Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011628

Physical Location & Seq

Genomic Coordinates Reverse (-)

60224793 .. 60227312

Gene Structure 2520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030373

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAGATAGTGAGGTACCAGGAGCGGGGTAATTATGATGACAATCTCGGCCGTAATTATGATGACAATCCCAGAGAGTTTGCAGGTGTGGCTGGGCTCGTGGTGCCGGGAGTGACCCGGATACTGGTCATGGTGTTGTTGGTGCCAGAAACTAATGGCACCGGTGACTGGGATCGTGATGACTTGCTCAGACGGGTCTGTAGGTGGATCCGGGGTGAGCCTCTAGTACCCGTACCGAGCGTTGAAGACCGGTACGCATGCGGTCCAGGAATTCGAGTGCCACCAAGATGCTTGGTGAGTTGCCAAGTTGGGGCGGGTTGCCTAGTGCATGGTAAGGAGTTTTCTGGGGAGACATGGGTGTCTGAAGAGGATCAGCCTGGCAGAGATGTGGTGTGCCAGACTTGCTACCCGGTGGCTGAACTTAATAGCTGGAACATGTACTCAAGCTTAAATAAGAGCCATAGAACACTTCCTTCTACTTCTAGAAATGATATGACGCTGAGTTCTGCAATGGCGATAGAGTTGCCAATCTTCTTGAATGATAAAAGGTTGCTATCCACACAAGTACAAGCACCTGCCCAAGCAAGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

198

Amino Acids

22.01

Weight (kDa)

5.27

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011628)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030373
rosa_multiflora	Rmu_sc0003880.1_g000025 Rmu_sc0006948.1_g000011 Rmu_sc0032105.1_g000001
rosa_rugosa	Rorug01G0189900 Rorug01G0190000 Rorug01G0190100 Rorug06G0061300 Rorug06G0061400
rosa_samantha	Rh1AG125400 Rh3BG351200 Rh3CG055900 Rh5AG334200 Rh5BG132800 Rh5DG508200 Rh6AG163600 Rh6BG167400 Rh6CG161200 Rh6DG152800 Rh6DG154100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	74, 583
AasI	GACNNNNNNGTC	1 cut(s)	358
Acc36I	ACCTGC	2 cut(s)	74, 583
Acc65I	GGTACC	1 cut(s)	15
AccB1I	GGYRCC	4 cut(s)	15, 103, 142, 158
AccBSI	CCGCTC	1 cut(s)	25
AciI	CCGC	3 cut(s)	25, 261, 314
AclWI	GGATC	4 cut(s)	180, 202, 215, 378
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	6 cut(s)	17, 228, 234, 254, 440, 567
AfiI	CCNNNNNNNGG	5 cut(s)	25, 124, 168, 310, 585
AflIII	ACRYGT	1 cut(s)	435
AgeI	ACCGGT	2 cut(s)	161, 249
AgsI	TTSAA	2 cut(s)	245, 538
AjnI	CCWGG	3 cut(s)	18, 265, 376
AluBI	AGCT	2 cut(s)	429, 447
AluI	AGCT	2 cut(s)	429, 447
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	4 cut(s)	180, 202, 215, 378
AoxI	GGCC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	270
AsiGI	ACCGGT	2 cut(s)	161, 249
Asp718I	GGTACC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	4 cut(s)	108, 118, 212, 410
AsuHPI	GGTGA	3 cut(s)	176, 227, 307
AvaII	GGWCC	1 cut(s)	263
BamHI	GGATCC	1 cut(s)	207
BanI	GGYRCC	4 cut(s)	15, 103, 142, 158
BanII	GRGCYC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	252
BceAI	ACGGC	1 cut(s)	36
BcgI	CGANNNNNNTGC	2 cut(s)	505, 539
BciT130I	CCWGG	3 cut(s)	20, 267, 378
BciVI	GTATCC	1 cut(s)	114
BcnI	CCSGG	4 cut(s)	108, 118, 212, 410
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	3 cut(s)	224, 323, 483
BfmI	CTRYAG	1 cut(s)	199
BfuAI	ACCTGC	2 cut(s)	74, 583
BfuI	GTATCC	1 cut(s)	114
Bme1390I	CCNGG	7 cut(s)	20, 108, 118, 212, 267, 378, 410
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	5 cut(s)	17, 105, 144, 160, 209
BmrFI	CCNGG	7 cut(s)	20, 108, 118, 212, 267, 378, 410
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	1 cut(s)	278
BmuI	ACTGGG	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	427
BpuMI	CCSGG	4 cut(s)	108, 118, 212, 410
BsaBI	GATNNNNATC	2 cut(s)	42, 66
BsaJI	CCNNGG	1 cut(s)	211
BsaWI	WCCGGW	2 cut(s)	161, 249
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 124, 168, 310, 585
Bse118I	RCCGGY	2 cut(s)	161, 249
Bse1I	ACTGG	2 cut(s)	129, 173
Bse3DI	GCAATG	1 cut(s)	516
Bse8I	GATNNNNATC	2 cut(s)	42, 66
BseBI	CCWGG	3 cut(s)	20, 267, 378
BseDI	CCNNGG	1 cut(s)	211
BseJI	GATNNNNATC	2 cut(s)	42, 66
BseLI	CCNNNNNNNGG	5 cut(s)	25, 124, 168, 310, 585
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	2 cut(s)	202, 491
BseNI	ACTGG	2 cut(s)	129, 173
BseX3I	CGGCCG	1 cut(s)	49
BseYI	CCCAGC	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	4 cut(s)	15, 103, 142, 158
BshTI	ACCGGT	2 cut(s)	161, 249
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	6 cut(s)	107, 118, 162, 211, 250, 410
BslI	CCNNNNNNNGG	5 cut(s)	25, 124, 168, 310, 585
BsmAI	GTCTC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	172, 207, 370
BspACI	CCGC	3 cut(s)	25, 261, 314
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	2 cut(s)	201, 492
BspLI	GGNNCC	5 cut(s)	17, 105, 144, 160, 209
BspMI	ACCTGC	2 cut(s)	74, 583
BspPI	GGATC	4 cut(s)	180, 202, 215, 378
BspT107I	GGYRCC	4 cut(s)	15, 103, 142, 158
BsrBI	CCGCTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	2 cut(s)	161, 249
BsrI	ACTGG	2 cut(s)	129, 173
BssAI	RCCGGY	2 cut(s)	161, 249
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	3 cut(s)	172, 207, 370
BssSI	CACGAG	1 cut(s)	98
Bst2BI	CACGAG	1 cut(s)	98
Bst2UI	CCWGG	3 cut(s)	20, 267, 378
Bst6I	CTCTTC	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	188, 500
BstKTI	GATC	3 cut(s)	175, 210, 373
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	3 cut(s)	172, 207, 370
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 103, 402
BstNI	CCWGG	3 cut(s)	20, 267, 378
BstNSI	RCATGY	2 cut(s)	261, 439
BstSCI	CCNGG	7 cut(s)	18, 106, 116, 210, 265, 376, 408
BstSFI	CTRYAG	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BstZI	CGGCCG	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	51
BveI	ACCTGC	2 cut(s)	74, 583
Cac8I	GCNNGC	1 cut(s)	259
Cfr10I	RCCGGY	2 cut(s)	161, 249
Cfr13I	GGNCC	1 cut(s)	263
CseI	GACGC	1 cut(s)	505
Csp6I	GTAC	6 cut(s)	16, 227, 233, 253, 439, 566
CspAI	ACCGGT	2 cut(s)	161, 249
CviAII	CATG	5 cut(s)	130, 258, 329, 354, 436
CviJI	RGCY	9 cut(s)	51, 92, 97, 220, 376, 416, 429, 447, 459
CviKI_1	RGCY	9 cut(s)	51, 92, 97, 220, 376, 416, 429, 447, 459
CviQI	GTAC	6 cut(s)	16, 227, 233, 253, 439, 566
DdeI	CTNAG	2 cut(s)	188, 500
DpnI	GATC	3 cut(s)	174, 209, 372
DpnII	GATC	3 cut(s)	172, 207, 370
DrdI	GACNNNNNNGTC	1 cut(s)	358
DseDI	GACNNNNNNGTC	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	49
EagI	CGGCCG	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EclXI	CGGCCG	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	263
Eco52I	CGGCCG	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	384
EcoRI	GAATTC	1 cut(s)	270
EcoRII	CCWGG	3 cut(s)	18, 265, 376
EcoT38I	GRGCYC	1 cut(s)	99
FaeI	CATG	5 cut(s)	133, 261, 332, 357, 439
FaiI	YATR	9 cut(s)	36, 60, 131, 259, 330, 355, 437, 462, 494
FatI	CATG	5 cut(s)	129, 257, 328, 353, 435
FauI	CCCGC	2 cut(s)	18, 307
FriOI	GRGCYC	1 cut(s)	99
FspBI	CTAG	3 cut(s)	224, 323, 483
GsaI	CCCAGC	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	6 cut(s)	107, 118, 162, 211, 250, 410
HgaI	GACGC	1 cut(s)	505
Hin1II	CATG	5 cut(s)	133, 261, 332, 357, 439
HindIII	AAGCTT	1 cut(s)	445
HpaII	CCGG	6 cut(s)	107, 118, 162, 211, 250, 410
HphI	GGTGA	3 cut(s)	176, 227, 307
Hpy188I	TCNGA	2 cut(s)	191, 364
Hpy188III	TCNNGA	3 cut(s)	176, 483, 535
HpyAV	CCTTC	1 cut(s)	483
HpyCH4V	TGCA	3 cut(s)	83, 328, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 103, 402
HpyF3I	CTNAG	2 cut(s)	188, 500
Hsp92II	CATG	5 cut(s)	133, 261, 332, 357, 439
KpnI	GGTACC	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	172, 207, 370
LmnI	GCTCC	1 cut(s)	22
LweI	GCATC	1 cut(s)	278
MaeI	CTAG	3 cut(s)	224, 323, 483
MaeIII	GTNAC	2 cut(s)	112, 164
MalI	GATC	3 cut(s)	174, 209, 372
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	3 cut(s)	172, 207, 370
MboII	GAAGA	3 cut(s)	257, 377, 523
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	3 cut(s)	31, 55, 270
MnlI	CCTC	3 cut(s)	6, 231, 361
MseI	TTAA	2 cut(s)	423, 449
MslI	CAYNNNNRTG	1 cut(s)	286
MspI	CCGG	6 cut(s)	107, 118, 162, 211, 250, 410
MspR9I	CCNGG	7 cut(s)	20, 108, 118, 212, 267, 378, 410
MvaI	CCWGG	3 cut(s)	20, 267, 378
MwoI	GCNNNNNNNGC	3 cut(s)	89, 103, 402
NciI	CCSGG	4 cut(s)	108, 118, 212, 410
NdeII	GATC	3 cut(s)	172, 207, 370
NlaIII	CATG	5 cut(s)	133, 261, 332, 357, 439
NlaIV	GGNNCC	5 cut(s)	17, 105, 144, 160, 209
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	112, 164
NspI	RCATGY	2 cut(s)	261, 439
PaeI	GCATGC	1 cut(s)	261
PaqCI	CACCTGC	2 cut(s)	74, 583
PciI	ACATGT	1 cut(s)	435
PfoI	TCCNGGA	1 cut(s)	265
PinAI	ACCGGT	2 cut(s)	161, 249
PscI	ACATGT	1 cut(s)	435
Psp6I	CCWGG	3 cut(s)	18, 265, 376
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	3 cut(s)	18, 265, 376
PspN4I	GGNNCC	5 cut(s)	17, 105, 144, 160, 209
PspPI	GGNCC	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	6 cut(s)	17, 228, 234, 254, 440, 567
RsaNI	GTAC	6 cut(s)	16, 227, 233, 253, 439, 566
RseI	CAYNNNNRTG	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	423, 449
Sau3AI	GATC	3 cut(s)	172, 207, 370
Sau96I	GGNCC	1 cut(s)	263
ScrFI	CCNGG	7 cut(s)	20, 108, 118, 212, 267, 378, 410
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	7 cut(s)	17, 88, 206, 431, 449, 551, 577
SfaNI	GCATC	1 cut(s)	278
SfcI	CTRYAG	1 cut(s)	199
SgrAI	CRCCGGYG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	286
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
SphI	GCATGC	1 cut(s)	261
Sse9I	AATT	3 cut(s)	31, 55, 270
SsiI	CCGC	3 cut(s)	25, 261, 314
SspMI	CTAG	3 cut(s)	224, 323, 483
StyD4I	CCNGG	7 cut(s)	18, 106, 116, 210, 265, 376, 408
TaqI	TCGA	1 cut(s)	274
TasI	AATT	3 cut(s)	31, 55, 270
TatI	WGTACW	2 cut(s)	438, 565
Tru1I	TTAA	2 cut(s)	423, 449
Tru9I	TTAA	2 cut(s)	423, 449
TseFI	GTSAC	2 cut(s)	112, 164
Tsp45I	GTSAC	2 cut(s)	112, 164
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	270
XbaI	TCTAGA	1 cut(s)	482
XceI	RCATGY	2 cut(s)	261, 439
XspI	CTAG	3 cut(s)	224, 323, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.