Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011628

Physical Location & Seq

Genomic Coordinates Reverse (-)

26251803 .. 26253896

Gene Structure 2094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0189900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGAATCTTTGCTATGCACCTGGTATTGAAGGAAAAGAAAGCCCTGTTGAGATATTTTCCTAGCGTATGTTTGGGTTCTGTTGTTTTCATTTCTCTCAAGGAAGTGGTTCTTTTGATATGGCAACTCTTAAGGAATCTGAAAATCAAGACTGGCACTTGTAAACGCCTCGTTAAGGAGTTTCATTCTTATGAGAAAGAGGTTGAGAGAGAGGCTGCGAAAACAGCAGACATGAAGGGGAAAGGAGCTGATCCTTATGACCTCAAGCAACAGGAAAATGTGCTTGCTGAATCAAGGATGATGATTCCCGATTGTCAAAAGCGCCTGGAGGCCTCACTAGCTGACTCTCTTCCCCAGTTTGTTAAGCAATGCATTTATGTTCAGGCTGAGTTGGAAGAAGAGTTGAACCAGAAGGAAGGCCCTGAAATTGAAGAAGCTCGGACCATTATTGCAGAAGTTGATAAGTTGTTCCAGACAACGGAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0007275 GO:0007548 GO:0008150 GO:0008406 GO:0008585 GO:0012505 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048513 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M28

Protein Analysis

162

Amino Acids

18.56

Weight (kDa)

5.83

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBCA	PF02970	44 - 124	1.8e-26	Tubulin binding cofactor A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0011628)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030373
rosa_multiflora	Rmu_sc0003880.1_g000025 Rmu_sc0006948.1_g000011 Rmu_sc0032105.1_g000001
rosa_rugosa	Rorug01G0189900 Rorug01G0190000 Rorug01G0190100 Rorug06G0061300 Rorug06G0061400
rosa_samantha	Rh1AG125400 Rh3BG351200 Rh3CG055900 Rh5AG334200 Rh5BG132800 Rh5DG508200 Rh6AG163600 Rh6BG167400 Rh6CG161200 Rh6DG152800 Rh6DG154100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	175, 478
AflII	CTTAAG	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	31, 406, 431
AjnI	CCWGG	2 cut(s)	21, 324
AluBI	AGCT	3 cut(s)	248, 341, 437
AluI	AGCT	3 cut(s)	248, 341, 437
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	2 cut(s)	330, 418
ApeKI	GCWGC	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	419, 441
AvaII	GGWCC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	202
BciT130I	CCWGG	2 cut(s)	23, 326
BfaI	CTAG	3 cut(s)	63, 338, 487
BfoI	RGCGCY	1 cut(s)	325
BfrI	CTTAAG	1 cut(s)	130
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	2 cut(s)	23, 326
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	2 cut(s)	419, 441
BmrFI	CCNGG	2 cut(s)	23, 326
BmrI	ACTGGG	1 cut(s)	349
BmuI	ACTGGG	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	347
BpuEI	CTTGAG	2 cut(s)	83, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 478
Bse1I	ACTGG	2 cut(s)	157, 355
Bse3DI	GCAATG	1 cut(s)	374
BseBI	CCWGG	2 cut(s)	23, 326
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	175, 478
BseMI	GCAATG	1 cut(s)	374
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	2 cut(s)	157, 355
BseXI	GCAGC	1 cut(s)	202
BshFI	GGCC	2 cut(s)	332, 420
BslI	CCNNNNNNNGG	2 cut(s)	175, 478
BsnI	GGCC	2 cut(s)	332, 420
Bsp143I	GATC	1 cut(s)	250
BspANI	GGCC	2 cut(s)	332, 420
BspCNI	CTCAG	1 cut(s)	379
BspPI	GGATC	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	374
BsrI	ACTGG	2 cut(s)	157, 355
BssMI	GATC	1 cut(s)	250
Bst2UI	CCWGG	2 cut(s)	23, 326
Bst6I	CTCTTC	2 cut(s)	354, 393
BstAFI	CTTAAG	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	387
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	303
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 338
BstNI	CCWGG	2 cut(s)	23, 326
BstSCI	CCNGG	2 cut(s)	21, 324
BstV1I	GCAGC	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	332, 420
BtsCI	GGATG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	419, 441
CsiI	ACCWGGT	1 cut(s)	21
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	9 cut(s)	44, 215, 248, 332, 341, 386, 420, 437, 485
CviKI_1	RGCY	9 cut(s)	44, 215, 248, 332, 341, 386, 420, 437, 485
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eam1104I	CTCTTC	2 cut(s)	354, 393
EarI	CTCTTC	2 cut(s)	354, 393
Eco147I	AGGCCT	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	441
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	21, 324
EcoT22I	ATGCAT	1 cut(s)	374
FaeI	CATG	1 cut(s)	235
FaiI	YATR	7 cut(s)	17, 70, 121, 192, 233, 258, 378
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	3 cut(s)	63, 338, 487
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	1 cut(s)	216
GsuI	CTGGAG	1 cut(s)	347
HaeII	RGCGCY	1 cut(s)	325
HaeIII	GGCC	2 cut(s)	332, 420
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	235
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HinfI	GANTC	5 cut(s)	6, 136, 290, 304, 344
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	141, 441
Hpy188III	TCNNGA	3 cut(s)	148, 308, 472
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	4 cut(s)	25, 229, 406, 410
HpyCH4V	TGCA	3 cut(s)	19, 372, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 338
HpyF3I	CTNAG	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	235
HspAI	GCGC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	1 cut(s)	202
MabI	ACCWGGT	1 cut(s)	21
MaeI	CTAG	3 cut(s)	63, 338, 487
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	4 cut(s)	341, 407, 410, 443
MluCI	AATT	1 cut(s)	426
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	6 cut(s)	179, 193, 205, 272, 322, 343
Mph1103I	ATGCAT	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	3 cut(s)	131, 174, 363
MslI	CAYNNNNRTG	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	130
MspR9I	CCNGG	2 cut(s)	23, 326
MvaI	CCWGG	2 cut(s)	23, 326
MwoI	GCNNNNNNNGC	2 cut(s)	224, 338
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	374
PceI	AGGCCT	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	4 cut(s)	6, 136, 290, 304
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Psp6I	CCWGG	2 cut(s)	21, 324
PspGI	CCWGG	2 cut(s)	21, 324
PspPI	GGNCC	2 cut(s)	419, 441
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	3 cut(s)	131, 174, 363
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	2 cut(s)	419, 441
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	2 cut(s)	23, 326
SetI	ASST	6 cut(s)	24, 204, 250, 264, 343, 439
SexAI	ACCWGGT	1 cut(s)	21
SinI	GGWCC	1 cut(s)	441
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	3 cut(s)	98, 130, 263
SmoI	CTYRAG	3 cut(s)	98, 130, 263
Sse9I	AATT	1 cut(s)	426
SseBI	AGGCCT	1 cut(s)	332
SspMI	CTAG	3 cut(s)	63, 338, 487
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	21, 324
TasI	AATT	1 cut(s)	426
TfiI	GAWTC	4 cut(s)	6, 136, 290, 304
Tru1I	TTAA	3 cut(s)	131, 174, 363
Tru9I	TTAA	3 cut(s)	131, 174, 363
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	3 cut(s)	79, 173, 248
Vha464I	CTTAAG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	441
XagI	CCTNNNNNAGG	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	3 cut(s)	63, 338, 487
Zsp2I	ATGCAT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.