Rorug06G0061300

Endoplasmic reticulum metallopeptidase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
8214788 .. 8215024
237 bp
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UTR
Exon/CDS
Intron
Rorug06G0061300.1

Sequence Viewer

Length: 237 bp
ATGGTTGGACGTGAATTTTTCCCTTATATTTATTTTTCTCCGTTCTCCACATCTGGTGCCTGGAGGCTTCGTGTGCAGTGGAACAATTGCTTGCATCCTATCTCTCAAATGCATTTCAAATCTAGCCATATATTTCGTGAAGGCAATCAAGCTGCTGATGCCCTTGCTAACTATGGTGCTTCATCAATTCATCAGATGGCTTTACTTGGTGGAATTCAACTCCAGATTTTATGGTGA

Protein Analysis

78

Amino Acids

8.94

Weight (kDa)

9.1

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AcsI RAATTY 2 cut(s) 14, 213
AgsI TTSAA 2 cut(s) 118, 218
AjiI CACGTC 1 cut(s) 11
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 14, 213
BanI GGYRCC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 61
BfaI CTAG 1 cut(s) 123
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 61
BmgBI CACGTC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 2 cut(s) 103, 148
BpmI CTGGAG 2 cut(s) 82, 206
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
BseBI CCWGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 92
BstF5I GGATG 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 73, 158
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 139
BtrI CACGTC 1 cut(s) 11
BtsCI GGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 92
CviJI RGCY 4 cut(s) 67, 126, 152, 200
CviKI_1 RGCY 4 cut(s) 67, 126, 152, 200
EcoRI GAATTC 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 59
EcoT22I ATGCAT 1 cut(s) 114
FaiI YATR 5 cut(s) 27, 129, 131, 174, 232
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 123
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 2 cut(s) 82, 206
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 2 cut(s) 137, 223
HpyAV CCTTC 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 3 cut(s) 76, 94, 112
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 158
HpySE526I ACGT 1 cut(s) 10
LpnPI CCDG 3 cut(s) 39, 46, 73
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 103, 148
MaeI CTAG 1 cut(s) 123
MaeII ACGT 1 cut(s) 10
MfeI CAATTG 1 cut(s) 85
MluCI AATT 4 cut(s) 14, 85, 186, 213
MnlI CCTC 1 cut(s) 57
Mph1103I ATGCAT 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 61
MunI CAATTG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 73, 158
NlaIV GGNNCC 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 114
PkrI GCNGC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 58
SatI GCNGC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 61
SetI ASST 2 cut(s) 13, 154
SfaNI GCATC 2 cut(s) 103, 148
Sse9I AATT 4 cut(s) 14, 85, 186, 213
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 59
TaiI ACGT 1 cut(s) 13
TasI AATT 4 cut(s) 14, 85, 186, 213
TscAI CASTG 1 cut(s) 83
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 171, 179
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 1 cut(s) 83
XapI RAATTY 2 cut(s) 14, 213
XspI CTAG 1 cut(s) 123
Zsp2I ATGCAT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.