Rh6AG163600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011628
Physical Location & Seq
Reverse (-)
26039833 .. 26052344
12512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG163600.1

Sequence Viewer

Length: 273 bp
ATGGCGAGTGTAATATATTTTCTTTTGGGTTTTAAGGCTCATATATCTCCAACTCAAGAAGCTATGCAACTAGTAATTCAAATGGCTTTATCGGATGAAGGAAGGTTTTGGGGAGCTTTTGGATTATACGCTACAATAAATGTGGGTGCCGGCGGCAAAATGGGACAAGACGCAGCTACACTTGAGGATTCTCCAATTGAGTCCTTGCTGGAGGTAGCCTACTCCCTTTTCCAAACCTCAATTGCATTTTTGGACTATTCAAATGATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.76

Weight (kDa)

4.1

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AciI CCGC 1 cut(s) 153
AgsI TTSAA 2 cut(s) 80, 261
AhlI ACTAGT 1 cut(s) 70
AluBI AGCT 3 cut(s) 62, 116, 176
AluI AGCT 3 cut(s) 62, 116, 176
ApeKI GCWGC 1 cut(s) 173
BanI GGYRCC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 185
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 1 cut(s) 71
BisI GCNGC 2 cut(s) 154, 174
BlsI GCNGC 2 cut(s) 155, 175
BmiI GGNNCC 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 230
BpuEI CTTGAG 2 cut(s) 39, 203
Bse118I RCCGGY 1 cut(s) 149
BseGI GGATG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 185
BshNI GGYRCC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 177
BspACI CCGC 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 148
BspT107I GGYRCC 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 151
BstF5I GGATG 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 149
CseI GACGC 1 cut(s) 179
CspCI CAANNNNNGTGG 2 cut(s) 123, 158
CviJI RGCY 6 cut(s) 38, 62, 86, 116, 176, 218
CviKI_1 RGCY 6 cut(s) 38, 62, 86, 116, 176, 218
Eco32I GATATC 1 cut(s) 268
EcoRV GATATC 1 cut(s) 268
FaiI YATR 5 cut(s) 16, 42, 44, 65, 127
FaqI GGGAC 1 cut(s) 177
Fnu4HI GCNGC 2 cut(s) 154, 174
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 154, 174
FspBI CTAG 1 cut(s) 71
GluI GCNGC 2 cut(s) 154, 174
GsuI CTGGAG 1 cut(s) 230
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 179
HinfI GANTC 2 cut(s) 188, 200
HpaII CCGG 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 92, 96
HpyCH4V TGCA 2 cut(s) 67, 245
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 2 cut(s) 163, 194
Lsp1109I GCAGC 1 cut(s) 185
MaeI CTAG 1 cut(s) 71
MfeI CAATTG 2 cut(s) 195, 240
MluCI AATT 3 cut(s) 75, 195, 240
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 3 cut(s) 178, 205, 247
MroNI GCCGGC 1 cut(s) 149
MseI TTAA 1 cut(s) 33
MspI CCGG 1 cut(s) 150
MunI CAATTG 2 cut(s) 195, 240
NaeI GCCGGC 1 cut(s) 151
NgoMIV GCCGGC 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 148
PdiI GCCGGC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 2 cut(s) 155, 175
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 2 cut(s) 154, 174
SchI GAGTC 1 cut(s) 209
SetI ASST 6 cut(s) 64, 107, 118, 178, 216, 239
SgeI CNNG 8 cut(s) 18, 68, 83, 162, 179, 194, 217, 221
SmlI CTYRAG 2 cut(s) 54, 182
SmoI CTYRAG 2 cut(s) 54, 182
SpeI ACTAGT 1 cut(s) 70
Sse9I AATT 3 cut(s) 75, 195, 240
SsiI CCGC 1 cut(s) 153
SspMI CTAG 1 cut(s) 71
TasI AATT 3 cut(s) 75, 195, 240
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 111
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.