Rh6DG154100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011628
Physical Location & Seq
Reverse (-)
23065622 .. 23080066
14445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG154100.1

Sequence Viewer

Length: 495 bp
ATGATTGGGTCCGATCTTGTTCGGATCATCGTCGTCGACATTGGAATCGGAGTCGTAGGGGCCAGAATTGAACAACGACAATGTCGGTTTGCGATTGTGTTGTTGGTGGTTGATTCCGAGGAGGAGCTTGTGCTTCTTCTTGGTGCACTCACCGTCGTCGTCGTCTGGCGGAGGAGGAGGAGGGACGTTAGGGTTGCCGCTGTGGCGAGTGGCGGGGCAGGCGAGGGTGGCGACGCTAGGGTTGAGGAAATGGTGGAGGAAGCGCTTCTGGAGATCGAGAAGCAAAGGAGGCAAGGTACTAATGAAGCAGCTGGCAACCAAGGCGACCTGGAAGTCATCTCCGGTGATCGAAGGACGGAAGAAGCTCCACCACTTCAGAGTGGGAACAGTGGCTCTGAGAGAGATCAAGAAGTACCAAAAGAGCACGGAGTTTCTGATATGCAAGCTTCCATTCTAAAGGCTTGTGAGGGAGATTGCTCAGGATTTCAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.67

Weight (kDa)

4.65

Isoelectric Point (pI)

61.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 36
AciI CCGC 3 cut(s) 169, 198, 213
AclWI GGATC 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 2 cut(s) 298, 414
AfeI AGCGCT 1 cut(s) 264
AgsI TTSAA 2 cut(s) 71, 488
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 4 cut(s) 127, 311, 365, 446
AluI AGCT 4 cut(s) 127, 311, 365, 446
Alw21I GWGCWC 2 cut(s) 148, 426
Alw44I GTGCAC 1 cut(s) 144
AlwI GGATC 1 cut(s) 32
Aor51HI AGCGCT 1 cut(s) 264
AoxI GGCC 1 cut(s) 60
ApaLI GTGCAC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 264
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 2 cut(s) 9, 60
AsuHPI GGTGA 2 cut(s) 142, 356
AvaII GGWCC 1 cut(s) 9
BaeGI GKGCMC 1 cut(s) 148
Bbv12I GWGCWC 2 cut(s) 148, 426
BbvI GCAGC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 329
BfaI CTAG 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 266
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 2 cut(s) 198, 309
BlsI GCNGC 2 cut(s) 199, 310
Bme1390I CCNGG 1 cut(s) 329
Bme18I GGWCC 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 9, 60
BmiI GGNNCC 2 cut(s) 10, 61
BmrFI CCNGG 1 cut(s) 329
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 478
BsaJI CCNNGG 2 cut(s) 117, 319
BsaWI WCCGGW 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 2 cut(s) 117, 319
BseMII CTCAG 2 cut(s) 387, 492
BseRI GAGGAG 5 cut(s) 134, 137, 187, 190, 193
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 1 cut(s) 320
BshFI GGCC 1 cut(s) 62
BsiHKAI GWGCWC 2 cut(s) 148, 426
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 148, 426
Bsp143I GATC 5 cut(s) 13, 24, 273, 346, 403
BspACI CCGC 3 cut(s) 169, 198, 213
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 2 cut(s) 388, 491
BspLI GGNNCC 2 cut(s) 10, 61
BspPI GGATC 1 cut(s) 32
BssECI CCNNGG 2 cut(s) 117, 319
BssMI GATC 5 cut(s) 13, 24, 273, 346, 403
BssT1I CCWWGG 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 2 cut(s) 154, 389
BstC8I GCNNGC 3 cut(s) 220, 313, 444
BstDEI CTNAG 2 cut(s) 396, 478
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 5 cut(s) 16, 27, 276, 349, 406
BstMBI GATC 5 cut(s) 13, 24, 273, 346, 403
BstMWI GCNNNNNNNGC 5 cut(s) 203, 219, 228, 289, 321
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 327
BstSLI GKGCMC 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 320
BsuRI GGCC 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 394
Cac8I GCNNGC 3 cut(s) 220, 313, 444
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 9, 60
CseI GACGC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 297, 413
CviJI RGCY 7 cut(s) 62, 127, 311, 365, 393, 446, 461
CviKI_1 RGCY 7 cut(s) 62, 127, 311, 365, 393, 446, 461
CviQI GTAC 2 cut(s) 297, 413
DdeI CTNAG 2 cut(s) 396, 478
DpnI GATC 5 cut(s) 15, 26, 275, 348, 405
DpnII GATC 5 cut(s) 13, 24, 273, 346, 403
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
EciI GGCGGA 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 9
Eco47III AGCGCT 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 319
FaiI YATR 1 cut(s) 440
FaqI GGGAC 1 cut(s) 197
FauI CCCGC 1 cut(s) 206
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 198, 309
Fsp4HI GCNGC 2 cut(s) 198, 309
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 264
GluI GCNGC 2 cut(s) 198, 309
GsuI CTGGAG 1 cut(s) 290
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 342
HgaI GACGC 1 cut(s) 242
HhaI GCGC 1 cut(s) 265
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 3 cut(s) 45, 51, 113
HpaII CCGG 1 cut(s) 342
HphI GGTGA 2 cut(s) 142, 356
Hpy166II GTNNAC 2 cut(s) 37, 146
Hpy188I TCNGA 7 cut(s) 13, 24, 50, 118, 378, 397, 436
Hpy188III TCNNGA 5 cut(s) 269, 277, 407, 480, 488
Hpy8I GTNNAC 2 cut(s) 37, 146
Hpy99I CGWCG 6 cut(s) 35, 38, 158, 161, 164, 236
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 2 cut(s) 154, 389
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 146, 442
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 219, 228, 289, 321
HpyF3I CTNAG 2 cut(s) 396, 478
HpySE526I ACGT 1 cut(s) 186
HspAI GCGC 1 cut(s) 263
Kzo9I GATC 5 cut(s) 13, 24, 273, 346, 403
LmnI GCTCC 2 cut(s) 124, 370
LpnPI CCDG 9 cut(s) 76, 151, 204, 254, 297, 314, 341, 355, 465
Lsp1109I GCAGC 1 cut(s) 320
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 186
MalI GATC 5 cut(s) 15, 26, 275, 348, 405
MboI GATC 5 cut(s) 13, 24, 273, 346, 403
MboII GAAGA 2 cut(s) 128, 371
MhlI GDGCHC 2 cut(s) 148, 426
MluCI AATT 1 cut(s) 66
MlyI GAGTC 1 cut(s) 60
MroXI GAANNNNTTC 1 cut(s) 264
MspA1I CMGCKG 2 cut(s) 200, 311
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 329
MvaI CCWGG 1 cut(s) 329
MwoI GCNNNNNNNGC 5 cut(s) 203, 219, 228, 289, 321
NdeII GATC 5 cut(s) 13, 24, 273, 346, 403
NlaIV GGNNCC 2 cut(s) 10, 61
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 2 cut(s) 45, 113
PflFI GACNNNGTC 1 cut(s) 81
PkrI GCNGC 2 cut(s) 199, 310
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 2 cut(s) 10, 61
PspPI GGNCC 2 cut(s) 9, 60
PsyI GACNNNGTC 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 2 cut(s) 298, 414
RsaNI GTAC 2 cut(s) 297, 413
SalI GTCGAC 1 cut(s) 35
SatI GCNGC 2 cut(s) 198, 309
Sau3AI GATC 5 cut(s) 13, 24, 273, 346, 403
Sau96I GGNCC 2 cut(s) 9, 60
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 329
SduI GDGCHC 2 cut(s) 148, 426
SetI ASST 7 cut(s) 129, 189, 298, 313, 330, 367, 448
SinI GGWCC 1 cut(s) 9
Sse9I AATT 1 cut(s) 66
SsiI CCGC 3 cut(s) 169, 198, 213
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 327
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 2 cut(s) 154, 389
TaiI ACGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 36, 276, 349
TasI AATT 1 cut(s) 66
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 2 cut(s) 45, 113
TscAI CASTG 1 cut(s) 394
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 1 cut(s) 318
TspGWI ACGGA 2 cut(s) 371, 441
TspRI CASTG 1 cut(s) 394
Tth111I GACNNNGTC 1 cut(s) 81
VneI GTGCAC 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.