Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005541

Physical Location & Seq

Genomic Coordinates Forward (+)

20793665 .. 20794465

Gene Structure 801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0119000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGGACATATCCACCATGTCAATGTGGTTCGATTGGTTGGATTCTGCGCAGATGGATTTAGACGAGCTCTTGTTTATGACTTCTTACCTAATGGTTCACTACAAGATTTCATTTCATCAGCAGACAATAACAATTCTTTCCTTGGTTGGAGTAAGTTGCTAGATATTTCTCTTGGAATAGCAAAAGGAATTGAATATCTGCACCAAGGATGCAATCAACGGATCCTACATTTTGATATCAAACCCCATAATATTTTGCTAGACCATAACTTCAACGCAAAGATTTCCGATTTTGGTTTGGCCAAGTTATGTTCCAAGGATCAAAGCATAGTGTCAATGACTACCGCCAGGGGAACAATGGGGTACATTGCACCTGAAGTGTTCTCCAGAAACTTTGGAAATGTGTCCTATAAGTCAGATGTCTATAGCTATGGAATGGTACTGCTTGAGATTGTAGGAGGGAGAAAGAACATTGGTTCAACCACAGAGAACACCAATGAAATTTACTACCCAGAATGGATCTATAATCTTCTAGAAGAAAAAGACGACCTACGTATCAATGTAGGGGAAGAAGGAGATGCTAAAATTGCAAAGAGACTTGCGATTGTAGGTCTCTGGTGCATTCAATGGCACCCTGCAGATCGTCCTTCTATGCAAGGGGTGGTTCAGATGTTGGAAGGAAGAGAAAACTTAACCATGCCTCCAAATCCTTTTGCCTCTCAGGGTCCAGCAGGAACAAATACAAGTACACCTTCAAGAAATTTAAATCGCCAACTAGAAGTAATTCCCGAGTTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

266

Amino Acids

29.75

Weight (kDa)

5.91

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 225	9.7e-34	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 223	7e-36	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06560
malus_domestica	MD02G1242900.v1.1 MD07G1073800.v1.1
prunus_persica	Prupe.2G091700_v2.0.a1
pyrus_communis	pycom02g20960
rosa_chinensis	RchiOBHm_Chr1g0334411 RchiOBHm_Chr1g0335091
rosa_laevigata	RLG00000029393 RLG00000029397 RLG00000029398
rosa_multiflora	Rmu_co8496191.1_g000001 Rmu_sc0002714.1_g000004 Rmu_ssc0000047.1_g000022
rosa_roxburghii	Rroxscaffold_4G00316160 Rroxscaffold_4G00316200 Rroxscaffold_4G00316870
rosa_rugosa	Rorug01G0119000 Rorug01G0119100 Rorug01G0119200
rosa_samantha	Rh1AG138600 Rh1AG141800 Rh1BG110300 Rh1BG111200 Rh1CG130600 Rh1CG133700 Rh1DG142900 Rh1DG146600 Rh1DG148100
rosa_wichuraiana	Rw0G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	630
AciI	CCGC	1 cut(s)	345
AclWI	GGATC	4 cut(s)	217, 230, 327, 527
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	501, 760
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	3 cut(s)	365, 441, 748
AgsI	TTSAA	5 cut(s)	194, 274, 480, 626, 756
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	2 cut(s)	68, 429
AluI	AGCT	2 cut(s)	68, 429
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	589, 617
AlwI	GGATC	4 cut(s)	217, 230, 327, 527
Ama87I	CYCGRG	1 cut(s)	788
AoxI	GGCC	1 cut(s)	300
ApoI	RAATTY	2 cut(s)	501, 760
Asp700I	GAANNNNTTC	1 cut(s)	783
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	725
AvaI	CYCGRG	1 cut(s)	788
AvaII	GGWCC	1 cut(s)	725
BaeI	ACNNNNGTAYC	2 cut(s)	538, 571
BalI	TGGCCA	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	630
BanII	GRGCYC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	589, 617
BfaI	CTAG	4 cut(s)	161, 260, 533, 776
BfmI	CTRYAG	2 cut(s)	424, 636
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	725
BmeT110I	CYCGRG	1 cut(s)	788
BmgT120I	GGNCC	1 cut(s)	725
BmiI	GGNNCC	3 cut(s)	224, 632, 726
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	200, 568
BpmI	CTGGAG	1 cut(s)	370
BpuEI	CTTGAG	1 cut(s)	467
BsaAI	YACGTR	1 cut(s)	554
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	4 cut(s)	142, 205, 315, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	685, 715
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	4 cut(s)	142, 205, 315, 348
BseGI	GGATG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	734
BsgI	GTGCAG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	302
BshNI	GGYRCC	1 cut(s)	630
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	788
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	2 cut(s)	589, 617
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	621
BsnI	GGCC	1 cut(s)	302
Bso31I	GGTCTC	1 cut(s)	617
BsoBI	CYCGRG	1 cut(s)	788
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	222, 319, 519, 640
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	1 cut(s)	733
BspLI	GGNNCC	3 cut(s)	224, 632, 726
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	4 cut(s)	217, 230, 327, 527
BspT107I	GGYRCC	1 cut(s)	630
BspTNI	GGTCTC	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	366
BssECI	CCNNGG	4 cut(s)	142, 205, 315, 348
BssMI	GATC	4 cut(s)	222, 319, 519, 640
BssT1I	CCWWGG	3 cut(s)	142, 205, 315
Bst2UI	CCWGG	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	676
BstBAI	YACGTR	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	720
BstF5I	GGATG	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	4 cut(s)	225, 322, 522, 643
BstMAI	GTCTC	2 cut(s)	589, 617
BstMBI	GATC	4 cut(s)	222, 319, 519, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	587
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	2 cut(s)	424, 636
BstSNI	TACGTA	1 cut(s)	554
BstX2I	RGATCY	2 cut(s)	222, 519
BstYI	RGATCY	2 cut(s)	222, 519
BsuRI	GGCC	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	215
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	725
Csp6I	GTAC	3 cut(s)	364, 440, 747
CviAII	CATG	2 cut(s)	17, 697
CviJI	RGCY	3 cut(s)	68, 302, 429
CviKI_1	RGCY	3 cut(s)	68, 302, 429
CviQI	GTAC	3 cut(s)	364, 440, 747
DdeI	CTNAG	1 cut(s)	720
DpnI	GATC	4 cut(s)	224, 321, 521, 642
DpnII	GATC	4 cut(s)	222, 319, 519, 640
DraI	TTTAAA	1 cut(s)	765
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	676
EarI	CTCTTC	1 cut(s)	676
Ecl136II	GAGCTC	1 cut(s)	68
Eco105I	TACGTA	1 cut(s)	554
Eco130I	CCWWGG	3 cut(s)	142, 205, 315
Eco24I	GRGCYC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	617
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	725
Eco53kI	GAGCTC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	788
EcoICRI	GAGCTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	347
EcoRV	GATATC	1 cut(s)	238
EcoT14I	CCWWGG	3 cut(s)	142, 205, 315
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	3 cut(s)	142, 205, 315
FaeI	CATG	2 cut(s)	20, 700
FalI	AAGNNNNNCTT	2 cut(s)	736, 768
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	16, 696
FokI	GGATG	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	70
FspBI	CTAG	4 cut(s)	161, 260, 533, 776
FspI	TGCGCA	1 cut(s)	49
GlaI	GCGC	1 cut(s)	49
GsuI	CTGGAG	1 cut(s)	370
HaeIII	GGCC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	20, 700
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	42
Hpy166II	GTNNAC	2 cut(s)	98, 749
Hpy188I	TCNGA	3 cut(s)	289, 418, 669
Hpy188III	TCNNGA	4 cut(s)	387, 533, 756, 788
Hpy8I	GTNNAC	2 cut(s)	98, 749
HpyAV	CCTTC	4 cut(s)	566, 657, 671, 762
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	7 cut(s)	202, 213, 371, 590, 621, 638, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	587
HpyF3I	CTNAG	1 cut(s)	720
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	2 cut(s)	20, 700
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	4 cut(s)	222, 319, 519, 640
LweI	GCATC	2 cut(s)	200, 568
MaeI	CTAG	4 cut(s)	161, 260, 533, 776
MaeII	ACGT	1 cut(s)	553
MalI	GATC	4 cut(s)	224, 321, 521, 642
MboI	GATC	4 cut(s)	222, 319, 519, 640
MboII	GAAGA	4 cut(s)	521, 548, 581, 693
MflI	RGATCY	2 cut(s)	222, 519
MhlI	GDGCHC	1 cut(s)	70
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	6 cut(s)	133, 189, 501, 585, 760, 783
MluNI	TGGCCA	1 cut(s)	302
MmeI	TCCRAC	3 cut(s)	19, 128, 654
MnlI	CCTC	3 cut(s)	452, 711, 727
Mox20I	TGGCCA	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	783
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	2 cut(s)	692, 764
MslI	CAYNNNNRTG	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	1 cut(s)	587
NdeII	GATC	4 cut(s)	222, 319, 519, 640
NlaIII	CATG	2 cut(s)	20, 700
NlaIV	GGNNCC	3 cut(s)	224, 632, 726
NsbI	TGCGCA	1 cut(s)	49
PctI	GAATGC	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	1 cut(s)	42
Ppu21I	YACGTR	1 cut(s)	554
Psp124BI	GAGCTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	3 cut(s)	224, 632, 726
PspPI	GGNCC	1 cut(s)	725
PstI	CTGCAG	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	222, 519
RsaI	GTAC	3 cut(s)	365, 441, 748
RsaNI	GTAC	3 cut(s)	364, 440, 747
RseI	CAYNNNNRTG	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	70
SaqAI	TTAA	2 cut(s)	692, 764
Sau3AI	GATC	4 cut(s)	222, 319, 519, 640
Sau96I	GGNCC	1 cut(s)	725
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	8 cut(s)	70, 91, 376, 431, 552, 556, 613, 754
SfaNI	GCATC	2 cut(s)	200, 568
SfcI	CTRYAG	2 cut(s)	424, 636
SinI	GGWCC	1 cut(s)	725
SmiI	ATTTAAAT	1 cut(s)	765
SmiMI	CAYNNNNRTG	1 cut(s)	21
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SnaBI	TACGTA	1 cut(s)	554
Sse9I	AATT	6 cut(s)	133, 189, 501, 585, 760, 783
SsiI	CCGC	1 cut(s)	345
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	4 cut(s)	161, 260, 533, 776
SstI	GAGCTC	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	347
StyI	CCWWGG	3 cut(s)	142, 205, 315
SwaI	ATTTAAAT	1 cut(s)	765
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	1 cut(s)	31
TasI	AATT	6 cut(s)	133, 189, 501, 585, 760, 783
TatI	WGTACW	1 cut(s)	746
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	2 cut(s)	692, 764
Tru9I	TTAA	2 cut(s)	692, 764
TspDTI	ATGAA	3 cut(s)	100, 105, 513
TspGWI	ACGGA	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	725
XapI	RAATTY	2 cut(s)	501, 760
XbaI	TCTAGA	1 cut(s)	532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	4 cut(s)	161, 260, 533, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.