Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005541

Physical Location & Seq

Genomic Coordinates Reverse (-)

30198849 .. 30201877

Gene Structure 3029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG142900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGACTAAAACACAAACTTCTGTCAGTCTCTCTTGTCTTCAAAATACGAGAGCGAATAAGAAGATTGTGGCCCAGCGGCTTTTGAGCATTGGTGTCCCAGAAGAGGAGGAGCCAACTATTACTGAAGAAATATTTAAGCAGGTTGATGTAGCCATCCCCGAACTGCCTCTAGTTGTGATAATAGTGGACGTGACCACTAGGAATGGCTATATCCGTGGCATATACTTGAATTCCATAAACAAGAGCTTTAGCCCTACCTTTGGTAAAAGGGTGGTTTTGCTGAGCATTCAATTCAAGTCTTCTGCTGGACATGCTAGGTTTTTGGAGGTCAGGAGAGCACCAAAGCGTCCACTAAGGGTTGACATACCCGTTGTGACCCCGATGAGTCTTGGACTAGTGAAGTATGCAGGCCAAGCCTGGTGTGACTTATCATCCTTGAGGTGGGTCAGTTCAGGAGCTGCACCATTGAGCAAAGAAGTGGCTGATGAGTTCAGACTGAAGTTTCCTTGGGTTGAGTTGAGGCCGGGGTATGGCCTAACTGCTTTGGGACCTTATAAGGAAGGAGAGTTGTGGCTGAAGAGTCCAACTATAATGAAAGAGATGGACTGCTTTACATTGTTGATCGTATCAAGGAGTTCATCAAGCATAATGGATATCAGGGTTGAAGATGAAGAAGTAGGACAAATACCAATGGCATATGTGGTGAGAGCAGCTAGTACTGAACTGATCACTGAAGACCAAGTGGCCCCCTACAAAAAAGTCGAAAAGTTGGGTTTATATCTGCCATTCCAAGATCAGCTGCAAGCAAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

271

Amino Acids

30.31

Weight (kDa)

8.86

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06560
malus_domestica	MD02G1242900.v1.1 MD07G1073800.v1.1
prunus_persica	Prupe.2G091700_v2.0.a1
pyrus_communis	pycom02g20960
rosa_chinensis	RchiOBHm_Chr1g0334411 RchiOBHm_Chr1g0335091
rosa_laevigata	RLG00000029393 RLG00000029397 RLG00000029398
rosa_multiflora	Rmu_co8496191.1_g000001 Rmu_sc0002714.1_g000004 Rmu_ssc0000047.1_g000022
rosa_roxburghii	Rroxscaffold_4G00316160 Rroxscaffold_4G00316200 Rroxscaffold_4G00316870
rosa_rugosa	Rorug01G0119000 Rorug01G0119100 Rorug01G0119200
rosa_samantha	Rh1AG138600 Rh1AG141800 Rh1BG110300 Rh1BG111200 Rh1CG130600 Rh1CG133700 Rh1DG142900 Rh1DG146600 Rh1DG148100
rosa_wichuraiana	Rw0G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
Acc36I	ACCTGC	1 cut(s)	130
AciI	CCGC	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	4 cut(s)	144, 518, 596, 753
AfaI	GTAC	1 cut(s)	718
AfiI	CCNNNNNNNGG	4 cut(s)	103, 260, 441, 530
AgsI	TTSAA	5 cut(s)	41, 229, 290, 295, 665
AhlI	ACTAGT	1 cut(s)	394
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	4 cut(s)	246, 458, 713, 799
AluI	AGCT	4 cut(s)	246, 458, 713, 799
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	458
AoxI	GGCC	5 cut(s)	69, 409, 521, 532, 744
ApeKI	GCWGC	3 cut(s)	458, 710, 799
ApoI	RAATTY	1 cut(s)	229
AspS9I	GGNCC	3 cut(s)	70, 548, 745
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	1 cut(s)	715
AvaII	GGWCC	1 cut(s)	548
BbsI	GAAGAC	3 cut(s)	29, 291, 741
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	3 cut(s)	445, 722, 786
BccI	CCATC	2 cut(s)	161, 595
BciT130I	CCWGG	1 cut(s)	418
BclI	TGATCA	1 cut(s)	726
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	32
BcuI	ACTAGT	1 cut(s)	394
BfaI	CTAG	5 cut(s)	170, 198, 315, 395, 714
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	4 cut(s)	77, 459, 711, 800
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	4 cut(s)	78, 460, 712, 801
BmcAI	AGTACT	1 cut(s)	718
Bme1390I	CCNGG	2 cut(s)	418, 525
Bme18I	GGWCC	1 cut(s)	548
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	70, 548, 745
BmiI	GGNNCC	3 cut(s)	111, 549, 747
BmrFI	CCNGG	2 cut(s)	418, 525
BpiI	GAAGAC	3 cut(s)	29, 291, 741
Bpu1102I	GCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	525
BsaJI	CCNNGG	3 cut(s)	214, 506, 524
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 260, 441, 530
BseBI	CCWGG	1 cut(s)	418
BseDI	CCNNGG	3 cut(s)	214, 506, 524
BseGI	GGATG	2 cut(s)	153, 431
BseLI	CCNNNNNNNGG	4 cut(s)	103, 260, 441, 530
BseMII	CTCAG	1 cut(s)	272
BseRI	GAGGAG	2 cut(s)	119, 122
BseXI	GCAGC	3 cut(s)	445, 722, 786
BseYI	CCCAGC	1 cut(s)	72
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	5 cut(s)	71, 411, 523, 534, 746
BsiHKAI	GWGCWC	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	524
BslFI	GGGAC	2 cut(s)	80, 561
BslI	CCNNNNNNNGG	4 cut(s)	103, 260, 441, 530
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	80, 561
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	5 cut(s)	71, 411, 523, 534, 746
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	3 cut(s)	621, 726, 793
Bsp1720I	GCTNAGC	1 cut(s)	281
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	5 cut(s)	71, 411, 523, 534, 746
BspCNI	CTCAG	1 cut(s)	273
BspLI	GGNNCC	3 cut(s)	111, 549, 747
BspMI	ACCTGC	1 cut(s)	130
BssECI	CCNNGG	3 cut(s)	214, 506, 524
BssMI	GATC	3 cut(s)	621, 726, 793
BssT1I	CCWWGG	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	418
Bst6I	CTCTTC	2 cut(s)	96, 572
BstC8I	GCNNGC	2 cut(s)	409, 804
BstDEI	CTNAG	2 cut(s)	281, 353
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	153, 431
BstKTI	GATC	3 cut(s)	624, 729, 796
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	621, 726, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 413
BstNI	CCWGG	1 cut(s)	418
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	416, 523
BstV1I	GCAGC	3 cut(s)	445, 722, 786
BstV2I	GAAGAC	3 cut(s)	29, 291, 741
BsuRI	GGCC	5 cut(s)	71, 411, 523, 534, 746
BtgI	CCRYGG	1 cut(s)	214
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	153, 431
BtsIMutI	CAGTG	1 cut(s)	729
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	2 cut(s)	409, 804
CaiI	CAGNNNCTG	1 cut(s)	458
Cfr13I	GGNCC	3 cut(s)	70, 548, 745
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	717
CviAII	CATG	1 cut(s)	311
CviQI	GTAC	1 cut(s)	717
DdeI	CTNAG	2 cut(s)	281, 353
DpnI	GATC	3 cut(s)	623, 728, 795
DpnII	GATC	3 cut(s)	621, 726, 793
Eam1104I	CTCTTC	2 cut(s)	96, 572
EarI	CTCTTC	2 cut(s)	96, 572
Eco130I	CCWWGG	1 cut(s)	506
Eco32I	GATATC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	548
Eco57I	CTGAAG	4 cut(s)	144, 518, 596, 753
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRI	GAATTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	416
EcoRV	GATATC	1 cut(s)	655
EcoT14I	CCWWGG	1 cut(s)	506
ErhI	CCWWGG	1 cut(s)	506
FaeI	CATG	1 cut(s)	314
FaqI	GGGAC	2 cut(s)	80, 561
FatI	CATG	1 cut(s)	310
FauNDI	CATATG	1 cut(s)	697
FbaI	TGATCA	1 cut(s)	726
Fnu4HI	GCNGC	4 cut(s)	77, 459, 711, 800
FokI	GGATG	2 cut(s)	140, 418
Fsp4HI	GCNGC	4 cut(s)	77, 459, 711, 800
FspBI	CTAG	5 cut(s)	170, 198, 315, 395, 714
GluI	GCNGC	4 cut(s)	77, 459, 711, 800
GsaI	CCCAGC	1 cut(s)	76
HaeIII	GGCC	5 cut(s)	71, 411, 523, 534, 746
HapII	CCGG	1 cut(s)	524
HgaI	GACGC	1 cut(s)	335
Hin1II	CATG	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	385, 580
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	1 cut(s)	715
Hpy166II	GTNNAC	3 cut(s)	187, 350, 361
Hpy188I	TCNGA	1 cut(s)	494
Hpy188III	TCNNGA	3 cut(s)	331, 453, 813
Hpy8I	GTNNAC	3 cut(s)	187, 350, 361
HpyAV	CCTTC	1 cut(s)	554
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	3 cut(s)	407, 461, 802
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 413
HpyF3I	CTNAG	2 cut(s)	281, 353
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	314
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	3 cut(s)	621, 726, 793
LmnI	GCTCC	2 cut(s)	109, 455
Lsp1109I	GCAGC	3 cut(s)	445, 722, 786
MaeI	CTAG	5 cut(s)	170, 198, 315, 395, 714
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	3 cut(s)	190, 373, 422
MalI	GATC	3 cut(s)	623, 728, 795
MboI	GATC	3 cut(s)	621, 726, 793
MboII	GAAGA	9 cut(s)	29, 73, 113, 137, 291, 589, 677, 683, 746
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	2 cut(s)	229, 290
MlyI	GAGTC	2 cut(s)	394, 589
MmeI	TCCRAC	1 cut(s)	608
MnlI	CCTC	6 cut(s)	97, 100, 177, 319, 432, 513
MseI	TTAA	1 cut(s)	135
MspA1I	CMGCKG	2 cut(s)	76, 799
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	2 cut(s)	418, 525
Mva1269I	GAATGC	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	2 cut(s)	311, 413
NciI	CCSGG	1 cut(s)	525
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	3 cut(s)	621, 726, 793
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	3 cut(s)	111, 549, 747
NmuCI	GTSAC	3 cut(s)	190, 373, 422
NspI	RCATGY	1 cut(s)	314
PctI	GAATGC	1 cut(s)	285
PkrI	GCNGC	4 cut(s)	78, 460, 712, 801
PleI	GAGTC	2 cut(s)	393, 588
PpsI	GAGTC	2 cut(s)	393, 588
PpuMI	RGGWCCY	1 cut(s)	548
PsiI	TTATAA	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	416
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	3 cut(s)	111, 549, 747
PspPI	GGNCC	3 cut(s)	70, 548, 745
PspPPI	RGGWCCY	1 cut(s)	548
PstNI	CAGNNNCTG	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	799
RsaI	GTAC	1 cut(s)	718
RsaNI	GTAC	1 cut(s)	717
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	4 cut(s)	77, 459, 711, 800
Sau3AI	GATC	3 cut(s)	621, 726, 793
Sau96I	GGNCC	3 cut(s)	70, 548, 745
ScaI	AGTACT	1 cut(s)	718
SchI	GAGTC	2 cut(s)	394, 589
ScrFI	CCNGG	2 cut(s)	418, 525
SduI	GDGCHC	1 cut(s)	340
SinI	GGWCC	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
SpeI	ACTAGT	1 cut(s)	394
Sse9I	AATT	2 cut(s)	229, 290
SsiI	CCGC	1 cut(s)	76
SspI	AATATT	1 cut(s)	132
SspMI	CTAG	5 cut(s)	170, 198, 315, 395, 714
StyD4I	CCNGG	2 cut(s)	416, 523
StyI	CCWWGG	1 cut(s)	506
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	762
TasI	AATT	2 cut(s)	229, 290
TatI	WGTACW	1 cut(s)	716
TauI	GCSGC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	736
TseFI	GTSAC	3 cut(s)	190, 373, 422
TseI	GCWGC	3 cut(s)	458, 710, 799
Tsp45I	GTSAC	3 cut(s)	190, 373, 422
TspDTI	ATGAA	3 cut(s)	608, 627, 684
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	736
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	1 cut(s)	314
XspI	CTAG	5 cut(s)	170, 198, 315, 395, 714
ZrmI	AGTACT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.