Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011628

Physical Location & Seq

Genomic Coordinates Reverse (-)

26258492 .. 26260103

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0190000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGCATTGTGGAAGATGGAGATGAGGATGGGAATGATACTAGAACAGTGGTTGCTGATTTTGATGCTGATGTGGGGAAAAGTGTTGAGCTTGATTTCTTAATTAAGTTTTTGTTTCATGTGGTTGTTGAGTACTGTTTGGAAGAGTTTCCTGAGGAGATCAAGCGTTTTCGTGATACCGGTGATGAGTTGTATGAGAACCATTGTGAGAGGTTTAAGCCATTGGTGGTTGAAGCAAGAACTCTCTTGGGAGATCTTAAGAATGTCAGGTCTGGAGACTGTGTAGTTGCCTTTTCAAGGAGAGAGGTGTTTGAGGTTGAGCTATTTGCAGGGCAACTTTCTAATGTTACATCCTGCCAGCTTCATGACAAATTTGGCGAAAATTGCCGCCTAGATGGGTCATACTTCTTGTGTCGACATGATCATATAAAGAAAGTTGCAAATATGTCACAGAAGGTTCAGGAGTTGTCTCTGGAGGATCGTTTTAACTTCTGTTTTGCCCCAGTAAATATCAGAGACCCAAAAGCTATTTTCCATCTTCTAAAGTTTGCTTCATCATGTAGTCAGAACCTCCCTGTCAATATTGGTATGGGCATACCGACGGTTTCTGCTCGTAACAAGAAAGAACTCTTGGATCTTGAGACTAAGCATCAAGTGTTGTCTATGTATATGTGGTTGTCACACCACTTCAAGGAAGAAACTTTTCCTTATGTCAAGAAGGCTGAGGCAATGGCTACAGATATTGCTGAATTGTTGGGTCAGTCCCTGGCCAATGCTAACTGGAAACCAGAATCAAGGCAGTATCAAAGCCTCAAAAGAAAGAAGATAGTTATGAGAGGCCATTGTCACGCATCAAACTGTATCAGAAGTAGGTTCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0007275 GO:0007548 GO:0008150 GO:0008406 GO:0008585 GO:0012505 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048513 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M28

Protein Analysis

293

Amino Acids

33.69

Weight (kDa)

6.14

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suv3_C_1	PF18147	146 - 186	4.7e-14	Suv3 C-terminal domain 1
SUV3_C	PF12513	210 - 258	1.3e-11	ATP-dependent RNA helicase SUV3 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011628)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030373
rosa_multiflora	Rmu_sc0003880.1_g000025 Rmu_sc0006948.1_g000011 Rmu_sc0032105.1_g000001
rosa_rugosa	Rorug01G0189900 Rorug01G0190000 Rorug01G0190100 Rorug06G0061300 Rorug06G0061400
rosa_samantha	Rh1AG125400 Rh3BG351200 Rh3CG055900 Rh5AG334200 Rh5BG132800 Rh5DG508200 Rh6AG163600 Rh6BG167400 Rh6CG161200 Rh6DG152800 Rh6DG154100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	415
AciI	CCGC	1 cut(s)	388
AclWI	GGATC	2 cut(s)	486, 642
AcoI	YGGCCR	1 cut(s)	768
AcsI	RAATTY	1 cut(s)	371
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	297, 691
AflII	CTTAAG	1 cut(s)	257
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	3 cut(s)	233, 297, 691
AjnI	CCWGG	1 cut(s)	765
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
AluBI	AGCT	4 cut(s)	91, 322, 361, 527
AluI	AGCT	4 cut(s)	91, 322, 361, 527
Alw26I	GTCTC	4 cut(s)	270, 474, 510, 635
AlwI	GGATC	2 cut(s)	486, 642
AlwNI	CAGNNNCTG	1 cut(s)	766
AoxI	GGCC	2 cut(s)	768, 838
ApoI	RAATTY	1 cut(s)	371
AsiGI	ACCGGT	1 cut(s)	179
Asp700I	GAANNNNTTC	2 cut(s)	147, 702
AsuHPI	GGTGA	1 cut(s)	194
AxyI	CCTNAGG	1 cut(s)	153
BalI	TGGCCA	1 cut(s)	770
BbvCI	CCTCAGC	1 cut(s)	723
BccI	CCATC	4 cut(s)	11, 23, 389, 543
BciT130I	CCWGG	1 cut(s)	767
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	4 cut(s)	270, 474, 510, 635
BfaI	CTAG	2 cut(s)	42, 392
BfmI	CTRYAG	2 cut(s)	735, 878
BfrI	CTTAAG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
BmcAI	AGTACT	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	767
BmiI	GGNNCC	1 cut(s)	875
BmrFI	CCNGG	1 cut(s)	767
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	3 cut(s)	55, 658, 860
BmuI	ACTGGG	1 cut(s)	497
BpmI	CTGGAG	2 cut(s)	294, 494
Bpu10I	CCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	659
BsaI	GGTCTC	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	765
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 691
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	503, 785
Bse21I	CCTNAGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	767
BseDI	CCNNGG	1 cut(s)	765
BseGI	GGATG	2 cut(s)	34, 350
BseLI	CCNNNNNNNGG	2 cut(s)	297, 691
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	144, 714
BseNI	ACTGG	2 cut(s)	503, 785
BseRI	GAGGAG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	770, 840
BshTI	ACCGGT	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	748
BslI	CCNNNNNNNGG	2 cut(s)	297, 691
BsmAI	GTCTC	4 cut(s)	270, 474, 510, 635
BsmFI	GGGAC	1 cut(s)	748
BsnI	GGCC	2 cut(s)	770, 840
Bso31I	GGTCTC	1 cut(s)	510
Bsp143I	GATC	5 cut(s)	159, 253, 421, 478, 634
BspACI	CCGC	1 cut(s)	388
BspANI	GGCC	2 cut(s)	770, 840
BspCNI	CTCAG	2 cut(s)	145, 715
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	875
BspPI	GGATC	2 cut(s)	486, 642
BspTI	CTTAAG	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	735
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	503, 785
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	765
BssMI	GATC	5 cut(s)	159, 253, 421, 478, 634
Bst2UI	CCWGG	1 cut(s)	767
Bst4CI	ACNGT	5 cut(s)	49, 137, 281, 604, 860
Bst6I	CTCTTC	1 cut(s)	138
BstAFI	CTTAAG	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	3 cut(s)	153, 645, 723
BstENI	CCTNNNNNAGG	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	34, 350
BstKTI	GATC	5 cut(s)	162, 256, 424, 481, 637
BstMAI	GTCTC	4 cut(s)	270, 474, 510, 635
BstMBI	GATC	5 cut(s)	159, 253, 421, 478, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNI	CCWGG	1 cut(s)	767
BstSCI	CCNGG	1 cut(s)	765
BstSFI	CTRYAG	2 cut(s)	735, 878
BstX2I	RGATCY	2 cut(s)	253, 634
BstYI	RGATCY	2 cut(s)	253, 634
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	770, 840
BtsCI	GGATG	2 cut(s)	34, 350
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	359
CaiI	CAGNNNCTG	1 cut(s)	766
CciI	TCATGA	1 cut(s)	364
Cfr10I	RCCGGY	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	179
CviAII	CATG	4 cut(s)	119, 365, 419, 558
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	3 cut(s)	153, 645, 723
DpnI	GATC	5 cut(s)	161, 255, 423, 480, 636
DpnII	GATC	5 cut(s)	159, 253, 421, 478, 634
EaeI	YGGCCR	1 cut(s)	768
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	510
Eco81I	CCTNAGG	1 cut(s)	153
EcoNI	CCTNNNNNAGG	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	765
FaeI	CATG	4 cut(s)	122, 368, 422, 561
FaqI	GGGAC	1 cut(s)	748
FatI	CATG	4 cut(s)	118, 364, 418, 557
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	1 cut(s)	388
FokI	GGATG	2 cut(s)	41, 337
Fsp4HI	GCNGC	1 cut(s)	388
FspBI	CTAG	2 cut(s)	42, 392
GluI	GCNGC	1 cut(s)	388
GsuI	CTGGAG	2 cut(s)	294, 494
HaeIII	GGCC	2 cut(s)	770, 840
HapII	CCGG	1 cut(s)	180
Hin1II	CATG	4 cut(s)	122, 368, 422, 561
HincII	GTYRAC	1 cut(s)	416
HindII	GTYRAC	1 cut(s)	416
HinfI	GANTC	1 cut(s)	791
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	3 cut(s)	515, 567, 866
Hpy188III	TCNNGA	8 cut(s)	152, 173, 273, 365, 461, 473, 638, 715
Hpy8I	GTNNAC	1 cut(s)	416
Hpy99I	CGWCG	1 cut(s)	604
HpyAV	CCTTC	2 cut(s)	448, 712
HpyCH4III	ACNGT	5 cut(s)	49, 137, 281, 604, 860
HpyCH4V	TGCA	2 cut(s)	329, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	3 cut(s)	153, 645, 723
Hsp92II	CATG	4 cut(s)	122, 368, 422, 561
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	5 cut(s)	159, 253, 421, 478, 634
LweI	GCATC	3 cut(s)	55, 658, 860
MaeI	CTAG	2 cut(s)	42, 392
MaeIII	GTNAC	5 cut(s)	346, 447, 614, 678, 845
MalI	GATC	5 cut(s)	161, 255, 423, 480, 636
MboI	GATC	5 cut(s)	159, 253, 421, 478, 634
MboII	GAAGA	5 cut(s)	26, 155, 530, 707, 835
MflI	RGATCY	2 cut(s)	253, 634
MlsI	TGGCCA	1 cut(s)	770
MluCI	AATT	4 cut(s)	102, 371, 382, 749
MluNI	TGGCCA	1 cut(s)	770
Mox20I	TGGCCA	1 cut(s)	770
MroXI	GAANNNNTTC	2 cut(s)	147, 702
MscI	TGGCCA	1 cut(s)	770
MseI	TTAA	5 cut(s)	101, 105, 216, 258, 486
Msp20I	TGGCCA	1 cut(s)	770
MspCI	CTTAAG	1 cut(s)	257
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	767
MvaI	CCWGG	1 cut(s)	767
MwoI	GCNNNNNNNGC	1 cut(s)	384
NdeII	GATC	5 cut(s)	159, 253, 421, 478, 634
NlaIII	CATG	4 cut(s)	122, 368, 422, 561
NlaIV	GGNNCC	1 cut(s)	875
NmuCI	GTSAC	3 cut(s)	447, 678, 845
PacI	TTAATTAA	1 cut(s)	105
PagI	TCATGA	1 cut(s)	364
PdmI	GAANNNNTTC	2 cut(s)	147, 702
PfeI	GAWTC	1 cut(s)	791
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	765
PspGI	CCWGG	1 cut(s)	765
PspN4I	GGNNCC	1 cut(s)	875
PstNI	CAGNNNCTG	1 cut(s)	766
PsuI	RGATCY	2 cut(s)	253, 634
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SalI	GTCGAC	1 cut(s)	414
SaqAI	TTAA	5 cut(s)	101, 105, 216, 258, 486
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	5 cut(s)	159, 253, 421, 478, 634
ScaI	AGTACT	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	767
SfaNI	GCATC	3 cut(s)	55, 658, 860
SfcI	CTRYAG	2 cut(s)	735, 878
SmlI	CTYRAG	2 cut(s)	257, 638
SmoI	CTYRAG	2 cut(s)	257, 638
Sse9I	AATT	4 cut(s)	102, 371, 382, 749
SsiI	CCGC	1 cut(s)	388
SspI	AATATT	1 cut(s)	583
SspMI	CTAG	2 cut(s)	42, 392
StyD4I	CCNGG	1 cut(s)	765
TaaI	ACNGT	5 cut(s)	49, 137, 281, 604, 860
TaqI	TCGA	1 cut(s)	415
TasI	AATT	4 cut(s)	102, 371, 382, 749
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	791
Tru1I	TTAA	5 cut(s)	101, 105, 216, 258, 486
Tru9I	TTAA	5 cut(s)	101, 105, 216, 258, 486
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	3 cut(s)	447, 678, 845
Tsp45I	GTSAC	3 cut(s)	447, 678, 845
TspDTI	ATGAA	3 cut(s)	107, 353, 543
TspRI	CASTG	1 cut(s)	54
Vha464I	CTTAAG	1 cut(s)	257
XagI	CCTNNNNNAGG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	415
XmnI	GAANNNNTTC	2 cut(s)	147, 702
XspI	CTAG	2 cut(s)	42, 392
ZrmI	AGTACT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.