC	4 cut(s)	165, 423, 486, 577
BlsI	GCNGC	4 cut(s)	166, 424, 487, 578
BmcAI	AGTACT	1 cut(s)	493
Bme1390I	CCNGG	2 cut(s)	124, 231
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	2 cut(s)	124, 231
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	620
BpuEI	CTTGAG	3 cut(s)	163, 419, 611
BpuMI	CCSGG	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	212, 230
BsaWI	WCCGGW	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 236
Bse118I	RCCGGY	1 cut(s)	433
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	212, 230
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	2 cut(s)	147, 236
BseXI	GCAGC	4 cut(s)	151, 409, 497, 563
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	4 cut(s)	117, 229, 240, 663
BshTI	ACCGGT	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	230, 434
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	2 cut(s)	147, 236
BsmAI	GTCTC	1 cut(s)	638
BsmBI	CGTCTC	1 cut(s)	638
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	4 cut(s)	117, 229, 240, 663
Bsp143I	GATC	2 cut(s)	501, 570
BspANI	GGCC	4 cut(s)	117, 229, 240, 663
BspLI	GGNNCC	1 cut(s)	255
BspMAI	CTGCAG	1 cut(s)	661
BsrFI	RCCGGY	1 cut(s)	433
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	212, 230
BssMI	GATC	2 cut(s)	501, 570
BssT1I	CCWWGG	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstC8I	GCNNGC	3 cut(s)	115, 581, 661
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	137
BstKTI	GATC	2 cut(s)	504, 573
BstMAI	GTCTC	1 cut(s)	638
BstMBI	GATC	2 cut(s)	501, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 332
BstNI	CCWGG	1 cut(s)	124
BstSCI	CCNGG	2 cut(s)	122, 229
BstSFI	CTRYAG	1 cut(s)	657
BstV1I	GCAGC	4 cut(s)	151, 409, 497, 563
BstV2I	GAAGAC	1 cut(s)	516
BsuRI	GGCC	4 cut(s)	117, 229, 240, 663
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	3 cut(s)	115, 581, 661
CaiI	CAGNNNCTG	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	431, 492
CspAI	ACCGGT	1 cut(s)	433
CviQI	GTAC	2 cut(s)	431, 492
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	2 cut(s)	503, 572
DpnII	GATC	2 cut(s)	501, 570
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	212
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	3 cut(s)	224, 302, 528
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	122
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
Esp3I	CGTCTC	1 cut(s)	638
FaqI	GGGAC	1 cut(s)	267
FauNDI	CATATG	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	4 cut(s)	165, 423, 486, 577
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	4 cut(s)	165, 423, 486, 577
FspBI	CTAG	3 cut(s)	101, 336, 489
GluI	GCNGC	4 cut(s)	165, 423, 486, 577
GsuI	CTGGAG	1 cut(s)	620
HaeIII	GGCC	4 cut(s)	117, 229, 240, 663
HapII	CCGG	2 cut(s)	230, 434
HgaI	GACGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	2 cut(s)	91, 286
HpaII	CCGG	2 cut(s)	230, 434
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	3 cut(s)	53, 67, 612
Hpy188I	TCNGA	5 cut(s)	21, 36, 200, 380, 540
Hpy188III	TCNNGA	5 cut(s)	159, 398, 416, 590, 637
Hpy8I	GTNNAC	3 cut(s)	53, 67, 612
HpyAV	CCTTC	2 cut(s)	260, 590
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	4 cut(s)	113, 167, 579, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 332
HpyF3I	CTNAG	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	2 cut(s)	501, 570
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	4 cut(s)	151, 409, 497, 563
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	3 cut(s)	101, 336, 489
MaeIII	GTNAC	3 cut(s)	79, 128, 518
MalI	GATC	2 cut(s)	503, 572
MboI	GATC	2 cut(s)	501, 570
MboII	GAAGA	5 cut(s)	295, 359, 452, 458, 521
MluCI	AATT	3 cut(s)	381, 391, 411
MlyI	GAGTC	2 cut(s)	100, 295
MmeI	TCCRAC	2 cut(s)	14, 314
MnlI	CCTC	4 cut(s)	138, 219, 537, 586
MroXI	GAANNNNTTC	1 cut(s)	391
MspA1I	CMGCKG	1 cut(s)	576
MspI	CCGG	2 cut(s)	230, 434
MspR9I	CCNGG	2 cut(s)	124, 231
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	119, 332
NciI	CCSGG	1 cut(s)	231
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	2 cut(s)	501, 570
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	3 cut(s)	79, 128, 518
PdmI	GAANNNNTTC	1 cut(s)	391
PinAI	ACCGGT	1 cut(s)	433
PkrI	GCNGC	4 cut(s)	166, 424, 487, 578
PleI	GAGTC	2 cut(s)	99, 294
PpsI	GAGTC	2 cut(s)	99, 294
PpuMI	RGGWCCY	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	254
PspPPI	RGGWCCY	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	661
PstNI	CAGNNNCTG	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	576
RsaI	GTAC	2 cut(s)	432, 493
RsaNI	GTAC	2 cut(s)	431, 492
SatI	GCNGC	4 cut(s)	165, 423, 486, 577
Sau3AI	GATC	2 cut(s)	501, 570
Sau96I	GGNCC	1 cut(s)	254
SbfI	CCTGCAGG	1 cut(s)	661
ScaI	AGTACT	1 cut(s)	493
SchI	GAGTC	2 cut(s)	100, 295
ScrFI	CCNGG	2 cut(s)	124, 231
SdaI	CCTGCAGG	1 cut(s)	661
SetI	ASST	6 cut(s)	34, 149, 166, 259, 490, 578
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	657
SinI	GGWCC	1 cut(s)	254
SmlI	CTYRAG	3 cut(s)	142, 398, 590
SmoI	CTYRAG	3 cut(s)	142, 398, 590
SpeI	ACTAGT	1 cut(s)	100
Sse8387I	CCTGCAGG	1 cut(s)	661
Sse9I	AATT	3 cut(s)	381, 391, 411
SspMI	CTAG	3 cut(s)	101, 336, 489
StyD4I	CCNGG	2 cut(s)	122, 229
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	8
TasI	AATT	3 cut(s)	381, 391, 411
TatI	WGTACW	1 cut(s)	491
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	3 cut(s)	79, 128, 518
TseI	GCWGC	4 cut(s)	164, 422, 485, 576
Tsp45I	GTSAC	3 cut(s)	79, 128, 518
TspDTI	ATGAA	6 cut(s)	17, 314, 348, 360, 459, 663
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	391
XspI	CTAG	3 cut(s)	101, 336, 489
ZrmI	AGTACT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.