Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002714.1

Orthogroup ID

OG0005541

Physical Location & Seq

Genomic Coordinates Forward (+)

25956 .. 26653

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002714.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgcagaggaagagaaatgagaaaaagtgcaagaggtcaagatgtgaccatggacagagcgcttttggtatgaactgtgataaaactctgatatttttaggtcggagagcaacaaagcgtccactaagggttgttgacatacccgttgtgaccccgatgagtcttggactagtgaagtatgcaggtcaagcctggtgtgacctatcatccttgaggagggtcagttcaggagctgcaccattgagcaaagaagtggctgatgagttcagactgaagtttccttgggctttggaaccttataaggaaggagagttgtggctgaagagtccaactataatgaaagagtatctggggaatgtggtagcagccattgctagtattgatgaagatgggtggttgcaaactggtgatctttgttattttgatgagggatggactgctttacattgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

150

Amino Acids

16.97

Weight (kDa)

8.93

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06560
malus_domestica	MD02G1242900.v1.1 MD07G1073800.v1.1
prunus_persica	Prupe.2G091700_v2.0.a1
pyrus_communis	pycom02g20960
rosa_chinensis	RchiOBHm_Chr1g0334411 RchiOBHm_Chr1g0335091
rosa_laevigata	RLG00000029393 RLG00000029397 RLG00000029398
rosa_multiflora	Rmu_co8496191.1_g000001 Rmu_sc0002714.1_g000004 Rmu_ssc0000047.1_g000022
rosa_roxburghii	Rroxscaffold_4G00316160 Rroxscaffold_4G00316200 Rroxscaffold_4G00316870
rosa_rugosa	Rorug01G0119000 Rorug01G0119100 Rorug01G0119200
rosa_samantha	Rh1AG138600 Rh1AG141800 Rh1BG110300 Rh1BG111200 Rh1CG130600 Rh1CG133700 Rh1DG142900 Rh1DG146600 Rh1DG148100
rosa_wichuraiana	Rw0G013960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
Acc36I	ACCTGC	1 cut(s)	173
AcuI	CTGAAG	2 cut(s)	293, 341
AfeI	AGCGCT	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	216
AhlI	ACTAGT	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	191
AloI	GAACNNNNNNTCC	2 cut(s)	208, 240
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
AlwNI	CAGNNNCTG	1 cut(s)	233
Aor51HI	AGCGCT	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	233, 365
AspLEI	GCGC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	220, 377
BccI	CCATC	2 cut(s)	383, 426
BciT130I	CCWGG	1 cut(s)	193
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	2 cut(s)	170, 375
BfoI	RGCGCY	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	173
BisI	GCNGC	2 cut(s)	234, 366
BlsI	GCNGC	2 cut(s)	235, 367
Bme1390I	CCNGG	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	49, 281
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	409
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	49, 281
BseGI	GGATG	2 cut(s)	206, 437
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	220, 377
BsgI	GTGCAG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	409
Bsp19I	CCATGG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	2 cut(s)	49, 281
BssMI	GATC	1 cut(s)	409
BssT1I	CCWWGG	2 cut(s)	49, 281
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	2 cut(s)	5, 317
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	49
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	206, 437
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	412
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 371
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	220, 377
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	206, 437
BveI	ACCTGC	1 cut(s)	173
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	62
CseI	GACGC	1 cut(s)	107
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	6 cut(s)	191, 233, 257, 287, 319, 368
CviKI_1	RGCY	6 cut(s)	191, 233, 257, 287, 319, 368
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
Eam1104I	CTCTTC	2 cut(s)	5, 317
EarI	CTCTTC	2 cut(s)	5, 317
Eco130I	CCWWGG	2 cut(s)	49, 281
Eco47III	AGCGCT	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	293, 341
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	2 cut(s)	49, 281
ErhI	CCWWGG	2 cut(s)	49, 281
FaeI	CATG	1 cut(s)	53
FaiI	YATR	6 cut(s)	51, 71, 140, 180, 300, 335
FatI	CATG	1 cut(s)	49
Fnu4HI	GCNGC	2 cut(s)	234, 366
FokI	GGATG	2 cut(s)	193, 444
Fsp4HI	GCNGC	2 cut(s)	234, 366
FspBI	CTAG	2 cut(s)	170, 375
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	2 cut(s)	234, 366
HaeII	RGCGCY	1 cut(s)	63
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	53
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	2 cut(s)	160, 325
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	2 cut(s)	122, 136
Hpy188I	TCNGA	3 cut(s)	90, 105, 269
Hpy188III	TCNNGA	2 cut(s)	39, 228
Hpy8I	GTNNAC	2 cut(s)	122, 136
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	5 cut(s)	4, 30, 182, 236, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 371
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	53
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	6 cut(s)	168, 178, 205, 213, 335, 390
Lsp1109I	GCAGC	2 cut(s)	220, 377
MaeI	CTAG	2 cut(s)	170, 375
MaeIII	GTNAC	3 cut(s)	44, 148, 197
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	3 cut(s)	22, 334, 398
MlyI	GAGTC	2 cut(s)	169, 334
MmeI	TCCRAC	2 cut(s)	83, 353
MnlI	CCTC	4 cut(s)	27, 207, 210, 421
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	188, 371
NcoI	CCATGG	1 cut(s)	49
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	3 cut(s)	44, 148, 197
PkrI	GCNGC	2 cut(s)	235, 367
PleI	GAGTC	2 cut(s)	168, 333
PpsI	GAGTC	2 cut(s)	168, 333
PsiI	TTATAA	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	294
PstNI	CAGNNNCTG	1 cut(s)	233
SatI	GCNGC	2 cut(s)	234, 366
Sau3AI	GATC	1 cut(s)	409
SchI	GAGTC	2 cut(s)	169, 334
ScrFI	CCNGG	1 cut(s)	193
SetI	ASST	6 cut(s)	38, 103, 187, 204, 235, 298
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SpeI	ACTAGT	1 cut(s)	169
SspMI	CTAG	2 cut(s)	170, 375
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	2 cut(s)	49, 281
TaaI	ACNGT	1 cut(s)	77
TseFI	GTSAC	3 cut(s)	44, 148, 197
TseI	GCWGC	2 cut(s)	233, 365
Tsp45I	GTSAC	3 cut(s)	44, 148, 197
TspDTI	ATGAA	3 cut(s)	86, 353, 399
XagI	CCTNNNNNAGG	1 cut(s)	214
XspI	CTAG	2 cut(s)	170, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.