Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005541

Physical Location & Seq

Genomic Coordinates Reverse (-)

28738015 .. 28758840

Gene Structure 20826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG130600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGTCAGGAGAGCACCAAAGCGTCCACTAAGGGTTGTTGACATACCCGTTGTGACCCCGATGAGTCTTGGACTAGTGAAGTATGCAGGCCAAGCCTGGTGTGACTTATCATCCTTGAGGTGGGTCAGTTCAGGAGCTGCACCATTGAGCAAAGAAGTGGCTGATGAGTTCAGACTGAAGTTTCCTTGGGTTGAGTTGAGGCCGGGGTATGGCCTAACTGCTTTGGGACCTTATAAGGAAGGAGAGTTGTGGCTGAAGAGTCCAATTATAATGAAAGAGTATCTGGGGAATGTGGTAGCAACCATTGCTAGTTGCTCCTGCAGAATTGGAAGCAATTCTCTTGAGCCATCTCAAATTCTTGATGCTGCTGTCGTACCGGTTGAAGATGAAGTAGGACAAATACCAATGGCATATGTGGTGAGAGCAGCTAGTACTGAACTGATCACTGAAGACCAAGTGGCCCCCTACAAAAAAGTCAGTAAAGTAGGGTTTATATCTGCCATTCCAAGATCAGCTGCAAGCAAAATCTTGAGGAAGGAACTTATTGTTGGATTTACTTCAAGTTCTCCCCTCAGGTCAATATCTTCAAAAAATGAGAGTACTGCTGAGTCTCTTCTAACTAATACTGTGCCTCCGGTTTCAACTAGTTCCAATGTTCCATCTCATTCTGAAAGGTCTCAGATTACTAGATCTGCTTCAGGTTCTCCCCTCAGGGATGCTACTACTGGTTACACAGAGCACTTAACCACCATTTCCTCTACTCTCGCTACCATTCTCATCACCATTCCTCTATTGTCACTGAGCCAATTACTTGTAGTTACGTTACAGCATGCTGAGTATTGGAGGCTCACCAAATCATTAAATGCTAAAGGGGGTAAGGGCCGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

296

Amino Acids

31.99

Weight (kDa)

9.55

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06560
malus_domestica	MD02G1242900.v1.1 MD07G1073800.v1.1
prunus_persica	Prupe.2G091700_v2.0.a1
pyrus_communis	pycom02g20960
rosa_chinensis	RchiOBHm_Chr1g0334411 RchiOBHm_Chr1g0335091
rosa_laevigata	RLG00000029393 RLG00000029397 RLG00000029398
rosa_multiflora	Rmu_co8496191.1_g000001 Rmu_sc0002714.1_g000004 Rmu_ssc0000047.1_g000022
rosa_roxburghii	Rroxscaffold_4G00316160 Rroxscaffold_4G00316200 Rroxscaffold_4G00316870
rosa_rugosa	Rorug01G0119000 Rorug01G0119100 Rorug01G0119200
rosa_samantha	Rh1AG138600 Rh1AG141800 Rh1BG110300 Rh1BG111200 Rh1CG130600 Rh1CG133700 Rh1DG142900 Rh1DG146600 Rh1DG148100
rosa_wichuraiana	Rw0G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	234, 269
AcsI	RAATTY	1 cut(s)	354
AcuI	CTGAAG	4 cut(s)	197, 275, 468, 681
AfaI	GTAC	3 cut(s)	375, 433, 601
AfiI	CCNNNNNNNGG	2 cut(s)	120, 209
AgeI	ACCGGT	1 cut(s)	376
AgsI	TTSAA	4 cut(s)	383, 561, 588, 642
AhlI	ACTAGT	2 cut(s)	73, 644
AjnI	CCWGG	1 cut(s)	95
AjuI	GAANNNNNNNTTGG	2 cut(s)	531, 563
AluBI	AGCT	3 cut(s)	137, 428, 515
AluI	AGCT	3 cut(s)	137, 428, 515
Alw21I	GWGCWC	2 cut(s)	16, 741
Alw26I	GTCTC	2 cut(s)	615, 681
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	5 cut(s)	88, 200, 211, 459, 880
ApeKI	GCWGC	4 cut(s)	137, 365, 425, 515
ApoI	RAATTY	1 cut(s)	354
AsiGI	ACCGGT	1 cut(s)	376
Asp700I	GAANNNNTTC	1 cut(s)	334
AspS9I	GGNCC	3 cut(s)	227, 460, 880
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	3 cut(s)	430, 772, 841
AvaII	GGWCC	1 cut(s)	227
AxyI	CCTNAGG	2 cut(s)	572, 710
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	2 cut(s)	16, 741
BbvI	GCAGC	4 cut(s)	124, 352, 437, 502
BccI	CCATC	2 cut(s)	355, 667
BceAI	ACGGC	1 cut(s)	867
BciT130I	CCWGG	1 cut(s)	97
BclI	TGATCA	1 cut(s)	441
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	615, 681
BcuI	ACTAGT	2 cut(s)	73, 644
BfaI	CTAG	5 cut(s)	74, 309, 429, 645, 687
BfmI	CTRYAG	1 cut(s)	319
BglII	AGATCT	1 cut(s)	689
BisI	GCNGC	4 cut(s)	138, 366, 426, 516
BlsI	GCNGC	4 cut(s)	139, 367, 427, 517
BmcAI	AGTACT	2 cut(s)	433, 601
Bme1390I	CCNGG	2 cut(s)	97, 204
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	3 cut(s)	227, 460, 880
BmiI	GGNNCC	2 cut(s)	228, 462
BmrFI	CCNGG	2 cut(s)	97, 204
BmsI	GCATC	2 cut(s)	352, 706
BpiI	GAAGAC	1 cut(s)	456
BpuEI	CTTGAG	3 cut(s)	136, 362, 550
BpuMI	CCSGG	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	681
BsaJI	CCNNGG	2 cut(s)	185, 203
BsaWI	WCCGGW	2 cut(s)	376, 634
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 209
Bse118I	RCCGGY	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	730
Bse21I	CCTNAGG	2 cut(s)	572, 710
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	185, 203
BseGI	GGATG	2 cut(s)	110, 721
BseLI	CCNNNNNNNGG	2 cut(s)	120, 209
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	6 cut(s)	586, 597, 692, 724, 791, 825
BseNI	ACTGG	1 cut(s)	730
BseXI	GCAGC	4 cut(s)	124, 352, 437, 502
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	5 cut(s)	90, 202, 213, 461, 882
BshTI	ACCGGT	1 cut(s)	376
BsiHKAI	GWGCWC	2 cut(s)	16, 741
BsiSI	CCGG	3 cut(s)	203, 377, 635
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	120, 209
BsmAI	GTCTC	2 cut(s)	615, 681
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	5 cut(s)	90, 202, 213, 461, 882
Bso31I	GGTCTC	1 cut(s)	681
Bsp1286I	GDGCHC	2 cut(s)	16, 741
Bsp143I	GATC	3 cut(s)	441, 509, 689
BspANI	GGCC	5 cut(s)	90, 202, 213, 461, 882
BspCNI	CTCAG	6 cut(s)	585, 598, 691, 723, 792, 826
BspLI	GGNNCC	2 cut(s)	228, 462
BspMAI	CTGCAG	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	681
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	730
BssAI	RCCGGY	1 cut(s)	376
BssECI	CCNNGG	2 cut(s)	185, 203
BssMI	GATC	3 cut(s)	441, 509, 689
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	628
Bst6I	CTCTTC	2 cut(s)	251, 618
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstC8I	GCNNGC	3 cut(s)	88, 520, 831
BstDEI	CTNAG	7 cut(s)	29, 572, 606, 678, 710, 800, 834
BstF5I	GGATG	2 cut(s)	110, 721
BstKTI	GATC	3 cut(s)	444, 512, 692
BstMAI	GTCTC	2 cut(s)	615, 681
BstMBI	GATC	3 cut(s)	441, 509, 689
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 305
BstNI	CCWGG	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	833
BstSCI	CCNGG	2 cut(s)	95, 202
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	4 cut(s)	124, 352, 437, 502
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
Bsu36I	CCTNAGG	2 cut(s)	572, 710
BsuRI	GGCC	5 cut(s)	90, 202, 213, 461, 882
BtsCI	GGATG	2 cut(s)	110, 721
BtsIMutI	CAGTG	2 cut(s)	444, 797
Cac8I	GCNNGC	3 cut(s)	88, 520, 831
CaiI	CAGNNNCTG	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	376
Cfr13I	GGNCC	3 cut(s)	227, 460, 880
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	3 cut(s)	374, 432, 600
CspAI	ACCGGT	1 cut(s)	376
CviAII	CATG	1 cut(s)	830
CviQI	GTAC	3 cut(s)	374, 432, 600
DdeI	CTNAG	7 cut(s)	29, 572, 606, 678, 710, 800, 834
DpnI	GATC	3 cut(s)	443, 511, 691
DpnII	GATC	3 cut(s)	441, 509, 689
Eam1104I	CTCTTC	2 cut(s)	251, 618
EarI	CTCTTC	2 cut(s)	251, 618
Eco130I	CCWWGG	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	4 cut(s)	197, 275, 468, 681
Eco81I	CCTNAGG	2 cut(s)	572, 710
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	1 cut(s)	833
FaiI	YATR	9 cut(s)	44, 84, 210, 234, 269, 412, 414, 494, 831
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	1 cut(s)	829
FauNDI	CATATG	1 cut(s)	412
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	4 cut(s)	138, 366, 426, 516
FokI	GGATG	2 cut(s)	97, 728
Fsp4HI	GCNGC	4 cut(s)	138, 366, 426, 516
FspBI	CTAG	5 cut(s)	74, 309, 429, 645, 687
GluI	GCNGC	4 cut(s)	138, 366, 426, 516
HaeIII	GGCC	5 cut(s)	90, 202, 213, 461, 882
HapII	CCGG	3 cut(s)	203, 377, 635
HgaI	GACGC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	833
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	64, 259, 608
HpaII	CCGG	3 cut(s)	203, 377, 635
HphI	GGTGA	3 cut(s)	430, 772, 841
Hpy166II	GTNNAC	2 cut(s)	26, 40
Hpy188I	TCNGA	3 cut(s)	173, 670, 681
Hpy188III	TCNNGA	5 cut(s)	7, 132, 341, 359, 529
Hpy8I	GTNNAC	2 cut(s)	26, 40
HpyAV	CCTTC	2 cut(s)	233, 529
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4IV	ACGT	1 cut(s)	821
HpyCH4V	TGCA	4 cut(s)	86, 140, 321, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 305
HpyF3I	CTNAG	7 cut(s)	29, 572, 606, 678, 710, 800, 834
HpySE526I	ACGT	1 cut(s)	821
Hsp92II	CATG	1 cut(s)	833
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	3 cut(s)	441, 509, 689
LmnI	GCTCC	2 cut(s)	134, 320
Lsp1109I	GCAGC	4 cut(s)	124, 352, 437, 502
LweI	GCATC	2 cut(s)	352, 706
MaeI	CTAG	5 cut(s)	74, 309, 429, 645, 687
MaeII	ACGT	1 cut(s)	821
MaeIII	GTNAC	6 cut(s)	52, 101, 728, 795, 817, 822
MalI	GATC	3 cut(s)	443, 511, 691
MboI	GATC	3 cut(s)	441, 509, 689
MboII	GAAGA	5 cut(s)	268, 395, 461, 576, 605
MflI	RGATCY	1 cut(s)	689
MhlI	GDGCHC	2 cut(s)	16, 741
MluCI	AATT	5 cut(s)	264, 324, 334, 354, 806
MlyI	GAGTC	3 cut(s)	73, 268, 617
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	9 cut(s)	111, 192, 525, 581, 642, 719, 766, 798, 837
MroXI	GAANNNNTTC	1 cut(s)	334
MseI	TTAA	2 cut(s)	743, 860
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	3 cut(s)	203, 377, 635
MspR9I	CCNGG	2 cut(s)	97, 204
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	92, 305
NciI	CCSGG	1 cut(s)	204
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	3 cut(s)	441, 509, 689
NlaIII	CATG	1 cut(s)	833
NlaIV	GGNNCC	2 cut(s)	228, 462
NmuCI	GTSAC	3 cut(s)	52, 101, 795
NspI	RCATGY	1 cut(s)	833
PaeI	GCATGC	1 cut(s)	833
PdmI	GAANNNNTTC	1 cut(s)	334
PinAI	ACCGGT	1 cut(s)	376
PkrI	GCNGC	4 cut(s)	139, 367, 427, 517
PleI	GAGTC	3 cut(s)	72, 267, 616
PpsI	GAGTC	3 cut(s)	72, 267, 616
PpuMI	RGGWCCY	1 cut(s)	227
PsiI	TTATAA	2 cut(s)	234, 269
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	228, 462
PspPI	GGNCC	3 cut(s)	227, 460, 880
PspPPI	RGGWCCY	1 cut(s)	227
PstI	CTGCAG	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	689
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	3 cut(s)	375, 433, 601
RsaNI	GTAC	3 cut(s)	374, 432, 600
SaqAI	TTAA	2 cut(s)	743, 860
SatI	GCNGC	4 cut(s)	138, 366, 426, 516
Sau3AI	GATC	3 cut(s)	441, 509, 689
Sau96I	GGNCC	3 cut(s)	227, 460, 880
ScaI	AGTACT	2 cut(s)	433, 601
SchI	GAGTC	3 cut(s)	73, 268, 617
ScrFI	CCNGG	2 cut(s)	97, 204
SduI	GDGCHC	2 cut(s)	16, 741
SetI	ASST	9 cut(s)	122, 139, 232, 430, 517, 578, 677, 703, 824
SfaNI	GCATC	2 cut(s)	352, 706
SfcI	CTRYAG	1 cut(s)	319
SinI	GGWCC	1 cut(s)	227
SmlI	CTYRAG	3 cut(s)	115, 341, 529
SmoI	CTYRAG	3 cut(s)	115, 341, 529
SpeI	ACTAGT	2 cut(s)	73, 644
SphI	GCATGC	1 cut(s)	833
Sse9I	AATT	5 cut(s)	264, 324, 334, 354, 806
SspMI	CTAG	5 cut(s)	74, 309, 429, 645, 687
StyD4I	CCNGG	2 cut(s)	95, 202
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	1 cut(s)	628
TaiI	ACGT	1 cut(s)	824
TasI	AATT	5 cut(s)	264, 324, 334, 354, 806
TatI	WGTACW	2 cut(s)	431, 599
Tru1I	TTAA	2 cut(s)	743, 860
Tru9I	TTAA	2 cut(s)	743, 860
TscAI	CASTG	2 cut(s)	451, 804
TseFI	GTSAC	3 cut(s)	52, 101, 795
TseI	GCWGC	4 cut(s)	137, 365, 425, 515
Tsp45I	GTSAC	3 cut(s)	52, 101, 795
TspDTI	ATGAA	2 cut(s)	287, 402
TspRI	CASTG	2 cut(s)	451, 804
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	1 cut(s)	833
XmnI	GAANNNNTTC	1 cut(s)	334
XspI	CTAG	5 cut(s)	74, 309, 429, 645, 687
ZrmI	AGTACT	2 cut(s)	433, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.