Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011628

Physical Location & Seq

Genomic Coordinates Reverse (-)

27446450 .. 27461211

Gene Structure 14762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG167400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATTGGGTCCGATCTTGTTCGGATCGTCGTCGTCGACATTGGAATCGGAGTCGTAGGGGCCAGAATTGAACGCCGACAATGTCGGTTTGCGATTGTGCTGTTGGTGGTTGATTCTGAGGAGGAGCTTGTGCTTCTTCTTGGCGCACTCACCGTCGTCGTTGTCCGGCGGAGGAAGAGGAGGGGCGTTAGGGTTGCCGCTGTGGCGAGTGGCGGGGCAGGCGAGGGTGGCGACGCTAGGATATCTCCAGCTCAAGAAGCTATGCAACTAGTAATTCAAATGGCTGTCGAGTTGCCAATCTTCTTGAATGATAAAAGGTTGATATCCACACAAGTAAAAGTACCTGCCCAAGTAAGACAAATGTGGTTGAAGTTTCAGGCTTTATCGGATGAAGGAAGGTTTTGGGGAGCTTTTGGATTATACTCTACAATAAATGTGGGTGCCGGTGGAAAAATGGGACAAGAGGCAGCTACACTTCAGGATTCTCCAATTGAGTCCTTGCTGGAGGTAGCCTACTCCCTTTTCCAAACCTCAATTGCATTTTTGGACTATTCAAATGATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

188

Amino Acids

20.4

Weight (kDa)

6.35

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011628)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030373
rosa_multiflora	Rmu_sc0003880.1_g000025 Rmu_sc0006948.1_g000011 Rmu_sc0032105.1_g000001
rosa_rugosa	Rorug01G0189900 Rorug01G0190000 Rorug01G0190100 Rorug06G0061300 Rorug06G0061400
rosa_samantha	Rh1AG125400 Rh3BG351200 Rh3CG055900 Rh5AG334200 Rh5BG132800 Rh5DG508200 Rh6AG163600 Rh6BG167400 Rh6CG161200 Rh6DG152800 Rh6DG154100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	3 cut(s)	169, 198, 213
AclWI	GGATC	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	1 cut(s)	342
AgsI	TTSAA	5 cut(s)	71, 278, 307, 370, 555
AhlI	ACTAGT	1 cut(s)	268
AluBI	AGCT	5 cut(s)	127, 251, 260, 410, 470
AluI	AGCT	5 cut(s)	127, 251, 260, 410, 470
AlwI	GGATC	1 cut(s)	32
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	9, 60
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	479
BcuI	ACTAGT	1 cut(s)	268
BfaI	CTAG	2 cut(s)	237, 269
BfuAI	ACCTGC	1 cut(s)	352
BglI	GCCNNNNNGGC	1 cut(s)	203
BisI	GCNGC	2 cut(s)	198, 468
BlsI	GCNGC	2 cut(s)	199, 469
Bme18I	GGWCC	1 cut(s)	9
BmgT120I	GGNCC	2 cut(s)	9, 60
BmiI	GGNNCC	3 cut(s)	10, 61, 442
BpmI	CTGGAG	2 cut(s)	231, 524
BpuEI	CTTGAG	1 cut(s)	237
Bse118I	RCCGGY	1 cut(s)	443
BseGI	GGATG	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	108
BseRI	GAGGAG	3 cut(s)	134, 137, 193
BseXI	GCAGC	1 cut(s)	479
BshFI	GGCC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	166, 444
BslFI	GGGAC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	13, 24
BspACI	CCGC	3 cut(s)	169, 198, 213
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	3 cut(s)	10, 61, 442
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	440
BsrFI	RCCGGY	1 cut(s)	443
BssAI	RCCGGY	1 cut(s)	443
BssMI	GATC	2 cut(s)	13, 24
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	16, 27
BstMBI	GATC	2 cut(s)	13, 24
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 219, 228, 257
BstV1I	GCAGC	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	394
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	9, 60
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	341
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviJI	RGCY	9 cut(s)	62, 127, 251, 260, 284, 380, 410, 470, 512
CviKI_1	RGCY	9 cut(s)	62, 127, 251, 260, 284, 380, 410, 470, 512
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	15, 26
DpnII	GATC	2 cut(s)	13, 24
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	184
Eco32I	GATATC	3 cut(s)	243, 324, 562
Eco47I	GGWCC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	461
EcoRV	GATATC	3 cut(s)	243, 324, 562
FaiI	YATR	2 cut(s)	263, 421
FaqI	GGGAC	1 cut(s)	471
FauI	CCCGC	1 cut(s)	206
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	198, 468
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	2 cut(s)	198, 468
FspBI	CTAG	2 cut(s)	237, 269
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	2 cut(s)	198, 468
GsuI	CTGGAG	2 cut(s)	231, 524
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	2 cut(s)	166, 444
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	146
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	5 cut(s)	45, 51, 113, 482, 494
HpaII	CCGG	2 cut(s)	166, 444
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	5 cut(s)	13, 24, 50, 118, 388
Hpy188III	TCNNGA	3 cut(s)	254, 304, 479
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	6 cut(s)	32, 35, 38, 158, 161, 236
HpyAV	CCTTC	2 cut(s)	386, 390
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	265, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 219, 228, 257
HpyF3I	CTNAG	1 cut(s)	117
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	13, 24
LmnI	GCTCC	2 cut(s)	124, 407
LpnPI	CCDG	9 cut(s)	76, 179, 204, 261, 357, 362, 457, 464, 488
Lsp1109I	GCAGC	1 cut(s)	479
MaeI	CTAG	2 cut(s)	237, 269
MalI	GATC	2 cut(s)	15, 26
MboI	GATC	2 cut(s)	13, 24
MboII	GAAGA	3 cut(s)	128, 187, 292
MfeI	CAATTG	2 cut(s)	489, 534
MluCI	AATT	4 cut(s)	66, 273, 489, 534
MlyI	GAGTC	2 cut(s)	60, 503
MnlI	CCTC	9 cut(s)	112, 115, 165, 171, 174, 217, 457, 499, 541
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	2 cut(s)	166, 444
MunI	CAATTG	2 cut(s)	489, 534
MwoI	GCNNNNNNNGC	4 cut(s)	203, 219, 228, 257
NdeII	GATC	2 cut(s)	13, 24
NlaIV	GGNNCC	3 cut(s)	10, 61, 442
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	3 cut(s)	45, 113, 482
PflFI	GACNNNGTC	1 cut(s)	81
PkrI	GCNGC	2 cut(s)	199, 469
PleI	GAGTC	2 cut(s)	59, 502
PpsI	GAGTC	2 cut(s)	59, 502
PspN4I	GGNNCC	3 cut(s)	10, 61, 442
PspPI	GGNCC	2 cut(s)	9, 60
PsyI	GACNNNGTC	1 cut(s)	81
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
SalI	GTCGAC	1 cut(s)	35
SatI	GCNGC	2 cut(s)	198, 468
Sau3AI	GATC	2 cut(s)	13, 24
Sau96I	GGNCC	2 cut(s)	9, 60
SchI	GAGTC	2 cut(s)	60, 503
SinI	GGWCC	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
SpeI	ACTAGT	1 cut(s)	268
Sse9I	AATT	4 cut(s)	66, 273, 489, 534
SsiI	CCGC	3 cut(s)	169, 198, 213
SspMI	CTAG	2 cut(s)	237, 269
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	2 cut(s)	36, 288
TasI	AATT	4 cut(s)	66, 273, 489, 534
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	3 cut(s)	45, 113, 482
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	1 cut(s)	405
Tth111I	GACNNNGTC	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	9
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	2 cut(s)	237, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.